Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:71409914-72089937

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43 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm16013 11 71429828 to 71436180 6352 - lincRNA gene predicted gene 16013
Cpgi3207 11 71429878 to 71430121 243 CpG island CpG island 3207
Cpgi3208 11 71439991 to 71440262 271 CpG island CpG island 3208
9230020A06Rik 11 71516034 to 71573888 57854 + lincRNA gene RIKEN cDNA 9230020A06 gene
Tssr102812 11 71516515 to 71516541 26 + TSS region transcription start site region 102812
Gm33351 11 71557215 to 71575276 18061 - lincRNA gene predicted gene, 33351
Tssr3571 11 71597439 to 71597440 1 - TSS region transcription start site region 3571
Gm12324 11 71647076 to 71658477 11401 - lincRNA gene predicted gene 12324
Gm33964 11 71650164 to 71664679 14515 + lncRNA gene predicted gene, 33964
Gm48818 11 71696271 to 71697516 1245 - pseudogene predicted gene, 48818
D11Die39 11 71697907 to 71698045 138 DNA segment DNA segment, Chr 11, Dietrich 39
D11Mit279 11 71700989 to 71701095 106 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 279
Gm12325 11 71702310 to 71704344 2034 - lincRNA gene predicted gene 12325
Gm12326 11 71739397 to 71740466 1069 - lincRNA gene predicted gene 12326
Tssr109062 11 71740329 to 71740361 32 - TSS region transcription start site region 109062
Tssr102813 11 71749914 to 71749937 23 + TSS region transcription start site region 102813
Wscd1 11 71749923 to 71789649 39726 + protein coding gene WSC domain containing 1
Cpgi3209 11 71750418 to 71751855 1437 CpG island CpG island 3209
Tssr102814 11 71750680 to 71750691 11 + TSS region transcription start site region 102814
Tssr102815 11 71750982 to 71750995 13 + TSS region transcription start site region 102815
Tssr102816 11 71750998 to 71751039 41 + TSS region transcription start site region 102816
Tssr102817 11 71751056 to 71751059 3 + TSS region transcription start site region 102817
Gm34127 11 71818078 to 71821717 3639 - lncRNA gene predicted gene, 34127
Gm22927 11 71848076 to 71848206 130 - snoRNA gene predicted gene, 22927
Gm46285 11 71891680 to 71897422 5742 + lncRNA gene predicted gene, 46285
4930401O10Rik 11 71928471 to 71940122 11651 - lincRNA gene RIKEN cDNA 4930401O10 gene
Cpgi3210 11 71953600 to 71953783 183 CpG island CpG island 3210
Gm46262 11 71963584 to 71970519 6935 - lncRNA gene predicted gene, 46262
Gm23226 11 72022755 to 72022857 102 + snRNA gene predicted gene, 23226
Aipl1 11 72027963 to 72037509 9546 - protein coding gene aryl hydrocarbon receptor-interacting protein-like 1
Cpgi3211 11 72029139 to 72029525 386 CpG island CpG island 3211
Tssr109063 11 72037452 to 72037459 7 - TSS region transcription start site region 109063
Tssr109064 11 72037474 to 72037495 21 - TSS region transcription start site region 109064
Tssr109065 11 72037503 to 72037512 9 - TSS region transcription start site region 109065
Tssr109066 11 72037513 to 72037525 12 - TSS region transcription start site region 109066
Tssr109067 11 72037551 to 72037558 7 - TSS region transcription start site region 109067
Cpgi3212 11 72041965 to 72043048 1083 CpG island CpG island 3212
Pimreg 11 72042427 to 72047372 4945 + protein coding gene PICALM interacting mitotic regulator
Tssr102818 11 72042461 to 72042481 20 + TSS region transcription start site region 102818
Tssr102819 11 72042492 to 72042508 16 + TSS region transcription start site region 102819
Pitpnm3 11 72047528 to 72135778 88250 - protein coding gene PITPNM family member 3
Cpgi3213 11 72050676 to 72051488 812 CpG island CpG island 3213
Gm46286 11 72051331 to 72055601 4270 + lncRNA gene predicted gene, 46286