Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:71095418-72406855

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121 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Etax9 11 55394159 to 72319101 16924942 QTL ethanol induced ataxia 9
Del(11Nlrp1a-Nlrp1c-ps)1Smas 11 71092236 to 71285232 192996 chromosomal deletion deletion, Chr 11, Seth Masters
Nlrp1a 11 71092236 to 71144704 52468 - protein coding gene NLR family, pyrin domain containing 1A
Tssr109057 11 71144750 to 71144794 44 - TSS region transcription start site region 109057
Tssr109058 11 71144800 to 71144813 13 - TSS region transcription start site region 109058
Nlrp1b 11 71153102 to 71230733 77631 - protein coding gene NLR family, pyrin domain containing 1B
D11Die40 11 71165763 to 71166136 373 DNA segment DNA segment, Chr 11, Dietrich 40
Tssr109059 11 71202851 to 71202885 34 - TSS region transcription start site region 109059
Gm23266 11 71233807 to 71233940 133 - snoRNA gene predicted gene, 23266
Nlrp1c-ps 11 71242430 to 71285232 42802 - pseudogene NLR family, pyrin domain containing 1C, pseudogene
Tssr109060 11 71285250 to 71285279 29 - TSS region transcription start site region 109060
Tssr109061 11 71285306 to 71285321 15 - TSS region transcription start site region 109061
Gm23311 11 71288425 to 71288558 133 - snoRNA gene predicted gene, 23311
Gm17874 11 71339781 to 71340359 578 - pseudogene predicted gene, 17874
D11Die38 11 71352258 to 71352446 188 DNA segment DNA segment, Chr 11, Dietrich 38
Gm33249 11 71385160 to 71392682 7522 + lncRNA gene predicted gene, 33249
D11Die37 11 71390047 to 71390178 131 DNA segment DNA segment, Chr 11, Dietrich 37
Gm16013 11 71429828 to 71436180 6352 - lincRNA gene predicted gene 16013
Cpgi3207 11 71429878 to 71430121 243 CpG island CpG island 3207
Cpgi3208 11 71439991 to 71440262 271 CpG island CpG island 3208
9230020A06Rik 11 71516034 to 71573888 57854 + lincRNA gene RIKEN cDNA 9230020A06 gene
Tssr102812 11 71516515 to 71516541 26 + TSS region transcription start site region 102812
Gm33351 11 71557215 to 71575276 18061 - lincRNA gene predicted gene, 33351
Tssr3571 11 71597439 to 71597440 1 - TSS region transcription start site region 3571
Gm12324 11 71647076 to 71658477 11401 - lincRNA gene predicted gene 12324
Gm33964 11 71650164 to 71664679 14515 + lncRNA gene predicted gene, 33964
Gm48818 11 71696271 to 71697516 1245 - pseudogene predicted gene, 48818
D11Die39 11 71697907 to 71698045 138 DNA segment DNA segment, Chr 11, Dietrich 39
D11Mit279 11 71700989 to 71701095 106 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 279
Gm12325 11 71702310 to 71704344 2034 - lincRNA gene predicted gene 12325
Gm12326 11 71739397 to 71740466 1069 - lincRNA gene predicted gene 12326
Tssr109062 11 71740329 to 71740361 32 - TSS region transcription start site region 109062
Tssr102813 11 71749914 to 71749937 23 + TSS region transcription start site region 102813
Wscd1 11 71749923 to 71789649 39726 + protein coding gene WSC domain containing 1
Cpgi3209 11 71750418 to 71751855 1437 CpG island CpG island 3209
Tssr102814 11 71750680 to 71750691 11 + TSS region transcription start site region 102814
Tssr102815 11 71750982 to 71750995 13 + TSS region transcription start site region 102815
Tssr102816 11 71750998 to 71751039 41 + TSS region transcription start site region 102816
Tssr102817 11 71751056 to 71751059 3 + TSS region transcription start site region 102817
Gm34127 11 71818078 to 71821717 3639 - lncRNA gene predicted gene, 34127
Gm22927 11 71848076 to 71848206 130 - snoRNA gene predicted gene, 22927
Gm46285 11 71891680 to 71897422 5742 + lncRNA gene predicted gene, 46285
4930401O10Rik 11 71928471 to 71940122 11651 - lincRNA gene RIKEN cDNA 4930401O10 gene
Cpgi3210 11 71953600 to 71953783 183 CpG island CpG island 3210
Gm46262 11 71963584 to 71970519 6935 - lncRNA gene predicted gene, 46262
Gm23226 11 72022755 to 72022857 102 + snRNA gene predicted gene, 23226
Aipl1 11 72027963 to 72037509 9546 - protein coding gene aryl hydrocarbon receptor-interacting protein-like 1
Cpgi3211 11 72029139 to 72029525 386 CpG island CpG island 3211
Tssr109063 11 72037452 to 72037459 7 - TSS region transcription start site region 109063
Tssr109064 11 72037474 to 72037495 21 - TSS region transcription start site region 109064
Tssr109065 11 72037503 to 72037512 9 - TSS region transcription start site region 109065
Tssr109066 11 72037513 to 72037525 12 - TSS region transcription start site region 109066
Tssr109067 11 72037551 to 72037558 7 - TSS region transcription start site region 109067
Cpgi3212 11 72041965 to 72043048 1083 CpG island CpG island 3212
Pimreg 11 72042427 to 72047372 4945 + protein coding gene PICALM interacting mitotic regulator
Tssr102818 11 72042461 to 72042481 20 + TSS region transcription start site region 102818
Tssr102819 11 72042492 to 72042508 16 + TSS region transcription start site region 102819
Pitpnm3 11 72047528 to 72135778 88250 - protein coding gene PITPNM family member 3
Cpgi3213 11 72050676 to 72051488 812 CpG island CpG island 3213
Gm46286 11 72051331 to 72055601 4270 + lncRNA gene predicted gene, 46286
Cpgi3214 11 72134999 to 72136440 1441 CpG island CpG island 3214
Tssr109068 11 72135737 to 72135775 38 - TSS region transcription start site region 109068
Tssr109069 11 72135805 to 72135836 31 - TSS region transcription start site region 109069
Tssr109070 11 72135988 to 72136009 21 - TSS region transcription start site region 109070
4933427D14Rik 11 72154097 to 72207470 53373 - protein coding gene RIKEN cDNA 4933427D14 gene
Tssr109071 11 72170770 to 72170787 17 - TSS region transcription start site region 109071
Tssr109072 11 72170790 to 72170819 29 - TSS region transcription start site region 109072
Gm43951 11 72203952 to 72206840 2888 - protein coding gene predicted gene, 43951
Cpgi3215 11 72206300 to 72207901 1601 CpG island CpG island 3215
Tssr109073 11 72206996 to 72207011 15 - TSS region transcription start site region 109073
Tssr109074 11 72207213 to 72207279 66 - TSS region transcription start site region 109074
Tssr109075 11 72207413 to 72207488 75 - TSS region transcription start site region 109075
Tssr102820 11 72207521 to 72207532 11 + TSS region transcription start site region 102820
Tssr102821 11 72207537 to 72207620 83 + TSS region transcription start site region 102821
Txndc17 11 72207547 to 72210015 2468 + protein coding gene thioredoxin domain containing 17
Tssr102822 11 72208267 to 72208284 17 + TSS region transcription start site region 102822
Tssr102823 11 72208732 to 72208760 28 + TSS region transcription start site region 102823
Med31 11 72211724 to 72215592 3868 - protein coding gene mediator complex subunit 31
Cpgi3216 11 72214700 to 72215865 1165 CpG island CpG island 3216
Tssr109076 11 72214985 to 72215020 35 - TSS region transcription start site region 109076
Tssr109077 11 72215026 to 72215068 42 - TSS region transcription start site region 109077
Tssr109078 11 72215087 to 72215094 7 - TSS region transcription start site region 109078
4930563E22Rik 11 72215138 to 72218450 3312 + unclassified non-coding RNA gene RIKEN cDNA 4930563E22 gene
Tssr109079 11 72215177 to 72215218 41 - TSS region transcription start site region 109079
D11Mit364 11 72232789 to 72232904 115 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 364
Slc13a5 11 72241990 to 72267056 25066 - protein coding gene solute carrier family 13 (sodium-dependent citrate transporter), member 5
Gm34252 11 72243645 to 72247660 4015 + lncRNA gene predicted gene, 34252
Cpgi3217 11 72266107 to 72267507 1400 CpG island CpG island 3217
Tssr102824 11 72266409 to 72266423 14 + TSS region transcription start site region 102824
Tssr102825 11 72266426 to 72266454 28 + TSS region transcription start site region 102825
Tssr102826 11 72266469 to 72266479 10 + TSS region transcription start site region 102826
Tssr109080 11 72266596 to 72266611 15 - TSS region transcription start site region 109080
Tssr109081 11 72266621 to 72266640 19 - TSS region transcription start site region 109081
1700051A21Rik 11 72266844 to 72268556 1712 + lncRNA gene RIKEN cDNA 1700051A21 gene
Tssr109082 11 72267141 to 72267164 23 - TSS region transcription start site region 109082
Tssr102827 11 72267240 to 72267247 7 + TSS region transcription start site region 102827
Tssr102828 11 72267251 to 72267267 16 + TSS region transcription start site region 102828
Tssr102829 11 72267268 to 72267273 5 + TSS region transcription start site region 102829
Tssr102830 11 72267274 to 72267300 26 + TSS region transcription start site region 102830
Tssr102831 11 72267302 to 72267320 18 + TSS region transcription start site region 102831
n-R5s70 11 72281016 to 72281131 115 + rRNA gene nuclear encoded rRNA 5S 70
4930511C11Rik 11 72281224 to 72281658 434 unclassified gene RIKEN cDNA 4930511C11 gene
Tssr102832 11 72301613 to 72301671 58 + TSS region transcription start site region 102832
Xaf1 11 72301629 to 72313733 12104 + protein coding gene XIAP associated factor 1
Tssr102833 11 72305459 to 72305474 15 + TSS region transcription start site region 102833
Tssr102834 11 72305501 to 72305517 16 + TSS region transcription start site region 102834
Tssr102835 11 72306560 to 72306575 15 + TSS region transcription start site region 102835
Tssr102836 11 72308608 to 72308629 21 + TSS region transcription start site region 102836
Cpgi3218 11 72314126 to 72314772 646 CpG island CpG island 3218
Tssr102837 11 72314438 to 72314455 17 + TSS region transcription start site region 102837
Fbxo39 11 72314444 to 72319416 4972 + protein coding gene F-box protein 39
D11Mit219 11 72318970 to 72319101 131 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 219
Alcp2 11 72318970 to 84840636 12521666 QTL alcohol preference locus 2, female specific
Gm23224 11 72340370 to 72340640 270 + unclassified non-coding RNA gene predicted gene, 23224
Tekt1 11 72344722 to 72362442 17720 - protein coding gene tektin 1
Cpgi3219 11 72361727 to 72362350 623 CpG island CpG island 3219
Tssr109083 11 72361837 to 72361899 62 - TSS region transcription start site region 109083
Tssr102838 11 72361911 to 72361926 15 + TSS region transcription start site region 102838
Gm34317 11 72361928 to 72370855 8927 + lncRNA gene predicted gene, 34317
Mir6338 11 72388756 to 72388864 108 + miRNA gene microRNA 6338
Smtnl2 11 72389164 to 72411713 22549 - protein coding gene smoothelin-like 2