Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:71025160-71752682

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46 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mis12 11 71019611 to 71027371 7760 + protein coding gene MIS12 kinetochore complex component
6330403K07Rik 11 71031941 to 71033513 1572 - lincRNA gene RIKEN cDNA 6330403K07 gene
Cpgi3206 11 71032867 to 71033482 615 CpG island CpG island 3206
Tssr109055 11 71032900 to 71032913 13 - TSS region transcription start site region 109055
Tssr109056 11 71033462 to 71033480 18 - TSS region transcription start site region 109056
D11Die35 11 71046306 to 71046421 115 DNA segment DNA segment, Chr 11, Dietrich 35
Gm12321 11 71057166 to 71057969 803 - pseudogene predicted gene 12321
Gm15377 11 71069423 to 71070134 711 + pseudogene predicted gene 15377
Del(11Nlrp1a-Nlrp1c-ps)1Smas 11 71092236 to 71285232 192996 chromosomal deletion deletion, Chr 11, Seth Masters
Nlrp1a 11 71092236 to 71144704 52468 - protein coding gene NLR family, pyrin domain containing 1A
Tssr109057 11 71144750 to 71144794 44 - TSS region transcription start site region 109057
Tssr109058 11 71144800 to 71144813 13 - TSS region transcription start site region 109058
Nlrp1b 11 71153102 to 71230733 77631 - protein coding gene NLR family, pyrin domain containing 1B
D11Die40 11 71165763 to 71166136 373 DNA segment DNA segment, Chr 11, Dietrich 40
Tssr109059 11 71202851 to 71202885 34 - TSS region transcription start site region 109059
Gm23266 11 71233807 to 71233940 133 - snoRNA gene predicted gene, 23266
Nlrp1c-ps 11 71242430 to 71285232 42802 - pseudogene NLR family, pyrin domain containing 1C, pseudogene
Tssr109060 11 71285250 to 71285279 29 - TSS region transcription start site region 109060
Tssr109061 11 71285306 to 71285321 15 - TSS region transcription start site region 109061
Gm23311 11 71288425 to 71288558 133 - snoRNA gene predicted gene, 23311
Gm17874 11 71339781 to 71340359 578 - pseudogene predicted gene, 17874
D11Die38 11 71352258 to 71352446 188 DNA segment DNA segment, Chr 11, Dietrich 38
Gm33249 11 71385160 to 71392682 7522 + lncRNA gene predicted gene, 33249
D11Die37 11 71390047 to 71390178 131 DNA segment DNA segment, Chr 11, Dietrich 37
Gm16013 11 71429828 to 71436180 6352 - lincRNA gene predicted gene 16013
Cpgi3207 11 71429878 to 71430121 243 CpG island CpG island 3207
Cpgi3208 11 71439991 to 71440262 271 CpG island CpG island 3208
9230020A06Rik 11 71516034 to 71573888 57854 + lincRNA gene RIKEN cDNA 9230020A06 gene
Tssr102812 11 71516515 to 71516541 26 + TSS region transcription start site region 102812
Gm33351 11 71557215 to 71575276 18061 - lincRNA gene predicted gene, 33351
Tssr3571 11 71597439 to 71597440 1 - TSS region transcription start site region 3571
Gm12324 11 71647076 to 71658477 11401 - lincRNA gene predicted gene 12324
Gm33964 11 71650164 to 71664679 14515 + lncRNA gene predicted gene, 33964
Gm48818 11 71696271 to 71697516 1245 - pseudogene predicted gene, 48818
D11Die39 11 71697907 to 71698045 138 DNA segment DNA segment, Chr 11, Dietrich 39
D11Mit279 11 71700989 to 71701095 106 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 279
Gm12325 11 71702310 to 71704344 2034 - lincRNA gene predicted gene 12325
Gm12326 11 71739397 to 71740466 1069 - lincRNA gene predicted gene 12326
Tssr109062 11 71740329 to 71740361 32 - TSS region transcription start site region 109062
Tssr102813 11 71749914 to 71749937 23 + TSS region transcription start site region 102813
Wscd1 11 71749923 to 71789649 39726 + protein coding gene WSC domain containing 1
Cpgi3209 11 71750418 to 71751855 1437 CpG island CpG island 3209
Tssr102814 11 71750680 to 71750691 11 + TSS region transcription start site region 102814
Tssr102815 11 71750982 to 71750995 13 + TSS region transcription start site region 102815
Tssr102816 11 71750998 to 71751039 41 + TSS region transcription start site region 102816
Tssr102817 11 71751056 to 71751059 3 + TSS region transcription start site region 102817