Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:70692963-73372509

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358 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Etax9 11 55394159 to 72319101 16924942 QTL ethanol induced ataxia 9
Inca1 11 70688361 to 70700155 11794 - protein coding gene inhibitor of CDK, cyclin A1 interacting protein 1
Cpgi3198 11 70699812 to 70701183 1371 CpG island CpG island 3198
Tssr109037 11 70700105 to 70700170 65 - TSS region transcription start site region 109037
Tssr102787 11 70700210 to 70700300 90 + TSS region transcription start site region 102787
Tssr102788 11 70700473 to 70700552 79 + TSS region transcription start site region 102788
Kif1c 11 70700548 to 70731964 31416 + protein coding gene kinesin family member 1C
Tssr102789 11 70700606 to 70700615 9 + TSS region transcription start site region 102789
Tssr102790 11 70702285 to 70702296 11 + TSS region transcription start site region 102790
Tssr102791 11 70702363 to 70702376 13 + TSS region transcription start site region 102791
Mir6925 11 70705990 to 70706059 69 + miRNA gene microRNA 6925
Tssr102792 11 70715811 to 70715818 7 + TSS region transcription start site region 102792
Tssr102793 11 70718944 to 70718951 7 + TSS region transcription start site region 102793
D11Die30 11 70739125 to 70739260 135 DNA segment DNA segment, Chr 11, Dietrich 30
Gm12320 11 70748705 to 70755151 6446 - lincRNA gene predicted gene 12320
Tssr109038 11 70755156 to 70755173 17 - TSS region transcription start site region 109038
Gm12318 11 70762107 to 70762379 272 - pseudogene predicted gene 12318
Gm22760 11 70762140 to 70762232 92 - miRNA gene predicted gene, 22760
Cpgi3199 11 70763660 to 70764909 1249 CpG island CpG island 3199
Tssr102794 11 70764428 to 70764483 55 + TSS region transcription start site region 102794
Zfp3 11 70764447 to 70772928 8481 + protein coding gene zinc finger protein 3
Cpgi3200 11 70777256 to 70777453 197 CpG island CpG island 3200
Tssr109039 11 70789438 to 70789458 20 - TSS region transcription start site region 109039
Scimp 11 70790932 to 70812561 21629 - protein coding gene SLP adaptor and CSK interacting membrane protein
Tssr109040 11 70812494 to 70812501 7 - TSS region transcription start site region 109040
Tssr109041 11 70812510 to 70812532 22 - TSS region transcription start site region 109041
Tssr109042 11 70812539 to 70812554 15 - TSS region transcription start site region 109042
Cpgi3201 11 70844276 to 70845734 1458 CpG island CpG island 3201
Tssr102795 11 70844745 to 70844816 71 + TSS region transcription start site region 102795
Rabep1 11 70844778 to 70943105 98327 + protein coding gene rabaptin, RAB GTPase binding effector protein 1
Tssr102796 11 70844927 to 70844959 32 + TSS region transcription start site region 102796
D11Die31 11 70857796 to 70857950 154 DNA segment DNA segment, Chr 11, Dietrich 31
Gm19967 11 70864660 to 70872754 8094 + sense intronic lncRNA gene predicted gene, 19967
Tssr102797 11 70869661 to 70869669 8 + TSS region transcription start site region 102797
Tssr102798 11 70877095 to 70877124 29 + TSS region transcription start site region 102798
Tssr102799 11 70879412 to 70879426 14 + TSS region transcription start site region 102799
Rpl23a-ps2 11 70879428 to 70879901 473 + pseudogene ribosomal protein L23A, pseudogene 2
Tssr102800 11 70884767 to 70884785 18 + TSS region transcription start site region 102800
Tssr102801 11 70884803 to 70884824 21 + TSS region transcription start site region 102801
Gm12322 11 70909257 to 70909645 388 - pseudogene predicted gene 12322
Tssr102802 11 70929793 to 70929805 12 + TSS region transcription start site region 102802
Nup88 11 70943058 to 70969973 26915 - protein coding gene nucleoporin 88
D11Die32 11 70953363 to 70953506 143 DNA segment DNA segment, Chr 11, Dietrich 32
D11Mit320 11 70953368 to 70953486 118 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 320
D11Die33 11 70954150 to 70954353 203 DNA segment DNA segment, Chr 11, Dietrich 33
Cpgi3202 11 70969449 to 70970873 1424 CpG island CpG island 3202
Tssr109043 11 70969953 to 70969978 25 - TSS region transcription start site region 109043
Tssr102803 11 70970181 to 70970196 15 + TSS region transcription start site region 102803
Rpain 11 70970213 to 70977833 7620 + protein coding gene RPA interacting protein
Tssr102804 11 70970467 to 70970517 50 + TSS region transcription start site region 102804
Tssr109044 11 70970722 to 70970729 7 - TSS region transcription start site region 109044
Tssr109045 11 70970762 to 70970781 19 - TSS region transcription start site region 109045
Tssr109046 11 70971076 to 70971087 11 - TSS region transcription start site region 109046
Tssr109047 11 70971093 to 70971104 11 - TSS region transcription start site region 109047
Tssr102805 11 70971151 to 70971162 11 + TSS region transcription start site region 102805
C1qbp 11 70977846 to 70983026 5180 - protein coding gene complement component 1, q subcomponent binding protein
Cpgi3203 11 70982571 to 70983483 912 CpG island CpG island 3203
Tssr109048 11 70982947 to 70982985 38 - TSS region transcription start site region 109048
Tssr109049 11 70982987 to 70983024 37 - TSS region transcription start site region 109049
Dhx33 11 70984091 to 71004437 20346 - protein coding gene DEAH (Asp-Glu-Ala-His) box polypeptide 33
Tssr109050 11 70992540 to 70992570 30 - TSS region transcription start site region 109050
Gm22297 11 70996539 to 70996644 105 - snRNA gene predicted gene, 22297
Cpgi3204 11 71003684 to 71004717 1033 CpG island CpG island 3204
Tssr109051 11 71004387 to 71004501 114 - TSS region transcription start site region 109051
Derl2 11 71007440 to 71019841 12401 - protein coding gene Der1-like domain family, member 2
Tssr109052 11 71018498 to 71018521 23 - TSS region transcription start site region 109052
Cpgi3205 11 71018964 to 71020106 1142 CpG island CpG island 3205
Tssr109053 11 71019233 to 71019267 34 - TSS region transcription start site region 109053
Tssr109054 11 71019270 to 71019290 20 - TSS region transcription start site region 109054
Tssr102806 11 71019570 to 71019579 9 + TSS region transcription start site region 102806
Tssr102807 11 71019593 to 71019617 24 + TSS region transcription start site region 102807
Mis12 11 71019611 to 71027371 7760 + protein coding gene MIS12 kinetochore complex component
Tssr102808 11 71019626 to 71019638 12 + TSS region transcription start site region 102808
Tssr102809 11 71019641 to 71019653 12 + TSS region transcription start site region 102809
Tssr102810 11 71019868 to 71019888 20 + TSS region transcription start site region 102810
Tssr102811 11 71019895 to 71019938 43 + TSS region transcription start site region 102811
6330403K07Rik 11 71031941 to 71033513 1572 - lincRNA gene RIKEN cDNA 6330403K07 gene
Cpgi3206 11 71032867 to 71033482 615 CpG island CpG island 3206
Tssr109055 11 71032900 to 71032913 13 - TSS region transcription start site region 109055
Tssr109056 11 71033462 to 71033480 18 - TSS region transcription start site region 109056
D11Die35 11 71046306 to 71046421 115 DNA segment DNA segment, Chr 11, Dietrich 35
Gm12321 11 71057166 to 71057969 803 - pseudogene predicted gene 12321
Gm15377 11 71069423 to 71070134 711 + pseudogene predicted gene 15377
Nlrp1a 11 71092236 to 71144704 52468 - protein coding gene NLR family, pyrin domain containing 1A
Del(11Nlrp1a-Nlrp1c-ps)1Smas 11 71092236 to 71285232 192996 chromosomal deletion deletion, Chr 11, Seth Masters
Tssr109057 11 71144750 to 71144794 44 - TSS region transcription start site region 109057
Tssr109058 11 71144800 to 71144813 13 - TSS region transcription start site region 109058
Nlrp1b 11 71153102 to 71230733 77631 - protein coding gene NLR family, pyrin domain containing 1B
D11Die40 11 71165763 to 71166136 373 DNA segment DNA segment, Chr 11, Dietrich 40
Tssr109059 11 71202851 to 71202885 34 - TSS region transcription start site region 109059
Gm23266 11 71233807 to 71233940 133 - snoRNA gene predicted gene, 23266
Nlrp1c-ps 11 71242430 to 71285232 42802 - pseudogene NLR family, pyrin domain containing 1C, pseudogene
Tssr109060 11 71285250 to 71285279 29 - TSS region transcription start site region 109060
Tssr109061 11 71285306 to 71285321 15 - TSS region transcription start site region 109061
Gm23311 11 71288425 to 71288558 133 - snoRNA gene predicted gene, 23311
Gm17874 11 71339781 to 71340359 578 - pseudogene predicted gene, 17874
D11Die38 11 71352258 to 71352446 188 DNA segment DNA segment, Chr 11, Dietrich 38
Gm33249 11 71385160 to 71392682 7522 + lncRNA gene predicted gene, 33249
D11Die37 11 71390047 to 71390178 131 DNA segment DNA segment, Chr 11, Dietrich 37
Gm16013 11 71429828 to 71436180 6352 - lincRNA gene predicted gene 16013
Cpgi3207 11 71429878 to 71430121 243 CpG island CpG island 3207
Cpgi3208 11 71439991 to 71440262 271 CpG island CpG island 3208
9230020A06Rik 11 71516034 to 71573888 57854 + lincRNA gene RIKEN cDNA 9230020A06 gene
Tssr102812 11 71516515 to 71516541 26 + TSS region transcription start site region 102812
Gm33351 11 71557215 to 71575276 18061 - lincRNA gene predicted gene, 33351
Tssr3571 11 71597439 to 71597440 1 - TSS region transcription start site region 3571
Gm12324 11 71647076 to 71658477 11401 - lincRNA gene predicted gene 12324
Gm33964 11 71650164 to 71664679 14515 + lncRNA gene predicted gene, 33964
Gm48818 11 71696271 to 71697516 1245 - pseudogene predicted gene, 48818
D11Die39 11 71697907 to 71698045 138 DNA segment DNA segment, Chr 11, Dietrich 39
D11Mit279 11 71700989 to 71701095 106 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 279
Gm12325 11 71702310 to 71704344 2034 - lincRNA gene predicted gene 12325
Gm12326 11 71739397 to 71740466 1069 - lincRNA gene predicted gene 12326
Tssr109062 11 71740329 to 71740361 32 - TSS region transcription start site region 109062
Tssr102813 11 71749914 to 71749937 23 + TSS region transcription start site region 102813
Wscd1 11 71749923 to 71789649 39726 + protein coding gene WSC domain containing 1
Cpgi3209 11 71750418 to 71751855 1437 CpG island CpG island 3209
Tssr102814 11 71750680 to 71750691 11 + TSS region transcription start site region 102814
Tssr102815 11 71750982 to 71750995 13 + TSS region transcription start site region 102815
Tssr102816 11 71750998 to 71751039 41 + TSS region transcription start site region 102816
Tssr102817 11 71751056 to 71751059 3 + TSS region transcription start site region 102817
Gm34127 11 71818078 to 71821717 3639 - lncRNA gene predicted gene, 34127
Gm22927 11 71848076 to 71848206 130 - snoRNA gene predicted gene, 22927
Gm46285 11 71891680 to 71897422 5742 + lncRNA gene predicted gene, 46285
4930401O10Rik 11 71928471 to 71940122 11651 - lincRNA gene RIKEN cDNA 4930401O10 gene
Cpgi3210 11 71953600 to 71953783 183 CpG island CpG island 3210
Gm46262 11 71963584 to 71970519 6935 - lncRNA gene predicted gene, 46262
Gm23226 11 72022755 to 72022857 102 + snRNA gene predicted gene, 23226
Aipl1 11 72027963 to 72037509 9546 - protein coding gene aryl hydrocarbon receptor-interacting protein-like 1
Cpgi3211 11 72029139 to 72029525 386 CpG island CpG island 3211
Tssr109063 11 72037452 to 72037459 7 - TSS region transcription start site region 109063
Tssr109064 11 72037474 to 72037495 21 - TSS region transcription start site region 109064
Tssr109065 11 72037503 to 72037512 9 - TSS region transcription start site region 109065
Tssr109066 11 72037513 to 72037525 12 - TSS region transcription start site region 109066
Tssr109067 11 72037551 to 72037558 7 - TSS region transcription start site region 109067
Cpgi3212 11 72041965 to 72043048 1083 CpG island CpG island 3212
Pimreg 11 72042427 to 72047372 4945 + protein coding gene PICALM interacting mitotic regulator
Tssr102818 11 72042461 to 72042481 20 + TSS region transcription start site region 102818
Tssr102819 11 72042492 to 72042508 16 + TSS region transcription start site region 102819
Pitpnm3 11 72047528 to 72135778 88250 - protein coding gene PITPNM family member 3
Cpgi3213 11 72050676 to 72051488 812 CpG island CpG island 3213
Gm46286 11 72051331 to 72055601 4270 + lncRNA gene predicted gene, 46286
Cpgi3214 11 72134999 to 72136440 1441 CpG island CpG island 3214
Tssr109068 11 72135737 to 72135775 38 - TSS region transcription start site region 109068
Tssr109069 11 72135805 to 72135836 31 - TSS region transcription start site region 109069
Tssr109070 11 72135988 to 72136009 21 - TSS region transcription start site region 109070
4933427D14Rik 11 72154097 to 72207470 53373 - protein coding gene RIKEN cDNA 4933427D14 gene
Tssr109071 11 72170770 to 72170787 17 - TSS region transcription start site region 109071
Tssr109072 11 72170790 to 72170819 29 - TSS region transcription start site region 109072
Gm43951 11 72203952 to 72206840 2888 - protein coding gene predicted gene, 43951
Cpgi3215 11 72206300 to 72207901 1601 CpG island CpG island 3215
Tssr109073 11 72206996 to 72207011 15 - TSS region transcription start site region 109073
Tssr109074 11 72207213 to 72207279 66 - TSS region transcription start site region 109074
Tssr109075 11 72207413 to 72207488 75 - TSS region transcription start site region 109075
Tssr102820 11 72207521 to 72207532 11 + TSS region transcription start site region 102820
Tssr102821 11 72207537 to 72207620 83 + TSS region transcription start site region 102821
Txndc17 11 72207547 to 72210015 2468 + protein coding gene thioredoxin domain containing 17
Tssr102822 11 72208267 to 72208284 17 + TSS region transcription start site region 102822
Tssr102823 11 72208732 to 72208760 28 + TSS region transcription start site region 102823
Med31 11 72211724 to 72215592 3868 - protein coding gene mediator complex subunit 31
Cpgi3216 11 72214700 to 72215865 1165 CpG island CpG island 3216
Tssr109076 11 72214985 to 72215020 35 - TSS region transcription start site region 109076
Tssr109077 11 72215026 to 72215068 42 - TSS region transcription start site region 109077
Tssr109078 11 72215087 to 72215094 7 - TSS region transcription start site region 109078
4930563E22Rik 11 72215138 to 72218450 3312 + unclassified non-coding RNA gene RIKEN cDNA 4930563E22 gene
Tssr109079 11 72215177 to 72215218 41 - TSS region transcription start site region 109079
D11Mit364 11 72232789 to 72232904 115 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 364
Slc13a5 11 72241990 to 72267056 25066 - protein coding gene solute carrier family 13 (sodium-dependent citrate transporter), member 5
Gm34252 11 72243645 to 72247660 4015 + lncRNA gene predicted gene, 34252
Cpgi3217 11 72266107 to 72267507 1400 CpG island CpG island 3217
Tssr102824 11 72266409 to 72266423 14 + TSS region transcription start site region 102824
Tssr102825 11 72266426 to 72266454 28 + TSS region transcription start site region 102825
Tssr102826 11 72266469 to 72266479 10 + TSS region transcription start site region 102826
Tssr109080 11 72266596 to 72266611 15 - TSS region transcription start site region 109080
Tssr109081 11 72266621 to 72266640 19 - TSS region transcription start site region 109081
1700051A21Rik 11 72266844 to 72268556 1712 + lncRNA gene RIKEN cDNA 1700051A21 gene
Tssr109082 11 72267141 to 72267164 23 - TSS region transcription start site region 109082
Tssr102827 11 72267240 to 72267247 7 + TSS region transcription start site region 102827
Tssr102828 11 72267251 to 72267267 16 + TSS region transcription start site region 102828
Tssr102829 11 72267268 to 72267273 5 + TSS region transcription start site region 102829
Tssr102830 11 72267274 to 72267300 26 + TSS region transcription start site region 102830
Tssr102831 11 72267302 to 72267320 18 + TSS region transcription start site region 102831
n-R5s70 11 72281016 to 72281131 115 + rRNA gene nuclear encoded rRNA 5S 70
4930511C11Rik 11 72281224 to 72281658 434 unclassified gene RIKEN cDNA 4930511C11 gene
Tssr102832 11 72301613 to 72301671 58 + TSS region transcription start site region 102832
Xaf1 11 72301629 to 72313733 12104 + protein coding gene XIAP associated factor 1
Tssr102833 11 72305459 to 72305474 15 + TSS region transcription start site region 102833
Tssr102834 11 72305501 to 72305517 16 + TSS region transcription start site region 102834
Tssr102835 11 72306560 to 72306575 15 + TSS region transcription start site region 102835
Tssr102836 11 72308608 to 72308629 21 + TSS region transcription start site region 102836
Cpgi3218 11 72314126 to 72314772 646 CpG island CpG island 3218
Tssr102837 11 72314438 to 72314455 17 + TSS region transcription start site region 102837
Fbxo39 11 72314444 to 72319416 4972 + protein coding gene F-box protein 39
D11Mit219 11 72318970 to 72319101 131 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 219
Alcp2 11 72318970 to 84840636 12521666 QTL alcohol preference locus 2, female specific
Gm23224 11 72340370 to 72340640 270 + unclassified non-coding RNA gene predicted gene, 23224
Tekt1 11 72344722 to 72362442 17720 - protein coding gene tektin 1
Cpgi3219 11 72361727 to 72362350 623 CpG island CpG island 3219
Tssr109083 11 72361837 to 72361899 62 - TSS region transcription start site region 109083
Tssr102838 11 72361911 to 72361926 15 + TSS region transcription start site region 102838