Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:70527157-70647160

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53 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Psmb6 11 70525367 to 70527858 2491 + protein coding gene proteasome (prosome, macropain) subunit, beta type 6
Tssr102732 11 70528914 to 70528930 16 + TSS region transcription start site region 102732
Gm40193 11 70532232 to 70532939 707 - lncRNA gene predicted gene, 40193
Cpgi3189 11 70539762 to 70540749 987 CpG island CpG island 3189
Gm10418 11 70540023 to 70540600 577 - pseudogene predicted gene 10418
Tssr102733 11 70540045 to 70540069 24 + TSS region transcription start site region 102733
Pld2 11 70540064 to 70558110 18046 + protein coding gene phospholipase D2
Tssr102734 11 70540171 to 70540194 23 + TSS region transcription start site region 102734
Tssr102735 11 70540260 to 70540315 55 + TSS region transcription start site region 102735
Tssr102736 11 70540490 to 70540508 18 + TSS region transcription start site region 102736
Tssr102737 11 70540509 to 70540546 37 + TSS region transcription start site region 102737
Tssr102738 11 70540829 to 70540840 11 + TSS region transcription start site region 102738
Tssr102739 11 70540853 to 70540888 35 + TSS region transcription start site region 102739
Tssr102740 11 70540891 to 70540907 16 + TSS region transcription start site region 102740
Tssr102741 11 70540911 to 70540918 7 + TSS region transcription start site region 102741
Cpgi3190 11 70562294 to 70563591 1297 CpG island CpG island 3190
Tssr102742 11 70562840 to 70562897 57 + TSS region transcription start site region 102742
Mink1 11 70562881 to 70614483 51602 + protein coding gene misshapen-like kinase 1 (zebrafish)
Tssr102743 11 70562898 to 70562922 24 + TSS region transcription start site region 102743
Tssr102744 11 70562935 to 70562946 11 + TSS region transcription start site region 102744
Tssr102745 11 70562980 to 70563031 51 + TSS region transcription start site region 102745
Tssr102746 11 70564335 to 70564338 3 + TSS region transcription start site region 102746
2700008L21Rik 11 70570718 to 70571339 621 unclassified gene RIKEN cDNA 2700008L21 gene
Tssr108979 11 70587157 to 70587160 3 - TSS region transcription start site region 108979
Tssr102747 11 70606656 to 70606670 14 + TSS region transcription start site region 102747
Tssr102748 11 70607101 to 70607113 12 + TSS region transcription start site region 102748
Gm12316 11 70611212 to 70613211 1999 - antisense lncRNA gene predicted gene 12316
Chrne 11 70614883 to 70619216 4333 - protein coding gene cholinergic receptor, nicotinic, epsilon polypeptide
Cpgi3191 11 70615120 to 70615901 781 CpG island CpG island 3191
Tssr108980 11 70615545 to 70615559 14 - TSS region transcription start site region 108980
Tssr108981 11 70615572 to 70615591 19 - TSS region transcription start site region 108981
Tssr108982 11 70615645 to 70615656 11 - TSS region transcription start site region 108982
Tssr108983 11 70615657 to 70615670 13 - TSS region transcription start site region 108983
Tssr108984 11 70615672 to 70615690 18 - TSS region transcription start site region 108984
Tssr108985 11 70615692 to 70615718 26 - TSS region transcription start site region 108985
Tssr102749 11 70615836 to 70615841 5 + TSS region transcription start site region 102749
4930544D05Rik 11 70615848 to 70616890 1042 + protein coding gene RIKEN cDNA 4930544D05 gene
Tssr102750 11 70615862 to 70615876 14 + TSS region transcription start site region 102750
Tssr102751 11 70615888 to 70615900 12 + TSS region transcription start site region 102751
Cpgi3192 11 70616339 to 70616699 360 CpG island CpG island 3192
Tssr108986 11 70619195 to 70619207 12 - TSS region transcription start site region 108986
D11Mit210 11 70619874 to 70620003 129 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 210
Gm12315 11 70623027 to 70625561 2534 - lincRNA gene predicted gene 12315
Tssr102752 11 70639118 to 70639175 57 + TSS region transcription start site region 102752
Gp1ba 11 70639122 to 70642036 2914 + protein coding gene glycoprotein 1b, alpha polypeptide
Tssr102753 11 70640219 to 70640246 27 + TSS region transcription start site region 102753
Tssr102754 11 70640361 to 70640372 11 + TSS region transcription start site region 102754
Slc25a11 11 70644196 to 70647479 3283 - protein coding gene solute carrier family 25 (mitochondrial carrier oxoglutarate carrier), member 11
Cpgi3193 11 70646569 to 70648125 1556 CpG island CpG island 3193
Tssr108987 11 70646864 to 70646888 24 - TSS region transcription start site region 108987
Tssr108988 11 70646889 to 70646967 78 - TSS region transcription start site region 108988
Tssr108989 11 70646972 to 70647047 75 - TSS region transcription start site region 108989
Tssr108990 11 70647052 to 70647063 11 - TSS region transcription start site region 108990