Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:70520680-72980691

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428 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Etax9 11 55394159 to 72319101 16924942 QTL ethanol induced ataxia 9
Gltpd2 11 70519209 to 70520736 1527 + protein coding gene glycolipid transfer protein domain containing 2
Cpgi3187 11 70519933 to 70520695 762 CpG island CpG island 3187
Cpgi3188 11 70525253 to 70525542 289 CpG island CpG island 3188
Tssr102728 11 70525361 to 70525394 33 + TSS region transcription start site region 102728
Psmb6 11 70525367 to 70527858 2491 + protein coding gene proteasome (prosome, macropain) subunit, beta type 6
Tssr102729 11 70525909 to 70525931 22 + TSS region transcription start site region 102729
Tssr102730 11 70525954 to 70525975 21 + TSS region transcription start site region 102730
Tssr102731 11 70525981 to 70526034 53 + TSS region transcription start site region 102731
Tssr102732 11 70528914 to 70528930 16 + TSS region transcription start site region 102732
Gm40193 11 70532232 to 70532939 707 - lncRNA gene predicted gene, 40193
Cpgi3189 11 70539762 to 70540749 987 CpG island CpG island 3189
Gm10418 11 70540023 to 70540600 577 - pseudogene predicted gene 10418
Tssr102733 11 70540045 to 70540069 24 + TSS region transcription start site region 102733
Pld2 11 70540064 to 70558110 18046 + protein coding gene phospholipase D2
Tssr102734 11 70540171 to 70540194 23 + TSS region transcription start site region 102734
Tssr102735 11 70540260 to 70540315 55 + TSS region transcription start site region 102735
Tssr102736 11 70540490 to 70540508 18 + TSS region transcription start site region 102736
Tssr102737 11 70540509 to 70540546 37 + TSS region transcription start site region 102737
Tssr102738 11 70540829 to 70540840 11 + TSS region transcription start site region 102738
Tssr102739 11 70540853 to 70540888 35 + TSS region transcription start site region 102739
Tssr102740 11 70540891 to 70540907 16 + TSS region transcription start site region 102740
Tssr102741 11 70540911 to 70540918 7 + TSS region transcription start site region 102741
Cpgi3190 11 70562294 to 70563591 1297 CpG island CpG island 3190
Tssr102742 11 70562840 to 70562897 57 + TSS region transcription start site region 102742
Mink1 11 70562881 to 70614483 51602 + protein coding gene misshapen-like kinase 1 (zebrafish)
Tssr102743 11 70562898 to 70562922 24 + TSS region transcription start site region 102743
Tssr102744 11 70562935 to 70562946 11 + TSS region transcription start site region 102744
Tssr102745 11 70562980 to 70563031 51 + TSS region transcription start site region 102745
Tssr102746 11 70564335 to 70564338 3 + TSS region transcription start site region 102746
2700008L21Rik 11 70570718 to 70571339 621 unclassified gene RIKEN cDNA 2700008L21 gene
Tssr108979 11 70587157 to 70587160 3 - TSS region transcription start site region 108979
Tssr102747 11 70606656 to 70606670 14 + TSS region transcription start site region 102747
Tssr102748 11 70607101 to 70607113 12 + TSS region transcription start site region 102748
Gm12316 11 70611212 to 70613211 1999 - antisense lncRNA gene predicted gene 12316
Chrne 11 70614883 to 70619216 4333 - protein coding gene cholinergic receptor, nicotinic, epsilon polypeptide
Cpgi3191 11 70615120 to 70615901 781 CpG island CpG island 3191
Tssr108980 11 70615545 to 70615559 14 - TSS region transcription start site region 108980
Tssr108981 11 70615572 to 70615591 19 - TSS region transcription start site region 108981
Tssr108982 11 70615645 to 70615656 11 - TSS region transcription start site region 108982
Tssr108983 11 70615657 to 70615670 13 - TSS region transcription start site region 108983
Tssr108984 11 70615672 to 70615690 18 - TSS region transcription start site region 108984
Tssr108985 11 70615692 to 70615718 26 - TSS region transcription start site region 108985
Tssr102749 11 70615836 to 70615841 5 + TSS region transcription start site region 102749
4930544D05Rik 11 70615848 to 70616890 1042 + protein coding gene RIKEN cDNA 4930544D05 gene
Tssr102750 11 70615862 to 70615876 14 + TSS region transcription start site region 102750
Tssr102751 11 70615888 to 70615900 12 + TSS region transcription start site region 102751
Cpgi3192 11 70616339 to 70616699 360 CpG island CpG island 3192
Tssr108986 11 70619195 to 70619207 12 - TSS region transcription start site region 108986
D11Mit210 11 70619874 to 70620003 129 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 210
Gm12315 11 70623027 to 70625561 2534 - lincRNA gene predicted gene 12315
Tssr102752 11 70639118 to 70639175 57 + TSS region transcription start site region 102752
Gp1ba 11 70639122 to 70642036 2914 + protein coding gene glycoprotein 1b, alpha polypeptide
Tssr102753 11 70640219 to 70640246 27 + TSS region transcription start site region 102753
Tssr102754 11 70640361 to 70640372 11 + TSS region transcription start site region 102754
Slc25a11 11 70644196 to 70647479 3283 - protein coding gene solute carrier family 25 (mitochondrial carrier oxoglutarate carrier), member 11
Cpgi3193 11 70646569 to 70648125 1556 CpG island CpG island 3193
Tssr108987 11 70646864 to 70646888 24 - TSS region transcription start site region 108987
Tssr108988 11 70646889 to 70646967 78 - TSS region transcription start site region 108988
Tssr108989 11 70646972 to 70647047 75 - TSS region transcription start site region 108989
Tssr108990 11 70647052 to 70647063 11 - TSS region transcription start site region 108990
Rnf167 11 70647243 to 70651421 4178 + protein coding gene ring finger protein 167
Tssr102755 11 70647258 to 70647294 36 + TSS region transcription start site region 102755
Tssr102756 11 70647295 to 70647306 11 + TSS region transcription start site region 102756
Tssr102757 11 70647312 to 70647323 11 + TSS region transcription start site region 102757
Tssr102758 11 70647541 to 70647581 40 + TSS region transcription start site region 102758
Tssr102759 11 70647586 to 70647607 21 + TSS region transcription start site region 102759
Tssr102760 11 70647613 to 70647635 22 + TSS region transcription start site region 102760
Tssr102761 11 70647653 to 70647658 5 + TSS region transcription start site region 102761
Tssr102762 11 70647875 to 70647904 29 + TSS region transcription start site region 102762
Tssr102763 11 70647906 to 70647918 12 + TSS region transcription start site region 102763
Tssr102764 11 70647932 to 70647948 16 + TSS region transcription start site region 102764
Tssr108991 11 70649008 to 70649015 7 - TSS region transcription start site region 108991
Tssr102765 11 70649906 to 70649927 21 + TSS region transcription start site region 102765
Tssr108992 11 70650333 to 70650337 4 - TSS region transcription start site region 108992
Tssr102766 11 70650637 to 70650650 13 + TSS region transcription start site region 102766
Tssr102767 11 70651100 to 70651124 24 + TSS region transcription start site region 102767
Pfn1 11 70651850 to 70654644 2794 - protein coding gene profilin 1
Tssr108993 11 70651869 to 70651873 4 - TSS region transcription start site region 108993
Tssr102768 11 70652036 to 70652128 92 + TSS region transcription start site region 102768
Tssr108994 11 70652076 to 70652087 11 - TSS region transcription start site region 108994
Tssr108995 11 70652098 to 70652154 56 - TSS region transcription start site region 108995
Tssr102769 11 70652131 to 70652149 18 + TSS region transcription start site region 102769
Tssr108996 11 70652164 to 70652194 30 - TSS region transcription start site region 108996
Tssr108997 11 70652196 to 70652207 11 - TSS region transcription start site region 108997
Tssr108998 11 70652214 to 70652225 11 - TSS region transcription start site region 108998
Tssr102770 11 70652807 to 70652838 31 + TSS region transcription start site region 102770
Tssr108999 11 70652822 to 70652868 46 - TSS region transcription start site region 108999
Tssr109000 11 70652877 to 70652914 37 - TSS region transcription start site region 109000
Tssr102771 11 70652925 to 70652946 21 + TSS region transcription start site region 102771
Tssr109001 11 70652926 to 70652936 10 - TSS region transcription start site region 109001
Tssr109002 11 70652948 to 70652988 40 - TSS region transcription start site region 109002
Tssr109003 11 70653002 to 70653011 9 - TSS region transcription start site region 109003
Tssr109004 11 70653032 to 70653047 15 - TSS region transcription start site region 109004
Tssr109005 11 70653232 to 70653305 73 - TSS region transcription start site region 109005
Cpgi3194 11 70653580 to 70656583 3003 CpG island CpG island 3194
Tssr109006 11 70653934 to 70654070 136 - TSS region transcription start site region 109006
Tssr102772 11 70654094 to 70654131 37 + TSS region transcription start site region 102772
Tssr109007 11 70654600 to 70654616 16 - TSS region transcription start site region 109007
Tssr109008 11 70654624 to 70654641 17 - TSS region transcription start site region 109008
Gm12319 11 70654741 to 70656493 1752 - lincRNA gene predicted gene 12319
Tssr109009 11 70654914 to 70654935 21 - TSS region transcription start site region 109009
Tssr109010 11 70655046 to 70655125 79 - TSS region transcription start site region 109010
Tssr102773 11 70655088 to 70655105 17 + TSS region transcription start site region 102773
Tssr109011 11 70655130 to 70655150 20 - TSS region transcription start site region 109011
Tssr102774 11 70655156 to 70655172 16 + TSS region transcription start site region 102774
Tssr109012 11 70655161 to 70655182 21 - TSS region transcription start site region 109012
1700029K24Rik 11 70655162 to 70655638 476 unclassified gene RIKEN cDNA 1700029K24 gene
Tssr109013 11 70655216 to 70655235 19 - TSS region transcription start site region 109013
Tssr109014 11 70656450 to 70656463 13 - TSS region transcription start site region 109014
Tssr109015 11 70656467 to 70656506 39 - TSS region transcription start site region 109015
Tssr109016 11 70656515 to 70656534 19 - TSS region transcription start site region 109016
Tssr102775 11 70656600 to 70656614 14 + TSS region transcription start site region 102775
Tssr102776 11 70656631 to 70656634 3 + TSS region transcription start site region 102776
Tssr102777 11 70656695 to 70656721 26 + TSS region transcription start site region 102777
Tssr102778 11 70656726 to 70656743 17 + TSS region transcription start site region 102778
Tssr109017 11 70656772 to 70656793 21 - TSS region transcription start site region 109017
Tssr102779 11 70656931 to 70656943 12 + TSS region transcription start site region 102779
Tssr102780 11 70656945 to 70656956 11 + TSS region transcription start site region 102780
Tssr102781 11 70657196 to 70657210 14 + TSS region transcription start site region 102781
Eno3 11 70657202 to 70662513 5311 + protein coding gene enolase 3, beta muscle
Tssr3570 11 70657755 to 70657760 5 + TSS region transcription start site region 3570
Tssr102782 11 70657816 to 70657831 15 + TSS region transcription start site region 102782
Tssr102783 11 70657834 to 70657859 25 + TSS region transcription start site region 102783
Spag7 11 70663771 to 70669416 5645 - protein coding gene sperm associated antigen 7
Tssr102784 11 70665290 to 70665323 33 + TSS region transcription start site region 102784
Cpgi3195 11 70668550 to 70669977 1427 CpG island CpG island 3195
Tssr109018 11 70668652 to 70668677 25 - TSS region transcription start site region 109018
Tssr109019 11 70669283 to 70669304 21 - TSS region transcription start site region 109019
Camta2 11 70669463 to 70688105 18642 - protein coding gene calmodulin binding transcription activator 2
Tssr109020 11 70669961 to 70670002 41 - TSS region transcription start site region 109020
Tssr109021 11 70670004 to 70670023 19 - TSS region transcription start site region 109021
Tssr109022 11 70670039 to 70670079 40 - TSS region transcription start site region 109022
Tssr102785 11 70670250 to 70670260 10 + TSS region transcription start site region 102785
Cpgi3196 11 70670355 to 70670619 264 CpG island CpG island 3196
Tssr109023 11 70671598 to 70671608 10 - TSS region transcription start site region 109023
Tssr109024 11 70675587 to 70675591 4 - TSS region transcription start site region 109024
Tssr109025 11 70681649 to 70681673 24 - TSS region transcription start site region 109025
Tssr109026 11 70681766 to 70681774 8 - TSS region transcription start site region 109026
Tssr109027 11 70683322 to 70683397 75 - TSS region transcription start site region 109027
Tssr109028 11 70683618 to 70683640 22 - TSS region transcription start site region 109028
Tssr109029 11 70683649 to 70683673 24 - TSS region transcription start site region 109029
Tssr109030 11 70683690 to 70683701 11 - TSS region transcription start site region 109030
Tssr102786 11 70683828 to 70683854 26 + TSS region transcription start site region 102786
Tssr109031 11 70686135 to 70686153 18 - TSS region transcription start site region 109031
Tssr109032 11 70686899 to 70686958 59 - TSS region transcription start site region 109032
Tssr109033 11 70687214 to 70687250 36 - TSS region transcription start site region 109033
Cpgi3197 11 70687290 to 70688340 1050 CpG island CpG island 3197
Tssr109034 11 70687917 to 70687981 64 - TSS region transcription start site region 109034
Tssr109035 11 70688060 to 70688070 10 - TSS region transcription start site region 109035
Tssr109036 11 70688097 to 70688132 35 - TSS region transcription start site region 109036
Inca1 11 70688361 to 70700155 11794 - protein coding gene inhibitor of CDK, cyclin A1 interacting protein 1
Cpgi3198 11 70699812 to 70701183 1371 CpG island CpG island 3198
Tssr109037 11 70700105 to 70700170 65 - TSS region transcription start site region 109037
Tssr102787 11 70700210 to 70700300 90 + TSS region transcription start site region 102787
Tssr102788 11 70700473 to 70700552 79 + TSS region transcription start site region 102788
Kif1c 11 70700548 to 70731964 31416 + protein coding gene kinesin family member 1C
Tssr102789 11 70700606 to 70700615 9 + TSS region transcription start site region 102789
Tssr102790 11 70702285 to 70702296 11 + TSS region transcription start site region 102790
Tssr102791 11 70702363 to 70702376 13 + TSS region transcription start site region 102791
Mir6925 11 70705990 to 70706059 69 + miRNA gene microRNA 6925
Tssr102792 11 70715811 to 70715818 7 + TSS region transcription start site region 102792
Tssr102793 11 70718944 to 70718951 7 + TSS region transcription start site region 102793
D11Die30 11 70739125 to 70739260 135 DNA segment DNA segment, Chr 11, Dietrich 30
Gm12320 11 70748705 to 70755151 6446 - lincRNA gene predicted gene 12320
Tssr109038 11 70755156 to 70755173 17 - TSS region transcription start site region 109038
Gm12318 11 70762107 to 70762379 272 - pseudogene predicted gene 12318
Gm22760 11 70762140 to 70762232 92 - miRNA gene predicted gene, 22760
Cpgi3199 11 70763660 to 70764909 1249 CpG island CpG island 3199
Tssr102794 11 70764428 to 70764483 55 + TSS region transcription start site region 102794
Zfp3 11 70764447 to 70772928 8481 + protein coding gene zinc finger protein 3
Cpgi3200 11 70777256 to 70777453 197 CpG island CpG island 3200
Tssr109039 11 70789438 to 70789458 20 - TSS region transcription start site region 109039
Scimp 11 70790932 to 70812561 21629 - protein coding gene SLP adaptor and CSK interacting membrane protein
Tssr109040 11 70812494 to 70812501 7 - TSS region transcription start site region 109040
Tssr109041 11 70812510 to 70812532 22 - TSS region transcription start site region 109041
Tssr109042 11 70812539 to 70812554 15 - TSS region transcription start site region 109042
Cpgi3201 11 70844276 to 70845734 1458 CpG island CpG island 3201
Tssr102795 11 70844745 to 70844816 71 + TSS region transcription start site region 102795
Rabep1 11 70844778 to 70943105 98327 + protein coding gene rabaptin, RAB GTPase binding effector protein 1
Tssr102796 11 70844927 to 70844959 32 + TSS region transcription start site region 102796
D11Die31 11 70857796 to 70857950 154 DNA segment DNA segment, Chr 11, Dietrich 31
Gm19967 11 70864660 to 70872754 8094 + sense intronic lncRNA gene predicted gene, 19967
Tssr102797 11 70869661 to 70869669 8 + TSS region transcription start site region 102797
Tssr102798 11 70877095 to 70877124 29 + TSS region transcription start site region 102798
Tssr102799 11 70879412 to 70879426 14 + TSS region transcription start site region 102799
Rpl23a-ps2 11 70879428 to 70879901 473 + pseudogene ribosomal protein L23A, pseudogene 2
Tssr102800 11 70884767 to 70884785 18 + TSS region transcription start site region 102800
Tssr102801 11 70884803 to 70884824 21 + TSS region transcription start site region 102801
Gm12322 11 70909257 to 70909645 388 - pseudogene predicted gene 12322
Tssr102802 11 70929793 to 70929805 12 + TSS region transcription start site region 102802
Nup88 11 70943058 to 70969973 26915 - protein coding gene nucleoporin 88
D11Die32 11 70953363 to 70953506 143 DNA segment DNA segment, Chr 11, Dietrich 32
D11Mit320 11 70953368 to 70953486 118 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 320
D11Die33 11 70954150 to 70954353 203 DNA segment DNA segment, Chr 11, Dietrich 33
Cpgi3202 11 70969449 to 70970873 1424 CpG island CpG island 3202
Tssr109043 11 70969953 to 70969978 25 - TSS region transcription start site region 109043
Tssr102803 11 70970181 to 70970196 15 + TSS region transcription start site region 102803
Rpain 11 70970213 to 70977833 7620 + protein coding gene RPA interacting protein
Tssr102804 11 70970467 to 70970517 50 + TSS region transcription start site region 102804