Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:70455829-70625840

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110 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cxcl16 11 70454232 to 70459984 5752 - protein coding gene chemokine (C-X-C motif) ligand 16
Tssr102698 11 70455858 to 70455892 34 + TSS region transcription start site region 102698
Tssr108959 11 70455931 to 70455997 66 - TSS region transcription start site region 108959
Tssr102699 11 70456028 to 70456039 11 + TSS region transcription start site region 102699
Tssr102700 11 70458782 to 70458797 15 + TSS region transcription start site region 102700
Tssr108960 11 70458788 to 70458802 14 - TSS region transcription start site region 108960
Tssr108961 11 70458812 to 70458848 36 - TSS region transcription start site region 108961
Tssr102701 11 70458978 to 70458989 11 + TSS region transcription start site region 102701
Cpgi3185 11 70459391 to 70460177 786 CpG island CpG island 3185
Tssr102702 11 70459426 to 70459527 101 + TSS region transcription start site region 102702
Tssr108962 11 70459501 to 70459514 13 - TSS region transcription start site region 108962
Tssr3569 11 70459603 to 70459607 4 + TSS region transcription start site region 3569
Tssr102703 11 70459611 to 70459633 22 + TSS region transcription start site region 102703
Zmynd15 11 70459622 to 70466202 6580 + protein coding gene zinc finger, MYND-type containing 15
Tssr108963 11 70459630 to 70459652 22 - TSS region transcription start site region 108963
Tssr108964 11 70459656 to 70459705 49 - TSS region transcription start site region 108964
Tssr102704 11 70459709 to 70459727 18 + TSS region transcription start site region 102704
Tssr108965 11 70459717 to 70459730 13 - TSS region transcription start site region 108965
Tssr108966 11 70459749 to 70459767 18 - TSS region transcription start site region 108966
Tssr102705 11 70459779 to 70459799 20 + TSS region transcription start site region 102705
Tssr108967 11 70459801 to 70459812 11 - TSS region transcription start site region 108967
Tssr108968 11 70459832 to 70459841 9 - TSS region transcription start site region 108968
Tssr108969 11 70459858 to 70459869 11 - TSS region transcription start site region 108969
Tssr108970 11 70459879 to 70459919 40 - TSS region transcription start site region 108970
Tssr102706 11 70459899 to 70459956 57 + TSS region transcription start site region 102706
Tssr108971 11 70459925 to 70459949 24 - TSS region transcription start site region 108971
Tssr108972 11 70459957 to 70459984 27 - TSS region transcription start site region 108972
Tssr102707 11 70459960 to 70459985 25 + TSS region transcription start site region 102707
Tssr108973 11 70459986 to 70460001 15 - TSS region transcription start site region 108973
Tssr108974 11 70460006 to 70460013 7 - TSS region transcription start site region 108974
Tssr102708 11 70460071 to 70460112 41 + TSS region transcription start site region 102708
Tssr102709 11 70460142 to 70460187 45 + TSS region transcription start site region 102709
Tssr102710 11 70463888 to 70463929 41 + TSS region transcription start site region 102710
Tssr102711 11 70465347 to 70465375 28 + TSS region transcription start site region 102711
Cpgi3186 11 70465756 to 70466167 411 CpG island CpG island 3186
Tssr102712 11 70468111 to 70468136 25 + TSS region transcription start site region 102712
Tssr102713 11 70469001 to 70469013 12 + TSS region transcription start site region 102713
Tssr108975 11 70489859 to 70489863 4 - TSS region transcription start site region 108975
Tssr102714 11 70497798 to 70497850 52 + TSS region transcription start site region 102714
Pgia7 11 70499762 to 70499911 149 QTL proteoglycan induced arthritis 7
D11Mit90 11 70499762 to 70499911 149 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 90
Tssr102715 11 70505255 to 70505312 57 + TSS region transcription start site region 102715
Tm4sf5 11 70505274 to 70511183 5909 + protein coding gene transmembrane 4 superfamily member 5
Tssr102716 11 70505314 to 70505332 18 + TSS region transcription start site region 102716
Tssr102717 11 70509691 to 70509793 102 + TSS region transcription start site region 102717
Tssr102718 11 70509961 to 70509990 29 + TSS region transcription start site region 102718
Tssr102719 11 70510180 to 70510199 19 + TSS region transcription start site region 102719
Tssr102720 11 70510245 to 70510255 10 + TSS region transcription start site region 102720
Tssr102721 11 70510837 to 70510849 12 + TSS region transcription start site region 102721
Tssr102722 11 70511062 to 70511075 13 + TSS region transcription start site region 102722
Tssr102723 11 70511090 to 70511101 11 + TSS region transcription start site region 102723
Tssr108976 11 70511168 to 70511182 14 - TSS region transcription start site region 108976
Vmo1 11 70513516 to 70514616 1100 - protein coding gene vitelline membrane outer layer 1 homolog (chicken)
Tssr108977 11 70514608 to 70514616 8 - TSS region transcription start site region 108977
Tssr108978 11 70514625 to 70514634 9 - TSS region transcription start site region 108978
Gm12317 11 70517725 to 70518043 318 - pseudogene predicted gene 12317
Tssr102724 11 70519156 to 70519161 5 + TSS region transcription start site region 102724
Tssr102725 11 70519168 to 70519175 7 + TSS region transcription start site region 102725
Tssr102726 11 70519183 to 70519203 20 + TSS region transcription start site region 102726
Gltpd2 11 70519209 to 70520736 1527 + protein coding gene glycolipid transfer protein domain containing 2
Tssr102727 11 70519619 to 70519640 21 + TSS region transcription start site region 102727
Cpgi3187 11 70519933 to 70520695 762 CpG island CpG island 3187
Cpgi3188 11 70525253 to 70525542 289 CpG island CpG island 3188
Tssr102728 11 70525361 to 70525394 33 + TSS region transcription start site region 102728
Psmb6 11 70525367 to 70527858 2491 + protein coding gene proteasome (prosome, macropain) subunit, beta type 6
Tssr102729 11 70525909 to 70525931 22 + TSS region transcription start site region 102729
Tssr102730 11 70525954 to 70525975 21 + TSS region transcription start site region 102730
Tssr102731 11 70525981 to 70526034 53 + TSS region transcription start site region 102731
Tssr102732 11 70528914 to 70528930 16 + TSS region transcription start site region 102732
Gm40193 11 70532232 to 70532939 707 - lncRNA gene predicted gene, 40193
Cpgi3189 11 70539762 to 70540749 987 CpG island CpG island 3189
Gm10418 11 70540023 to 70540600 577 - pseudogene predicted gene 10418
Tssr102733 11 70540045 to 70540069 24 + TSS region transcription start site region 102733
Pld2 11 70540064 to 70558110 18046 + protein coding gene phospholipase D2
Tssr102734 11 70540171 to 70540194 23 + TSS region transcription start site region 102734
Tssr102735 11 70540260 to 70540315 55 + TSS region transcription start site region 102735
Tssr102736 11 70540490 to 70540508 18 + TSS region transcription start site region 102736
Tssr102737 11 70540509 to 70540546 37 + TSS region transcription start site region 102737
Tssr102738 11 70540829 to 70540840 11 + TSS region transcription start site region 102738
Tssr102739 11 70540853 to 70540888 35 + TSS region transcription start site region 102739
Tssr102740 11 70540891 to 70540907 16 + TSS region transcription start site region 102740
Tssr102741 11 70540911 to 70540918 7 + TSS region transcription start site region 102741
Cpgi3190 11 70562294 to 70563591 1297 CpG island CpG island 3190
Tssr102742 11 70562840 to 70562897 57 + TSS region transcription start site region 102742
Mink1 11 70562881 to 70614483 51602 + protein coding gene misshapen-like kinase 1 (zebrafish)
Tssr102743 11 70562898 to 70562922 24 + TSS region transcription start site region 102743
Tssr102744 11 70562935 to 70562946 11 + TSS region transcription start site region 102744
Tssr102745 11 70562980 to 70563031 51 + TSS region transcription start site region 102745
Tssr102746 11 70564335 to 70564338 3 + TSS region transcription start site region 102746
2700008L21Rik 11 70570718 to 70571339 621 unclassified gene RIKEN cDNA 2700008L21 gene
Tssr108979 11 70587157 to 70587160 3 - TSS region transcription start site region 108979
Tssr102747 11 70606656 to 70606670 14 + TSS region transcription start site region 102747
Tssr102748 11 70607101 to 70607113 12 + TSS region transcription start site region 102748
Gm12316 11 70611212 to 70613211 1999 - antisense lncRNA gene predicted gene 12316
Chrne 11 70614883 to 70619216 4333 - protein coding gene cholinergic receptor, nicotinic, epsilon polypeptide
Cpgi3191 11 70615120 to 70615901 781 CpG island CpG island 3191
Tssr108980 11 70615545 to 70615559 14 - TSS region transcription start site region 108980
Tssr108981 11 70615572 to 70615591 19 - TSS region transcription start site region 108981
Tssr108982 11 70615645 to 70615656 11 - TSS region transcription start site region 108982
Tssr108983 11 70615657 to 70615670 13 - TSS region transcription start site region 108983
Tssr108984 11 70615672 to 70615690 18 - TSS region transcription start site region 108984
Tssr108985 11 70615692 to 70615718 26 - TSS region transcription start site region 108985
Tssr102749 11 70615836 to 70615841 5 + TSS region transcription start site region 102749
4930544D05Rik 11 70615848 to 70616890 1042 + protein coding gene RIKEN cDNA 4930544D05 gene
Tssr102750 11 70615862 to 70615876 14 + TSS region transcription start site region 102750
Tssr102751 11 70615888 to 70615900 12 + TSS region transcription start site region 102751
Cpgi3192 11 70616339 to 70616699 360 CpG island CpG island 3192
Tssr108986 11 70619195 to 70619207 12 - TSS region transcription start site region 108986
D11Mit210 11 70619874 to 70620003 129 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 210
Gm12315 11 70623027 to 70625561 2534 - lincRNA gene predicted gene 12315