Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:70162570-70312600

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Clec10a 11 70166623 to 70170836 4213 + protein coding gene C-type lectin domain family 10, member A
Tssr102659 11 70166648 to 70166663 15 + TSS region transcription start site region 102659
Tssr102660 11 70166696 to 70166707 11 + TSS region transcription start site region 102660
Tssr102661 11 70166766 to 70166784 18 + TSS region transcription start site region 102661
Tssr102662 11 70167184 to 70167198 14 + TSS region transcription start site region 102662
Tssr102663 11 70167202 to 70167222 20 + TSS region transcription start site region 102663
Tssr108914 11 70185221 to 70185242 21 - TSS region transcription start site region 108914
Cpgi3171 11 70189576 to 70190024 448 CpG island CpG island 3171
Tssr108915 11 70191323 to 70191326 3 - TSS region transcription start site region 108915
Tssr102664 11 70198872 to 70198877 5 + TSS region transcription start site region 102664
Tssr108916 11 70205030 to 70205038 8 - TSS region transcription start site region 108916
Tssr102665 11 70207212 to 70207219 7 + TSS region transcription start site region 102665
Cpgi3172 11 70213793 to 70215791 1998 CpG island CpG island 3172
Slc16a11 11 70213910 to 70216414 2504 + protein coding gene solute carrier family 16 (monocarboxylic acid transporters), member 11
Tssr102666 11 70213923 to 70213944 21 + TSS region transcription start site region 102666
Tssr102667 11 70214105 to 70214132 27 + TSS region transcription start site region 102667
Tssr102668 11 70214136 to 70214162 26 + TSS region transcription start site region 102668
Tssr102669 11 70214953 to 70214964 11 + TSS region transcription start site region 102669
Tssr102670 11 70214974 to 70214982 8 + TSS region transcription start site region 102670
Tssr3567 11 70214982 to 70214992 10 + TSS region transcription start site region 3567
Tssr102671 11 70215012 to 70215019 7 + TSS region transcription start site region 102671
Tssr102672 11 70215021 to 70215026 5 + TSS region transcription start site region 102672
Tssr102673 11 70215030 to 70215058 28 + TSS region transcription start site region 102673
Slc16a13 11 70216789 to 70221064 4275 - protein coding gene solute carrier family 16 (monocarboxylic acid transporters), member 13
Tssr108917 11 70219045 to 70219062 17 - TSS region transcription start site region 108917
Cpgi3173 11 70220246 to 70220802 556 CpG island CpG island 3173
Tssr108918 11 70220697 to 70220709 12 - TSS region transcription start site region 108918
Tssr108919 11 70220776 to 70220790 14 - TSS region transcription start site region 108919
Tssr108920 11 70220794 to 70220832 38 - TSS region transcription start site region 108920
Tssr108921 11 70220969 to 70221027 58 - TSS region transcription start site region 108921
Tssr102674 11 70221224 to 70221240 16 + TSS region transcription start site region 102674
Bcl6b 11 70224128 to 70229798 5670 - protein coding gene B cell CLL/lymphoma 6, member B
Cpgi3174 11 70226471 to 70226986 515 CpG island CpG island 3174
Tssr108922 11 70227289 to 70227297 8 - TSS region transcription start site region 108922
Cpgi3175 11 70228929 to 70229619 690 CpG island CpG island 3175
Tssr108923 11 70229755 to 70229761 6 - TSS region transcription start site region 108923
Tssr108924 11 70230216 to 70230241 25 - TSS region transcription start site region 108924
Cpgi3176 11 70230328 to 70230743 415 CpG island CpG island 3176
Mir497b 11 70234692 to 70234816 124 - miRNA gene microRNA 497b
Mir497 11 70234717 to 70234800 83 + miRNA gene microRNA 497
Mirc27 11 70234717 to 70235135 418 complex/cluster/region microRNA cluster 27, including Mir497 through Mir195a
Mir195a 11 70235042 to 70235135 93 + miRNA gene microRNA 195a
Gm21988 11 70235206 to 70239830 4624 - protein coding gene predicted gene 21988
0610010K14Rik 11 70235206 to 70237914 2708 - protein coding gene RIKEN cDNA 0610010K14 gene
Cpgi3177 11 70237283 to 70238530 1247 CpG island CpG island 3177
Tssr108925 11 70237570 to 70237600 30 - TSS region transcription start site region 108925
Tssr108926 11 70237605 to 70237633 28 - TSS region transcription start site region 108926
Tssr108927 11 70237638 to 70237651 13 - TSS region transcription start site region 108927
Tssr108928 11 70237761 to 70237781 20 - TSS region transcription start site region 108928
Tssr108929 11 70237852 to 70237885 33 - TSS region transcription start site region 108929
Tssr108930 11 70237886 to 70237919 33 - TSS region transcription start site region 108930
Tssr102675 11 70238010 to 70238031 21 + TSS region transcription start site region 102675
Rnasek 11 70238124 to 70239842 1718 - protein coding gene ribonuclease, RNase K
Tssr108931 11 70238305 to 70238322 17 - TSS region transcription start site region 108931
Tssr108932 11 70238372 to 70238388 16 - TSS region transcription start site region 108932
Tssr108933 11 70238393 to 70238420 27 - TSS region transcription start site region 108933
Tssr108934 11 70238464 to 70238475 11 - TSS region transcription start site region 108934
Tssr108935 11 70238958 to 70238970 12 - TSS region transcription start site region 108935
Gm40191 11 70239001 to 70269430 30429 + lncRNA gene predicted gene, 40191
Tssr108936 11 70239207 to 70239219 12 - TSS region transcription start site region 108936
Cpgi3178 11 70239505 to 70240102 597 CpG island CpG island 3178
Tssr108937 11 70239707 to 70239712 5 - TSS region transcription start site region 108937
Tssr108938 11 70239766 to 70239772 6 - TSS region transcription start site region 108938
Tssr108939 11 70239794 to 70239860 66 - TSS region transcription start site region 108939
Alox12 11 70241457 to 70255353 13896 - protein coding gene arachidonate 12-lipoxygenase
Cpgi3179 11 70254479 to 70255403 924 CpG island CpG island 3179
Tssr108940 11 70255329 to 70255347 18 - TSS region transcription start site region 108940
Gm32992 11 70280244 to 70285954 5710 + lncRNA gene predicted gene, 32992
Gm33048 11 70287377 to 70288384 1007 + lncRNA gene predicted gene, 33048
Gm40192 11 70290987 to 70294239 3252 + lncRNA gene predicted gene, 40192