Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:69970047-72810178

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712 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Etax9 11 55394159 to 72319101 16924942 QTL ethanol induced ataxia 9
Elp5 11 69968224 to 69981291 13067 - protein coding gene elongator acetyltransferase complex subunit 5
Tssr102586 11 69976652 to 69976668 16 + TSS region transcription start site region 102586
Cpgi3163 11 69980079 to 69981687 1608 CpG island CpG island 3163
Tssr108900 11 69980218 to 69980229 11 - TSS region transcription start site region 108900
Tssr108901 11 69980233 to 69980271 38 - TSS region transcription start site region 108901
Tssr108902 11 69980274 to 69980290 16 - TSS region transcription start site region 108902
Tssr108903 11 69980468 to 69980575 107 - TSS region transcription start site region 108903
Gm44349 11 69980692 to 69980814 122 + miRNA gene predicted gene, 44349
Tssr102587 11 69980751 to 69980762 11 + TSS region transcription start site region 102587
Tssr102588 11 69980768 to 69980779 11 + TSS region transcription start site region 102588
Tssr102589 11 69980780 to 69980828 48 + TSS region transcription start site region 102589
Tssr102590 11 69980830 to 69980841 11 + TSS region transcription start site region 102590
Tssr102591 11 69981039 to 69981086 47 + TSS region transcription start site region 102591
Tssr102592 11 69981127 to 69981214 87 + TSS region transcription start site region 102592
Ctdnep1 11 69981168 to 69990601 9433 + protein coding gene CTD nuclear envelope phosphatase 1
Tssr108904 11 69981228 to 69981240 12 - TSS region transcription start site region 108904
Tssr108905 11 69981242 to 69981264 22 - TSS region transcription start site region 108905
Tssr102593 11 69981255 to 69981260 5 + TSS region transcription start site region 102593
Tssr108906 11 69981281 to 69981293 12 - TSS region transcription start site region 108906
Tssr102594 11 69981332 to 69981369 37 + TSS region transcription start site region 102594
Tssr102595 11 69981381 to 69981390 9 + TSS region transcription start site region 102595
Tssr102596 11 69981460 to 69981471 11 + TSS region transcription start site region 102596
Tssr102597 11 69981475 to 69981480 5 + TSS region transcription start site region 102597
Tssr102598 11 69981491 to 69981502 11 + TSS region transcription start site region 102598
Tssr102599 11 69981522 to 69981533 11 + TSS region transcription start site region 102599
Tssr108907 11 69982630 to 69982669 39 - TSS region transcription start site region 108907
Tssr102600 11 69990451 to 69990483 32 + TSS region transcription start site region 102600
Cpgi3164 11 69990895 to 69991862 967 CpG island CpG island 3164
Tssr102601 11 69991061 to 69991074 13 + TSS region transcription start site region 102601
Gabarap 11 69991370 to 69994949 3579 + protein coding gene gamma-aminobutyric acid receptor associated protein
Tssr102602 11 69991583 to 69991630 47 + TSS region transcription start site region 102602
Tssr102603 11 69991633 to 69991638 5 + TSS region transcription start site region 102603
Tssr102604 11 69991641 to 69991674 33 + TSS region transcription start site region 102604
Tssr102605 11 69991675 to 69991684 9 + TSS region transcription start site region 102605
Tssr102606 11 69991698 to 69991712 14 + TSS region transcription start site region 102606
Tssr102607 11 69992367 to 69992385 18 + TSS region transcription start site region 102607
Tssr102608 11 69992510 to 69992541 31 + TSS region transcription start site region 102608
Tssr102609 11 69992575 to 69992640 65 + TSS region transcription start site region 102609
Tssr102610 11 69994455 to 69994466 11 + TSS region transcription start site region 102610
Tssr102611 11 69994479 to 69994490 11 + TSS region transcription start site region 102611
Tssr102612 11 69994506 to 69994517 11 + TSS region transcription start site region 102612
Tssr102613 11 69994539 to 69994556 17 + TSS region transcription start site region 102613
Tssr102614 11 69994585 to 69994596 11 + TSS region transcription start site region 102614
Tssr102615 11 69994601 to 69994613 12 + TSS region transcription start site region 102615
Tssr102616 11 69994675 to 69994724 49 + TSS region transcription start site region 102616
Tssr102617 11 69994734 to 69994743 9 + TSS region transcription start site region 102617
Cpgi3165 11 69995469 to 69997685 2216 CpG island CpG island 3165
Phf23 11 69995777 to 70000009 4232 + protein coding gene PHD finger protein 23
Tssr102618 11 69995798 to 69995812 14 + TSS region transcription start site region 102618
Tssr102619 11 69995826 to 69995870 44 + TSS region transcription start site region 102619
Tssr102620 11 69995874 to 69995897 23 + TSS region transcription start site region 102620
Tssr108908 11 69996870 to 69996875 5 - TSS region transcription start site region 108908
Tssr108909 11 69997244 to 69997258 14 - TSS region transcription start site region 108909
Tssr108910 11 69997293 to 69997328 35 - TSS region transcription start site region 108910
Tssr102621 11 69997441 to 69997501 60 + TSS region transcription start site region 102621
Tssr102622 11 69998367 to 69998388 21 + TSS region transcription start site region 102622
Tssr102623 11 69999316 to 69999330 14 + TSS region transcription start site region 102623
Cpgi3166 11 70000346 to 70001134 788 CpG island CpG island 3166
Tssr102624 11 70000578 to 70000624 46 + TSS region transcription start site region 102624
Dvl2 11 70000626 to 70010109 9483 + protein coding gene dishevelled segment polarity protein 2
Tssr102625 11 70000643 to 70000660 17 + TSS region transcription start site region 102625
Tssr102626 11 70000779 to 70000800 21 + TSS region transcription start site region 102626
Tssr102627 11 70000804 to 70000831 27 + TSS region transcription start site region 102627
Acadvl 11 70010183 to 70015411 5228 - protein coding gene acyl-Coenzyme A dehydrogenase, very long chain
Mir324 11 70012043 to 70012131 88 + miRNA gene microRNA 324
Cpgi3167 11 70015025 to 70015544 519 CpG island CpG island 3167
Tssr108911 11 70015346 to 70015435 89 - TSS region transcription start site region 108911
Tssr102628 11 70017131 to 70017146 15 + TSS region transcription start site region 102628
Tssr102629 11 70017199 to 70017208 9 + TSS region transcription start site region 102629
Tssr102630 11 70018070 to 70018092 22 + TSS region transcription start site region 102630
Tssr102631 11 70018396 to 70018399 3 + TSS region transcription start site region 102631
Tssr102632 11 70018421 to 70018484 63 + TSS region transcription start site region 102632
Dlg4 11 70018455 to 70045535 27080 + protein coding gene discs large MAGUK scaffold protein 4
Tssr102633 11 70018834 to 70018847 13 + TSS region transcription start site region 102633
Cpgi3168 11 70021255 to 70021861 606 CpG island CpG island 3168
Cpgi3169 11 70023851 to 70024402 551 CpG island CpG island 3169
Tssr102634 11 70023922 to 70023958 36 + TSS region transcription start site region 102634
Cpgi3170 11 70026764 to 70027141 377 CpG island CpG island 3170
Tssr102635 11 70026815 to 70026853 38 + TSS region transcription start site region 102635
Tssr102636 11 70029813 to 70029837 24 + TSS region transcription start site region 102636
Tssr102637 11 70030072 to 70030083 11 + TSS region transcription start site region 102637
Tssr102638 11 70030130 to 70030141 11 + TSS region transcription start site region 102638
Tssr102639 11 70031374 to 70031385 11 + TSS region transcription start site region 102639
Tssr102640 11 70034964 to 70034972 8 + TSS region transcription start site region 102640
Tssr102641 11 70038531 to 70038553 22 + TSS region transcription start site region 102641
Tssr102642 11 70038562 to 70038587 25 + TSS region transcription start site region 102642
D11Mit243a 11 70041158 to 70041290 132 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 243a
D11Mit243b 11 70041223 to 70041290 67 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 243b
Tssr102643 11 70043096 to 70043107 11 + TSS region transcription start site region 102643
Tssr102644 11 70044601 to 70044603 2 + TSS region transcription start site region 102644
Tssr102645 11 70045319 to 70045323 4 + TSS region transcription start site region 102645
Tssr102646 11 70048410 to 70048413 3 + TSS region transcription start site region 102646
Asgr1 11 70054085 to 70057894 3809 + protein coding gene asialoglycoprotein receptor 1
Tssr102647 11 70054334 to 70054360 26 + TSS region transcription start site region 102647
Tssr102648 11 70054362 to 70054377 15 + TSS region transcription start site region 102648
Tssr102649 11 70054385 to 70054466 81 + TSS region transcription start site region 102649
Tssr102650 11 70056068 to 70056084 16 + TSS region transcription start site region 102650
Tssr102651 11 70056854 to 70056895 41 + TSS region transcription start site region 102651
Gm32946 11 70077671 to 70091265 13594 + lncRNA gene predicted gene, 32946
Tssr108912 11 70092123 to 70092135 12 - TSS region transcription start site region 108912
Tssr102652 11 70092634 to 70092643 9 + TSS region transcription start site region 102652
Asgr2 11 70092644 to 70106187 13543 + protein coding gene asialoglycoprotein receptor 2
Tssr102653 11 70092646 to 70092651 5 + TSS region transcription start site region 102653
Tssr102654 11 70092653 to 70092698 45 + TSS region transcription start site region 102654
Tssr102655 11 70092705 to 70092749 44 + TSS region transcription start site region 102655
Tssr102656 11 70106272 to 70106274 2 + TSS region transcription start site region 102656
Gm12311 11 70128969 to 70129342 373 - pseudogene predicted gene 12311
Tssr102657 11 70130143 to 70130163 20 + TSS region transcription start site region 102657
Mgl2 11 70130329 to 70137550 7221 + protein coding gene macrophage galactose N-acetyl-galactosamine specific lectin 2
Tssr102658 11 70130392 to 70130411 19 + TSS region transcription start site region 102658
Tssr108913 11 70153581 to 70153582 1 - TSS region transcription start site region 108913
Clec10a 11 70166623 to 70170836 4213 + protein coding gene C-type lectin domain family 10, member A
Tssr102659 11 70166648 to 70166663 15 + TSS region transcription start site region 102659
Tssr102660 11 70166696 to 70166707 11 + TSS region transcription start site region 102660
Tssr102661 11 70166766 to 70166784 18 + TSS region transcription start site region 102661
Tssr102662 11 70167184 to 70167198 14 + TSS region transcription start site region 102662
Tssr102663 11 70167202 to 70167222 20 + TSS region transcription start site region 102663
Tssr108914 11 70185221 to 70185242 21 - TSS region transcription start site region 108914
Cpgi3171 11 70189576 to 70190024 448 CpG island CpG island 3171
Tssr108915 11 70191323 to 70191326 3 - TSS region transcription start site region 108915
Tssr102664 11 70198872 to 70198877 5 + TSS region transcription start site region 102664
Tssr108916 11 70205030 to 70205038 8 - TSS region transcription start site region 108916
Tssr102665 11 70207212 to 70207219 7 + TSS region transcription start site region 102665
Cpgi3172 11 70213793 to 70215791 1998 CpG island CpG island 3172
Slc16a11 11 70213910 to 70216414 2504 + protein coding gene solute carrier family 16 (monocarboxylic acid transporters), member 11
Tssr102666 11 70213923 to 70213944 21 + TSS region transcription start site region 102666
Tssr102667 11 70214105 to 70214132 27 + TSS region transcription start site region 102667
Tssr102668 11 70214136 to 70214162 26 + TSS region transcription start site region 102668
Tssr102669 11 70214953 to 70214964 11 + TSS region transcription start site region 102669
Tssr102670 11 70214974 to 70214982 8 + TSS region transcription start site region 102670
Tssr3567 11 70214982 to 70214992 10 + TSS region transcription start site region 3567
Tssr102671 11 70215012 to 70215019 7 + TSS region transcription start site region 102671
Tssr102672 11 70215021 to 70215026 5 + TSS region transcription start site region 102672
Tssr102673 11 70215030 to 70215058 28 + TSS region transcription start site region 102673
Slc16a13 11 70216789 to 70221064 4275 - protein coding gene solute carrier family 16 (monocarboxylic acid transporters), member 13
Tssr108917 11 70219045 to 70219062 17 - TSS region transcription start site region 108917
Cpgi3173 11 70220246 to 70220802 556 CpG island CpG island 3173
Tssr108918 11 70220697 to 70220709 12 - TSS region transcription start site region 108918
Tssr108919 11 70220776 to 70220790 14 - TSS region transcription start site region 108919
Tssr108920 11 70220794 to 70220832 38 - TSS region transcription start site region 108920
Tssr108921 11 70220969 to 70221027 58 - TSS region transcription start site region 108921
Tssr102674 11 70221224 to 70221240 16 + TSS region transcription start site region 102674
Bcl6b 11 70224128 to 70229798 5670 - protein coding gene B cell CLL/lymphoma 6, member B
Cpgi3174 11 70226471 to 70226986 515 CpG island CpG island 3174
Tssr108922 11 70227289 to 70227297 8 - TSS region transcription start site region 108922
Cpgi3175 11 70228929 to 70229619 690 CpG island CpG island 3175
Tssr108923 11 70229755 to 70229761 6 - TSS region transcription start site region 108923
Tssr108924 11 70230216 to 70230241 25 - TSS region transcription start site region 108924
Cpgi3176 11 70230328 to 70230743 415 CpG island CpG island 3176
Mir497b 11 70234692 to 70234816 124 - miRNA gene microRNA 497b
Mirc27 11 70234717 to 70235135 418 complex/cluster/region microRNA cluster 27, including Mir497 through Mir195a
Mir497 11 70234717 to 70234800 83 + miRNA gene microRNA 497
Mir195a 11 70235042 to 70235135 93 + miRNA gene microRNA 195a
0610010K14Rik 11 70235206 to 70237914 2708 - protein coding gene RIKEN cDNA 0610010K14 gene
Gm21988 11 70235206 to 70239830 4624 - protein coding gene predicted gene 21988
Cpgi3177 11 70237283 to 70238530 1247 CpG island CpG island 3177
Tssr108925 11 70237570 to 70237600 30 - TSS region transcription start site region 108925
Tssr108926 11 70237605 to 70237633 28 - TSS region transcription start site region 108926
Tssr108927 11 70237638 to 70237651 13 - TSS region transcription start site region 108927
Tssr108928 11 70237761 to 70237781 20 - TSS region transcription start site region 108928
Tssr108929 11 70237852 to 70237885 33 - TSS region transcription start site region 108929
Tssr108930 11 70237886 to 70237919 33 - TSS region transcription start site region 108930
Tssr102675 11 70238010 to 70238031 21 + TSS region transcription start site region 102675
Rnasek 11 70238124 to 70239842 1718 - protein coding gene ribonuclease, RNase K
Tssr108931 11 70238305 to 70238322 17 - TSS region transcription start site region 108931
Tssr108932 11 70238372 to 70238388 16 - TSS region transcription start site region 108932
Tssr108933 11 70238393 to 70238420 27 - TSS region transcription start site region 108933
Tssr108934 11 70238464 to 70238475 11 - TSS region transcription start site region 108934
Tssr108935 11 70238958 to 70238970 12 - TSS region transcription start site region 108935
Gm40191 11 70239001 to 70269430 30429 + lncRNA gene predicted gene, 40191
Tssr108936 11 70239207 to 70239219 12 - TSS region transcription start site region 108936
Cpgi3178 11 70239505 to 70240102 597 CpG island CpG island 3178
Tssr108937 11 70239707 to 70239712 5 - TSS region transcription start site region 108937
Tssr108938 11 70239766 to 70239772 6 - TSS region transcription start site region 108938
Tssr108939 11 70239794 to 70239860 66 - TSS region transcription start site region 108939
Alox12 11 70241457 to 70255353 13896 - protein coding gene arachidonate 12-lipoxygenase
Cpgi3179 11 70254479 to 70255403 924 CpG island CpG island 3179
Tssr108940 11 70255329 to 70255347 18 - TSS region transcription start site region 108940
Gm32992 11 70280244 to 70285954 5710 + lncRNA gene predicted gene, 32992
Gm33048 11 70287377 to 70288384 1007 + lncRNA gene predicted gene, 33048
Gm40192 11 70290987 to 70294239 3252 + lncRNA gene predicted gene, 40192
Alox12e 11 70315610 to 70322628 7018 - protein coding gene arachidonate lipoxygenase, epidermal
Cpgi3180 11 70321657 to 70322423 766 CpG island CpG island 3180
Tssr108941 11 70322464 to 70322476 12 - TSS region transcription start site region 108941
Tssr108942 11 70322502 to 70322514 12 - TSS region transcription start site region 108942
Tssr108943 11 70322520 to 70322537 17 - TSS region transcription start site region 108943
Alox15 11 70344152 to 70352031 7879 - protein coding gene arachidonate 15-lipoxygenase
Tssr108944 11 70345702 to 70345723 21 - TSS region transcription start site region 108944
Cpgi3181 11 70351844 to 70352003 159 CpG island CpG island 3181
Tssr108945 11 70352029 to 70352032 3 - TSS region transcription start site region 108945
Gm12312 11 70358138 to 70358781 643 + pseudogene predicted gene 12312
Tssr108946 11 70358407 to 70358414 7 - TSS region transcription start site region 108946
Tssr108947 11 70381959 to 70381963 4 - TSS region transcription start site region 108947
Pelp1 11 70392883 to 70410031 17148 - protein coding gene proline, glutamic acid and leucine rich protein 1
Tssr108948 11 70394411 to 70394428 17 - TSS region transcription start site region 108948
Tssr108949 11 70407139 to 70407143 4 - TSS region transcription start site region 108949
Tssr108950 11 70408943 to 70408949 6 - TSS region transcription start site region 108950
Cpgi3182 11 70409479 to 70410493 1014 CpG island CpG island 3182
Tssr108951 11 70410010 to 70410042 32 - TSS region transcription start site region 108951