Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:69778525-69898567

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82 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lmrq4 11 12318637 to 69794121 57475484 QTL Leishmania major resistance QTL 4
Char8 11 35687789 to 69794161 34106372 QTL P. chabaudi malaria resistance QTL 8
Zbtb4 11 69765912 to 69784023 18111 + protein coding gene zinc finger and BTB domain containing 4
Cpgi3146 11 69778328 to 69778582 254 CpG island CpG island 3146
Chrnb1 11 69784036 to 69795943 11907 - protein coding gene cholinergic receptor, nicotinic, beta polypeptide 1 (muscle)
D11Nds16 11 69792326 to 69792489 163 DNA segment DNA segment, Chr 11, Nuffield Department of Surgery 16
D11Mit29 11 69793981 to 69794121 140 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 29
D11Mit30 11 69793984 to 69794161 177 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 30
Cpgi3147 11 69795326 to 69795996 670 CpG island CpG island 3147
Tssr108836 11 69795895 to 69795922 27 - TSS region transcription start site region 108836
Tssr108837 11 69795930 to 69795947 17 - TSS region transcription start site region 108837
Fgf11 11 69796068 to 69801857 5789 - protein coding gene fibroblast growth factor 11
Tssr108838 11 69797159 to 69797179 20 - TSS region transcription start site region 108838
Tssr108839 11 69797361 to 69797383 22 - TSS region transcription start site region 108839
Tssr108840 11 69799937 to 69799966 29 - TSS region transcription start site region 108840
Cpgi3148 11 69800144 to 69801847 1703 CpG island CpG island 3148
Tssr102534 11 69800774 to 69800795 21 + TSS region transcription start site region 102534
6720407P12Rik 11 69802135 to 69802934 799 unclassified gene RIKEN cDNA 6720407P12 gene
Cpgi3149 11 69802598 to 69803199 601 CpG island CpG island 3149
Tssr108841 11 69802890 to 69802941 51 - TSS region transcription start site region 108841
Cpgi3150 11 69803534 to 69804484 950 CpG island CpG island 3150
Tmem102 11 69803603 to 69805624 2021 - protein coding gene transmembrane protein 102
G630025P09Rik 11 69803669 to 69806038 2369 + lncRNA gene RIKEN cDNA G630025P09 gene
Tssr108842 11 69805463 to 69805467 4 - TSS region transcription start site region 108842
Tssr108843 11 69805617 to 69805673 56 - TSS region transcription start site region 108843
Gm39566 11 69810965 to 69815298 4333 - protein coding gene predicted gene, 39566
Tssr108844 11 69813956 to 69813966 10 - TSS region transcription start site region 108844
Tssr108845 11 69815316 to 69815349 33 - TSS region transcription start site region 108845
Spem2 11 69816566 to 69818465 1899 - protein coding gene SPEM family member 2
Tssr108846 11 69816899 to 69816902 3 - TSS region transcription start site region 108846
Tssr108847 11 69817733 to 69817768 35 - TSS region transcription start site region 108847
Tssr108848 11 69817906 to 69817926 20 - TSS region transcription start site region 108848
Tssr108849 11 69818457 to 69818468 11 - TSS region transcription start site region 108849
Tssr108850 11 69818475 to 69818492 17 - TSS region transcription start site region 108850
Spem1 11 69820871 to 69822165 1294 - protein coding gene sperm maturation 1
Tssr108851 11 69822144 to 69822162 18 - TSS region transcription start site region 108851
Nlgn2 11 69823122 to 69837784 14662 - protein coding gene neuroligin 2
Cpgi3151 11 69833624 to 69834498 874 CpG island CpG island 3151
Tssr108852 11 69834665 to 69834675 10 - TSS region transcription start site region 108852
Cpgi3152 11 69836804 to 69838574 1770 CpG island CpG island 3152
Tssr108853 11 69837080 to 69837121 41 - TSS region transcription start site region 108853
Tssr108854 11 69837161 to 69837210 49 - TSS region transcription start site region 108854
Tssr108855 11 69837287 to 69837297 10 - TSS region transcription start site region 108855
Tssr108856 11 69837500 to 69837514 14 - TSS region transcription start site region 108856
Tssr108857 11 69837736 to 69837764 28 - TSS region transcription start site region 108857
Tssr108858 11 69837766 to 69837776 10 - TSS region transcription start site region 108858
Tssr108859 11 69837781 to 69837787 6 - TSS region transcription start site region 108859
Tssr108860 11 69838003 to 69838038 35 - TSS region transcription start site region 108860
Tmem256 11 69838525 to 69839558 1033 + protein coding gene transmembrane protein 256
Tssr102535 11 69838525 to 69838567 42 + TSS region transcription start site region 102535
Cpgi3153 11 69846149 to 69847290 1141 CpG island CpG island 3153
Tssr102536 11 69846374 to 69846387 13 + TSS region transcription start site region 102536
Plscr3 11 69846376 to 69852058 5682 + protein coding gene phospholipid scramblase 3
Tssr102537 11 69846610 to 69846659 49 + TSS region transcription start site region 102537
Tssr102538 11 69846665 to 69846681 16 + TSS region transcription start site region 102538
Tssr102539 11 69846850 to 69846947 97 + TSS region transcription start site region 102539
Tssr102540 11 69847333 to 69847380 47 + TSS region transcription start site region 102540
Tssr102541 11 69847467 to 69847489 22 + TSS region transcription start site region 102541
Tnk1 11 69851005 to 69858730 7725 - protein coding gene tyrosine kinase, non-receptor, 1
Cpgi3154 11 69855429 to 69855749 320 CpG island CpG island 3154
Tssr108861 11 69858687 to 69858713 26 - TSS region transcription start site region 108861
Tssr108862 11 69858723 to 69858737 14 - TSS region transcription start site region 108862
Gm32708 11 69858797 to 69868244 9447 + lncRNA gene predicted gene, 32708
Tmem95 11 69876684 to 69878018 1334 - protein coding gene transmembrane protein 95
Tssr102542 11 69877236 to 69877244 8 + TSS region transcription start site region 102542
Tssr108863 11 69878030 to 69878058 28 - TSS region transcription start site region 108863
Kctd11 11 69878264 to 69880985 2721 - protein coding gene potassium channel tetramerisation domain containing 11
Cpgi3155 11 69880557 to 69881724 1167 CpG island CpG island 3155
Tssr108864 11 69880856 to 69880863 7 - TSS region transcription start site region 108864
Tssr108865 11 69880866 to 69880937 71 - TSS region transcription start site region 108865
Tssr108866 11 69880941 to 69880963 22 - TSS region transcription start site region 108866
Tssr108867 11 69880971 to 69880985 14 - TSS region transcription start site region 108867
Acap1 11 69881567 to 69895539 13972 - protein coding gene ArfGAP with coiled-coil, ankyrin repeat and PH domains 1
Mir6924 11 69882032 to 69882094 62 - miRNA gene microRNA 6924
Tssr102543 11 69884281 to 69884290 9 + TSS region transcription start site region 102543
Tssr108868 11 69892111 to 69892115 4 - TSS region transcription start site region 108868
Tssr108869 11 69894787 to 69894812 25 - TSS region transcription start site region 108869
Tssr102544 11 69895029 to 69895034 5 + TSS region transcription start site region 102544
Tssr108870 11 69895465 to 69895474 9 - TSS region transcription start site region 108870
Tssr108871 11 69895498 to 69895520 22 - TSS region transcription start site region 108871
Tssr108872 11 69895523 to 69895560 37 - TSS region transcription start site region 108872
2810408A11Rik 11 69897352 to 69900987 3635 - protein coding gene RIKEN cDNA 2810408A11 gene