Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:69748669-69861038

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82 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lmrq4 11 12318637 to 69794121 57475484 QTL Leishmania major resistance QTL 4
Char8 11 35687789 to 69794161 34106372 QTL P. chabaudi malaria resistance QTL 8
Polr2a 11 69733997 to 69758633 24636 - protein coding gene polymerase (RNA) II (DNA directed) polypeptide A
Cpgi3144 11 69758046 to 69759362 1316 CpG island CpG island 3144
Tssr108828 11 69758177 to 69758201 24 - TSS region transcription start site region 108828
Tssr102527 11 69758288 to 69758296 8 + TSS region transcription start site region 102527
Tssr108829 11 69758361 to 69758392 31 - TSS region transcription start site region 108829
Tssr108830 11 69758630 to 69758642 12 - TSS region transcription start site region 108830
Tssr102528 11 69758856 to 69758869 13 + TSS region transcription start site region 102528
Slc35g3 11 69759884 to 69761844 1960 - protein coding gene solute carrier family 35, member G3
Tssr108831 11 69761682 to 69761710 28 - TSS region transcription start site region 108831
Tssr108832 11 69761889 to 69761899 10 - TSS region transcription start site region 108832
Tssr108833 11 69761909 to 69761927 18 - TSS region transcription start site region 108833
Tssr108834 11 69761936 to 69761952 16 - TSS region transcription start site region 108834
Tssr108835 11 69761963 to 69761972 9 - TSS region transcription start site region 108835
Cpgi3145 11 69765518 to 69766695 1177 CpG island CpG island 3145
Tssr102529 11 69765899 to 69765925 26 + TSS region transcription start site region 102529
Zbtb4 11 69765912 to 69784023 18111 + protein coding gene zinc finger and BTB domain containing 4
Tssr102530 11 69765970 to 69766027 57 + TSS region transcription start site region 102530
Tssr102531 11 69766495 to 69766559 64 + TSS region transcription start site region 102531
Tssr102532 11 69776082 to 69776110 28 + TSS region transcription start site region 102532
Tssr102533 11 69777599 to 69777612 13 + TSS region transcription start site region 102533
Cpgi3146 11 69778328 to 69778582 254 CpG island CpG island 3146
Chrnb1 11 69784036 to 69795943 11907 - protein coding gene cholinergic receptor, nicotinic, beta polypeptide 1 (muscle)
D11Nds16 11 69792326 to 69792489 163 DNA segment DNA segment, Chr 11, Nuffield Department of Surgery 16
D11Mit29 11 69793981 to 69794121 140 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 29
D11Mit30 11 69793984 to 69794161 177 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 30
Cpgi3147 11 69795326 to 69795996 670 CpG island CpG island 3147
Tssr108836 11 69795895 to 69795922 27 - TSS region transcription start site region 108836
Tssr108837 11 69795930 to 69795947 17 - TSS region transcription start site region 108837
Fgf11 11 69796068 to 69801857 5789 - protein coding gene fibroblast growth factor 11
Tssr108838 11 69797159 to 69797179 20 - TSS region transcription start site region 108838
Tssr108839 11 69797361 to 69797383 22 - TSS region transcription start site region 108839
Tssr108840 11 69799937 to 69799966 29 - TSS region transcription start site region 108840
Cpgi3148 11 69800144 to 69801847 1703 CpG island CpG island 3148
Tssr102534 11 69800774 to 69800795 21 + TSS region transcription start site region 102534
6720407P12Rik 11 69802135 to 69802934 799 unclassified gene RIKEN cDNA 6720407P12 gene
Cpgi3149 11 69802598 to 69803199 601 CpG island CpG island 3149
Tssr108841 11 69802890 to 69802941 51 - TSS region transcription start site region 108841
Cpgi3150 11 69803534 to 69804484 950 CpG island CpG island 3150
Tmem102 11 69803603 to 69805624 2021 - protein coding gene transmembrane protein 102
G630025P09Rik 11 69803669 to 69806038 2369 + lncRNA gene RIKEN cDNA G630025P09 gene
Tssr108842 11 69805463 to 69805467 4 - TSS region transcription start site region 108842
Tssr108843 11 69805617 to 69805673 56 - TSS region transcription start site region 108843
Gm39566 11 69810965 to 69815298 4333 - protein coding gene predicted gene, 39566
Tssr108844 11 69813956 to 69813966 10 - TSS region transcription start site region 108844
Tssr108845 11 69815316 to 69815349 33 - TSS region transcription start site region 108845
Spem2 11 69816566 to 69818465 1899 - protein coding gene SPEM family member 2
Tssr108846 11 69816899 to 69816902 3 - TSS region transcription start site region 108846
Tssr108847 11 69817733 to 69817768 35 - TSS region transcription start site region 108847
Tssr108848 11 69817906 to 69817926 20 - TSS region transcription start site region 108848
Tssr108849 11 69818457 to 69818468 11 - TSS region transcription start site region 108849
Tssr108850 11 69818475 to 69818492 17 - TSS region transcription start site region 108850
Spem1 11 69820871 to 69822165 1294 - protein coding gene sperm maturation 1
Tssr108851 11 69822144 to 69822162 18 - TSS region transcription start site region 108851
Nlgn2 11 69823122 to 69837784 14662 - protein coding gene neuroligin 2
Cpgi3151 11 69833624 to 69834498 874 CpG island CpG island 3151
Tssr108852 11 69834665 to 69834675 10 - TSS region transcription start site region 108852
Cpgi3152 11 69836804 to 69838574 1770 CpG island CpG island 3152
Tssr108853 11 69837080 to 69837121 41 - TSS region transcription start site region 108853
Tssr108854 11 69837161 to 69837210 49 - TSS region transcription start site region 108854
Tssr108855 11 69837287 to 69837297 10 - TSS region transcription start site region 108855
Tssr108856 11 69837500 to 69837514 14 - TSS region transcription start site region 108856
Tssr108857 11 69837736 to 69837764 28 - TSS region transcription start site region 108857
Tssr108858 11 69837766 to 69837776 10 - TSS region transcription start site region 108858
Tssr108859 11 69837781 to 69837787 6 - TSS region transcription start site region 108859
Tssr108860 11 69838003 to 69838038 35 - TSS region transcription start site region 108860
Tmem256 11 69838525 to 69839558 1033 + protein coding gene transmembrane protein 256
Tssr102535 11 69838525 to 69838567 42 + TSS region transcription start site region 102535
Cpgi3153 11 69846149 to 69847290 1141 CpG island CpG island 3153
Tssr102536 11 69846374 to 69846387 13 + TSS region transcription start site region 102536
Plscr3 11 69846376 to 69852058 5682 + protein coding gene phospholipid scramblase 3
Tssr102537 11 69846610 to 69846659 49 + TSS region transcription start site region 102537
Tssr102538 11 69846665 to 69846681 16 + TSS region transcription start site region 102538
Tssr102539 11 69846850 to 69846947 97 + TSS region transcription start site region 102539
Tssr102540 11 69847333 to 69847380 47 + TSS region transcription start site region 102540
Tssr102541 11 69847467 to 69847489 22 + TSS region transcription start site region 102541
Tnk1 11 69851005 to 69858730 7725 - protein coding gene tyrosine kinase, non-receptor, 1
Cpgi3154 11 69855429 to 69855749 320 CpG island CpG island 3154
Tssr108861 11 69858687 to 69858713 26 - TSS region transcription start site region 108861
Tssr108862 11 69858723 to 69858737 14 - TSS region transcription start site region 108862
Gm32708 11 69858797 to 69868244 9447 + lncRNA gene predicted gene, 32708