Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:69671909-69851927

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174 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lmrq4 11 12318637 to 69794121 57475484 QTL Leishmania major resistance QTL 4
Char8 11 35687789 to 69794161 34106372 QTL P. chabaudi malaria resistance QTL 8
Eif4a1 11 69666936 to 69672423 5487 - protein coding gene eukaryotic translation initiation factor 4A1
Cpgi3141 11 69670916 to 69672763 1847 CpG island CpG island 3141
Tssr108769 11 69672307 to 69672332 25 - TSS region transcription start site region 108769
Tssr108770 11 69672334 to 69672359 25 - TSS region transcription start site region 108770
Tssr108771 11 69672378 to 69672398 20 - TSS region transcription start site region 108771
Tssr108772 11 69672407 to 69672418 11 - TSS region transcription start site region 108772
Senp3 11 69673115 to 69682084 8969 - protein coding gene SUMO/sentrin specific peptidase 3
Tssr108773 11 69680641 to 69680665 24 - TSS region transcription start site region 108773
Cpgi3142 11 69681267 to 69682293 1026 CpG island CpG island 3142
Tssr108774 11 69681793 to 69681804 11 - TSS region transcription start site region 108774
Tssr108775 11 69681822 to 69681856 34 - TSS region transcription start site region 108775
Tssr108776 11 69681870 to 69681896 26 - TSS region transcription start site region 108776
Tssr108777 11 69681903 to 69681953 50 - TSS region transcription start site region 108777
Tssr108778 11 69681959 to 69681981 22 - TSS region transcription start site region 108778
Tssr108779 11 69681994 to 69682005 11 - TSS region transcription start site region 108779
Tssr108780 11 69682070 to 69682079 9 - TSS region transcription start site region 108780
Tnfsf13os 11 69682138 to 69691141 9003 + antisense lncRNA gene tumor necrosis factor (ligand) superfamily, member 13, opposite strand
Tnfsfm13 11 69682577 to 69696098 13521 - protein coding gene tumor necrosis factor (ligand) superfamily, membrane-bound member 13
Tnfsf13 11 69682846 to 69685784 2938 - protein coding gene tumor necrosis factor (ligand) superfamily, member 13
Tssr102519 11 69684323 to 69684335 12 + TSS region transcription start site region 102519
Tssr102520 11 69684355 to 69684384 29 + TSS region transcription start site region 102520
Tssr102521 11 69684396 to 69684411 15 + TSS region transcription start site region 102521
Tssr102522 11 69684489 to 69684507 18 + TSS region transcription start site region 102522
Tssr102523 11 69684551 to 69684562 11 + TSS region transcription start site region 102523
Tssr108781 11 69685275 to 69685335 60 - TSS region transcription start site region 108781
Tssr108782 11 69685337 to 69685348 11 - TSS region transcription start site region 108782
Tssr108783 11 69685520 to 69685536 16 - TSS region transcription start site region 108783
Tssr108784 11 69685537 to 69685565 28 - TSS region transcription start site region 108784
Tssr102524 11 69685937 to 69685950 13 + TSS region transcription start site region 102524
Tnfsf12 11 69686250 to 69695849 9599 - protein coding gene tumor necrosis factor (ligand) superfamily, member 12
Tssr102525 11 69686707 to 69686742 35 + TSS region transcription start site region 102525
Tssr108785 11 69686723 to 69686739 16 - TSS region transcription start site region 108785
Tssr108786 11 69686747 to 69686797 50 - TSS region transcription start site region 108786
Tssr108787 11 69686828 to 69686840 12 - TSS region transcription start site region 108787
Tssr108788 11 69686887 to 69686898 11 - TSS region transcription start site region 108788
Tssr108789 11 69686916 to 69686928 12 - TSS region transcription start site region 108789
Tssr108790 11 69686939 to 69686953 14 - TSS region transcription start site region 108790
Tssr108791 11 69687029 to 69687045 16 - TSS region transcription start site region 108791
Tssr108792 11 69687061 to 69687081 20 - TSS region transcription start site region 108792
Tssr108793 11 69687286 to 69687300 14 - TSS region transcription start site region 108793
Tssr108794 11 69687309 to 69687327 18 - TSS region transcription start site region 108794
Tssr102526 11 69692649 to 69692662 13 + TSS region transcription start site region 102526
Tssr108795 11 69693537 to 69693552 15 - TSS region transcription start site region 108795
Tssr108796 11 69693651 to 69693667 16 - TSS region transcription start site region 108796
Cpgi3143 11 69695603 to 69696084 481 CpG island CpG island 3143
Tssr108797 11 69695639 to 69695713 74 - TSS region transcription start site region 108797
Tssr108798 11 69695753 to 69695785 32 - TSS region transcription start site region 108798
Tssr108799 11 69695802 to 69695872 70 - TSS region transcription start site region 108799
Tssr108800 11 69695881 to 69695900 19 - TSS region transcription start site region 108800
Tssr108801 11 69695948 to 69695959 11 - TSS region transcription start site region 108801
Tssr108802 11 69695988 to 69696011 23 - TSS region transcription start site region 108802
Tssr108803 11 69696037 to 69696055 18 - TSS region transcription start site region 108803
Tssr108804 11 69696058 to 69696102 44 - TSS region transcription start site region 108804
Gm12307 11 69729995 to 69730584 589 - pseudogene predicted gene 12307
D11Mit60 11 69733658 to 69733962 304 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 60
Polr2a 11 69733997 to 69758633 24636 - protein coding gene polymerase (RNA) II (DNA directed) polypeptide A
Tssr3545 11 69734609 to 69734654 45 - TSS region transcription start site region 3545
Tssr3546 11 69734658 to 69734665 7 - TSS region transcription start site region 3546
Tssr3547 11 69734679 to 69734695 16 - TSS region transcription start site region 3547
Tssr3548 11 69734703 to 69734717 14 - TSS region transcription start site region 3548
Tssr3549 11 69734720 to 69734727 7 - TSS region transcription start site region 3549
Tssr108805 11 69734728 to 69734729 1 - TSS region transcription start site region 108805
Tssr3550 11 69734730 to 69734742 12 - TSS region transcription start site region 3550
Tssr108806 11 69734760 to 69734768 8 - TSS region transcription start site region 108806
Tssr108807 11 69734771 to 69734776 5 - TSS region transcription start site region 108807
Tssr108808 11 69734790 to 69734793 3 - TSS region transcription start site region 108808
Tssr3551 11 69734798 to 69734826 28 - TSS region transcription start site region 3551
Tssr3552 11 69734831 to 69734835 4 - TSS region transcription start site region 3552
Tssr108809 11 69734851 to 69734860 9 - TSS region transcription start site region 108809
Tssr108810 11 69734892 to 69734903 11 - TSS region transcription start site region 108810
Tssr108811 11 69734908 to 69734919 11 - TSS region transcription start site region 108811
Tssr108812 11 69734923 to 69734943 20 - TSS region transcription start site region 108812
Tssr108813 11 69734947 to 69734959 12 - TSS region transcription start site region 108813
Tssr3553 11 69734965 to 69734973 8 - TSS region transcription start site region 3553
Tssr108814 11 69734975 to 69734987 12 - TSS region transcription start site region 108814
Tssr108815 11 69735018 to 69735023 5 - TSS region transcription start site region 108815
Tssr108816 11 69735034 to 69735039 5 - TSS region transcription start site region 108816
Tssr108817 11 69735044 to 69735053 9 - TSS region transcription start site region 108817
Tssr108818 11 69735080 to 69735092 12 - TSS region transcription start site region 108818
Tssr3554 11 69735113 to 69735151 38 - TSS region transcription start site region 3554
Tssr108819 11 69735177 to 69735191 14 - TSS region transcription start site region 108819
Tssr3555 11 69735219 to 69735226 7 - TSS region transcription start site region 3555
Tssr108820 11 69735232 to 69735244 12 - TSS region transcription start site region 108820
Tssr3556 11 69735249 to 69735262 13 - TSS region transcription start site region 3556
Tssr3557 11 69735273 to 69735276 3 - TSS region transcription start site region 3557
Tssr108821 11 69735284 to 69735295 11 - TSS region transcription start site region 108821
Tssr108822 11 69735313 to 69735322 9 - TSS region transcription start site region 108822
Tssr108823 11 69735326 to 69735337 11 - TSS region transcription start site region 108823
Tssr3558 11 69735341 to 69735355 14 - TSS region transcription start site region 3558
Tssr108824 11 69735356 to 69735367 11 - TSS region transcription start site region 108824
Tssr108825 11 69735375 to 69735386 11 - TSS region transcription start site region 108825
Tssr108826 11 69735388 to 69735399 11 - TSS region transcription start site region 108826
Tssr3559 11 69735406 to 69735412 6 - TSS region transcription start site region 3559
Tssr3560 11 69735414 to 69735432 18 - TSS region transcription start site region 3560
Tssr3561 11 69735434 to 69735443 9 - TSS region transcription start site region 3561
Tssr108827 11 69735468 to 69735510 42 - TSS region transcription start site region 108827
Tssr3562 11 69735557 to 69735572 15 - TSS region transcription start site region 3562
Cpgi3144 11 69758046 to 69759362 1316 CpG island CpG island 3144
Tssr108828 11 69758177 to 69758201 24 - TSS region transcription start site region 108828
Tssr102527 11 69758288 to 69758296 8 + TSS region transcription start site region 102527
Tssr108829 11 69758361 to 69758392 31 - TSS region transcription start site region 108829
Tssr108830 11 69758630 to 69758642 12 - TSS region transcription start site region 108830
Tssr102528 11 69758856 to 69758869 13 + TSS region transcription start site region 102528
Slc35g3 11 69759884 to 69761844 1960 - protein coding gene solute carrier family 35, member G3
Tssr108831 11 69761682 to 69761710 28 - TSS region transcription start site region 108831
Tssr108832 11 69761889 to 69761899 10 - TSS region transcription start site region 108832
Tssr108833 11 69761909 to 69761927 18 - TSS region transcription start site region 108833
Tssr108834 11 69761936 to 69761952 16 - TSS region transcription start site region 108834
Tssr108835 11 69761963 to 69761972 9 - TSS region transcription start site region 108835
Cpgi3145 11 69765518 to 69766695 1177 CpG island CpG island 3145
Tssr102529 11 69765899 to 69765925 26 + TSS region transcription start site region 102529
Zbtb4 11 69765912 to 69784023 18111 + protein coding gene zinc finger and BTB domain containing 4
Tssr102530 11 69765970 to 69766027 57 + TSS region transcription start site region 102530
Tssr102531 11 69766495 to 69766559 64 + TSS region transcription start site region 102531
Tssr102532 11 69776082 to 69776110 28 + TSS region transcription start site region 102532
Tssr102533 11 69777599 to 69777612 13 + TSS region transcription start site region 102533
Cpgi3146 11 69778328 to 69778582 254 CpG island CpG island 3146
Chrnb1 11 69784036 to 69795943 11907 - protein coding gene cholinergic receptor, nicotinic, beta polypeptide 1 (muscle)
D11Nds16 11 69792326 to 69792489 163 DNA segment DNA segment, Chr 11, Nuffield Department of Surgery 16
D11Mit29 11 69793981 to 69794121 140 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 29
D11Mit30 11 69793984 to 69794161 177 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 30
Cpgi3147 11 69795326 to 69795996 670 CpG island CpG island 3147
Tssr108836 11 69795895 to 69795922 27 - TSS region transcription start site region 108836
Tssr108837 11 69795930 to 69795947 17 - TSS region transcription start site region 108837
Fgf11 11 69796068 to 69801857 5789 - protein coding gene fibroblast growth factor 11
Tssr108838 11 69797159 to 69797179 20 - TSS region transcription start site region 108838
Tssr108839 11 69797361 to 69797383 22 - TSS region transcription start site region 108839
Tssr108840 11 69799937 to 69799966 29 - TSS region transcription start site region 108840
Cpgi3148 11 69800144 to 69801847 1703 CpG island CpG island 3148
Tssr102534 11 69800774 to 69800795 21 + TSS region transcription start site region 102534
6720407P12Rik 11 69802135 to 69802934 799 unclassified gene RIKEN cDNA 6720407P12 gene
Cpgi3149 11 69802598 to 69803199 601 CpG island CpG island 3149
Tssr108841 11 69802890 to 69802941 51 - TSS region transcription start site region 108841
Cpgi3150 11 69803534 to 69804484 950 CpG island CpG island 3150
Tmem102 11 69803603 to 69805624 2021 - protein coding gene transmembrane protein 102
G630025P09Rik 11 69803669 to 69806038 2369 + lncRNA gene RIKEN cDNA G630025P09 gene
Tssr108842 11 69805463 to 69805467 4 - TSS region transcription start site region 108842
Tssr108843 11 69805617 to 69805673 56 - TSS region transcription start site region 108843
Gm39566 11 69810965 to 69815298 4333 - protein coding gene predicted gene, 39566
Tssr108844 11 69813956 to 69813966 10 - TSS region transcription start site region 108844
Tssr108845 11 69815316 to 69815349 33 - TSS region transcription start site region 108845
Spem2 11 69816566 to 69818465 1899 - protein coding gene SPEM family member 2
Tssr108846 11 69816899 to 69816902 3 - TSS region transcription start site region 108846
Tssr108847 11 69817733 to 69817768 35 - TSS region transcription start site region 108847
Tssr108848 11 69817906 to 69817926 20 - TSS region transcription start site region 108848
Tssr108849 11 69818457 to 69818468 11 - TSS region transcription start site region 108849
Tssr108850 11 69818475 to 69818492 17 - TSS region transcription start site region 108850
Spem1 11 69820871 to 69822165 1294 - protein coding gene sperm maturation 1
Tssr108851 11 69822144 to 69822162 18 - TSS region transcription start site region 108851
Nlgn2 11 69823122 to 69837784 14662 - protein coding gene neuroligin 2
Cpgi3151 11 69833624 to 69834498 874 CpG island CpG island 3151
Tssr108852 11 69834665 to 69834675 10 - TSS region transcription start site region 108852
Cpgi3152 11 69836804 to 69838574 1770 CpG island CpG island 3152
Tssr108853 11 69837080 to 69837121 41 - TSS region transcription start site region 108853
Tssr108854 11 69837161 to 69837210 49 - TSS region transcription start site region 108854
Tssr108855 11 69837287 to 69837297 10 - TSS region transcription start site region 108855
Tssr108856 11 69837500 to 69837514 14 - TSS region transcription start site region 108856
Tssr108857 11 69837736 to 69837764 28 - TSS region transcription start site region 108857
Tssr108858 11 69837766 to 69837776 10 - TSS region transcription start site region 108858
Tssr108859 11 69837781 to 69837787 6 - TSS region transcription start site region 108859
Tssr108860 11 69838003 to 69838038 35 - TSS region transcription start site region 108860
Tssr102535 11 69838525 to 69838567 42 + TSS region transcription start site region 102535
Tmem256 11 69838525 to 69839558 1033 + protein coding gene transmembrane protein 256
Cpgi3153 11 69846149 to 69847290 1141 CpG island CpG island 3153
Tssr102536 11 69846374 to 69846387 13 + TSS region transcription start site region 102536
Plscr3 11 69846376 to 69852058 5682 + protein coding gene phospholipid scramblase 3
Tssr102537 11 69846610 to 69846659 49 + TSS region transcription start site region 102537
Tssr102538 11 69846665 to 69846681 16 + TSS region transcription start site region 102538
Tssr102539 11 69846850 to 69846947 97 + TSS region transcription start site region 102539
Tssr102540 11 69847333 to 69847380 47 + TSS region transcription start site region 102540
Tssr102541 11 69847467 to 69847489 22 + TSS region transcription start site region 102541
Tnk1 11 69851005 to 69858730 7725 - protein coding gene tyrosine kinase, non-receptor, 1