Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:69557743-69647783

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89 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sluc36 11 59365791 to 69591873 10226082 QTL susceptibility to lung cancer 36
Efnb3 11 69554092 to 69560205 6113 - protein coding gene ephrin B3
Cpgi3133 11 69559781 to 69560596 815 CpG island CpG island 3133
Tssr108702 11 69560170 to 69560185 15 - TSS region transcription start site region 108702
Tssr108703 11 69560186 to 69560213 27 - TSS region transcription start site region 108703
Tssr108704 11 69560224 to 69560235 11 - TSS region transcription start site region 108704
Wrap53 11 69561758 to 69580255 18497 - protein coding gene WD repeat containing, antisense to Trp53
Tssr102475 11 69573819 to 69573833 14 + TSS region transcription start site region 102475
Rps27-ps2 11 69573827 to 69574168 341 + pseudogene ribosomal protein S27, pseudogene 2
Cpgi3134 11 69578604 to 69579472 868 CpG island CpG island 3134
Tssr108705 11 69579124 to 69579140 16 - TSS region transcription start site region 108705
Tssr108706 11 69579212 to 69579289 77 - TSS region transcription start site region 108706
Tssr108707 11 69579320 to 69579352 32 - TSS region transcription start site region 108707
Tssr108708 11 69579367 to 69579398 31 - TSS region transcription start site region 108708
Tssr108709 11 69580230 to 69580256 26 - TSS region transcription start site region 108709
Tssr102476 11 69580282 to 69580303 21 + TSS region transcription start site region 102476
Cpgi3135 11 69580305 to 69580881 576 CpG island CpG island 3135
Trp53 11 69580359 to 69591873 11514 + protein coding gene transformation related protein 53
Tssr102477 11 69580366 to 69580382 16 + TSS region transcription start site region 102477
Tssr102478 11 69580385 to 69580388 3 + TSS region transcription start site region 102478
Tssr102479 11 69580392 to 69580419 27 + TSS region transcription start site region 102479
Cpgi3136 11 69581112 to 69581703 591 CpG island CpG island 3136
Tssr108710 11 69581193 to 69581212 19 - TSS region transcription start site region 108710
Tssr102480 11 69586020 to 69586052 32 + TSS region transcription start site region 102480
Tssr102481 11 69587494 to 69587533 39 + TSS region transcription start site region 102481
D11Mit107.1 11 69587647 to 69587756 109 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 107.1
D11Mit107 11 69587697 to 69587984 287 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 107
D11Mit107.2 11 69587812 to 69587961 149 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 107.2
Tssr102482 11 69589663 to 69589683 20 + TSS region transcription start site region 102482
Tssr102483 11 69590660 to 69590668 8 + TSS region transcription start site region 102483
Tssr102484 11 69591413 to 69591423 10 + TSS region transcription start site region 102484
Tssr102485 11 69591440 to 69591474 34 + TSS region transcription start site region 102485
Tssr102486 11 69591490 to 69591508 18 + TSS region transcription start site region 102486
Tssr108711 11 69592084 to 69592091 7 - TSS region transcription start site region 108711
Atp1b2 11 69599736 to 69605942 6206 - protein coding gene ATPase, Na+/K+ transporting, beta 2 polypeptide
Tssr108712 11 69600007 to 69600018 11 - TSS region transcription start site region 108712
Tssr102487 11 69600013 to 69600040 27 + TSS region transcription start site region 102487
Tssr108713 11 69600152 to 69600169 17 - TSS region transcription start site region 108713
Tssr108714 11 69600234 to 69600237 3 - TSS region transcription start site region 108714
Tssr108715 11 69600247 to 69600271 24 - TSS region transcription start site region 108715
Tssr108716 11 69600559 to 69600575 16 - TSS region transcription start site region 108716
Tssr108717 11 69600584 to 69600589 5 - TSS region transcription start site region 108717
Tssr108718 11 69600643 to 69600653 10 - TSS region transcription start site region 108718
Tssr108719 11 69600654 to 69600655 1 - TSS region transcription start site region 108719
Tssr108720 11 69600658 to 69600671 13 - TSS region transcription start site region 108720
Tssr108721 11 69600672 to 69600680 8 - TSS region transcription start site region 108721
Tssr3544 11 69600695 to 69600704 9 - TSS region transcription start site region 3544
Tssr108722 11 69600753 to 69600758 5 - TSS region transcription start site region 108722
Tssr108723 11 69600781 to 69600795 14 - TSS region transcription start site region 108723
Tssr108724 11 69600834 to 69600841 7 - TSS region transcription start site region 108724
Tssr108725 11 69600858 to 69600863 5 - TSS region transcription start site region 108725
Tssr108726 11 69600953 to 69600965 12 - TSS region transcription start site region 108726
Tssr108727 11 69600975 to 69600986 11 - TSS region transcription start site region 108727
Tssr108728 11 69601019 to 69601030 11 - TSS region transcription start site region 108728
Tssr108729 11 69601106 to 69601115 9 - TSS region transcription start site region 108729
Tssr108730 11 69601138 to 69601147 9 - TSS region transcription start site region 108730
Tssr102488 11 69601163 to 69601203 40 + TSS region transcription start site region 102488
Tssr108731 11 69601169 to 69601189 20 - TSS region transcription start site region 108731
Tssr108732 11 69601230 to 69601250 20 - TSS region transcription start site region 108732
Tssr102489 11 69601238 to 69601249 11 + TSS region transcription start site region 102489
Tssr108733 11 69602452 to 69602465 13 - TSS region transcription start site region 108733
Tssr108734 11 69602743 to 69602783 40 - TSS region transcription start site region 108734
Tssr108735 11 69602810 to 69602832 22 - TSS region transcription start site region 108735
Tssr108736 11 69602848 to 69602860 12 - TSS region transcription start site region 108736
Tssr108737 11 69603538 to 69603562 24 - TSS region transcription start site region 108737
Ppiq9a 11 69603559 to 69603559 0 QTL prepulse inhibition QTL 9a
Cpgi3137 11 69604691 to 69606028 1337 CpG island CpG island 3137
Tssr108738 11 69605953 to 69605971 18 - TSS region transcription start site region 108738
Shbg 11 69614804 to 69617905 3101 - protein coding gene sex hormone binding globulin
Tssr108739 11 69616974 to 69616985 11 - TSS region transcription start site region 108739
Tssr108740 11 69617589 to 69617594 5 - TSS region transcription start site region 108740
Tssr108741 11 69617722 to 69617739 17 - TSS region transcription start site region 108741
Tssr108742 11 69617861 to 69617873 12 - TSS region transcription start site region 108742
Tssr108743 11 69617879 to 69617926 47 - TSS region transcription start site region 108743
Tssr108744 11 69618069 to 69618085 16 - TSS region transcription start site region 108744
Sat2 11 69622024 to 69623870 1846 + protein coding gene spermidine/spermine N1-acetyl transferase 2
Tssr102490 11 69622044 to 69622101 57 + TSS region transcription start site region 102490
Gm12308 11 69630924 to 69631312 388 - pseudogene predicted gene 12308
Tssr108745 11 69631333 to 69631343 10 - TSS region transcription start site region 108745
Gm12309 11 69631522 to 69631703 181 - pseudogene predicted gene 12309
Cpgi3138 11 69632468 to 69633829 1361 CpG island CpG island 3138
Tssr102491 11 69632927 to 69633002 75 + TSS region transcription start site region 102491
Fxr2 11 69632990 to 69653297 20307 + protein coding gene fragile X mental retardation, autosomal homolog 2
Tssr102492 11 69633042 to 69633053 11 + TSS region transcription start site region 102492
Tssr102493 11 69633256 to 69633284 28 + TSS region transcription start site region 102493
Tssr102494 11 69633745 to 69633750 5 + TSS region transcription start site region 102494
Mir467f 11 69635400 to 69635519 119 - miRNA gene microRNA 467f
Tssr102495 11 69642786 to 69642788 2 + TSS region transcription start site region 102495
Tssr102496 11 69645169 to 69645178 9 + TSS region transcription start site region 102496