Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:69496413-69686423

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184 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sluc36 11 59365791 to 69591873 10226082 QTL susceptibility to lung cancer 36
Dnah2 11 69420807 to 69549108 128301 - protein coding gene dynein, axonemal, heavy chain 2
Gm27493 11 69505358 to 69505435 77 - miRNA gene predicted gene, 27493
Tssr108696 11 69523224 to 69523228 4 - TSS region transcription start site region 108696
D11Mit298.5 11 69526353 to 69526478 125 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 298.5
D11Mit298 11 69526464 to 69526662 198 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 298
Cpgi3132 11 69546417 to 69546921 504 CpG island CpG island 3132
Tssr108697 11 69546484 to 69546528 44 - TSS region transcription start site region 108697
Efnb3 11 69554092 to 69560205 6113 - protein coding gene ephrin B3
Tssr108698 11 69554771 to 69554811 40 - TSS region transcription start site region 108698
Tssr108699 11 69555566 to 69555613 47 - TSS region transcription start site region 108699
Tssr108700 11 69555778 to 69555789 11 - TSS region transcription start site region 108700
Tssr108701 11 69555973 to 69556009 36 - TSS region transcription start site region 108701
Cpgi3133 11 69559781 to 69560596 815 CpG island CpG island 3133
Tssr108702 11 69560170 to 69560185 15 - TSS region transcription start site region 108702
Tssr108703 11 69560186 to 69560213 27 - TSS region transcription start site region 108703
Tssr108704 11 69560224 to 69560235 11 - TSS region transcription start site region 108704
Wrap53 11 69561758 to 69580255 18497 - protein coding gene WD repeat containing, antisense to Trp53
Tssr102475 11 69573819 to 69573833 14 + TSS region transcription start site region 102475
Rps27-ps2 11 69573827 to 69574168 341 + pseudogene ribosomal protein S27, pseudogene 2
Cpgi3134 11 69578604 to 69579472 868 CpG island CpG island 3134
Tssr108705 11 69579124 to 69579140 16 - TSS region transcription start site region 108705
Tssr108706 11 69579212 to 69579289 77 - TSS region transcription start site region 108706
Tssr108707 11 69579320 to 69579352 32 - TSS region transcription start site region 108707
Tssr108708 11 69579367 to 69579398 31 - TSS region transcription start site region 108708
Tssr108709 11 69580230 to 69580256 26 - TSS region transcription start site region 108709
Tssr102476 11 69580282 to 69580303 21 + TSS region transcription start site region 102476
Cpgi3135 11 69580305 to 69580881 576 CpG island CpG island 3135
Trp53 11 69580359 to 69591873 11514 + protein coding gene transformation related protein 53
Tssr102477 11 69580366 to 69580382 16 + TSS region transcription start site region 102477
Tssr102478 11 69580385 to 69580388 3 + TSS region transcription start site region 102478
Tssr102479 11 69580392 to 69580419 27 + TSS region transcription start site region 102479
Cpgi3136 11 69581112 to 69581703 591 CpG island CpG island 3136
Tssr108710 11 69581193 to 69581212 19 - TSS region transcription start site region 108710
Tssr102480 11 69586020 to 69586052 32 + TSS region transcription start site region 102480
Tssr102481 11 69587494 to 69587533 39 + TSS region transcription start site region 102481
D11Mit107.1 11 69587647 to 69587756 109 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 107.1
D11Mit107 11 69587697 to 69587984 287 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 107
D11Mit107.2 11 69587812 to 69587961 149 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 107.2
Tssr102482 11 69589663 to 69589683 20 + TSS region transcription start site region 102482
Tssr102483 11 69590660 to 69590668 8 + TSS region transcription start site region 102483
Tssr102484 11 69591413 to 69591423 10 + TSS region transcription start site region 102484
Tssr102485 11 69591440 to 69591474 34 + TSS region transcription start site region 102485
Tssr102486 11 69591490 to 69591508 18 + TSS region transcription start site region 102486
Tssr108711 11 69592084 to 69592091 7 - TSS region transcription start site region 108711
Atp1b2 11 69599736 to 69605942 6206 - protein coding gene ATPase, Na+/K+ transporting, beta 2 polypeptide
Tssr108712 11 69600007 to 69600018 11 - TSS region transcription start site region 108712
Tssr102487 11 69600013 to 69600040 27 + TSS region transcription start site region 102487
Tssr108713 11 69600152 to 69600169 17 - TSS region transcription start site region 108713
Tssr108714 11 69600234 to 69600237 3 - TSS region transcription start site region 108714
Tssr108715 11 69600247 to 69600271 24 - TSS region transcription start site region 108715
Tssr108716 11 69600559 to 69600575 16 - TSS region transcription start site region 108716
Tssr108717 11 69600584 to 69600589 5 - TSS region transcription start site region 108717
Tssr108718 11 69600643 to 69600653 10 - TSS region transcription start site region 108718
Tssr108719 11 69600654 to 69600655 1 - TSS region transcription start site region 108719
Tssr108720 11 69600658 to 69600671 13 - TSS region transcription start site region 108720
Tssr108721 11 69600672 to 69600680 8 - TSS region transcription start site region 108721
Tssr3544 11 69600695 to 69600704 9 - TSS region transcription start site region 3544
Tssr108722 11 69600753 to 69600758 5 - TSS region transcription start site region 108722
Tssr108723 11 69600781 to 69600795 14 - TSS region transcription start site region 108723
Tssr108724 11 69600834 to 69600841 7 - TSS region transcription start site region 108724
Tssr108725 11 69600858 to 69600863 5 - TSS region transcription start site region 108725
Tssr108726 11 69600953 to 69600965 12 - TSS region transcription start site region 108726
Tssr108727 11 69600975 to 69600986 11 - TSS region transcription start site region 108727
Tssr108728 11 69601019 to 69601030 11 - TSS region transcription start site region 108728
Tssr108729 11 69601106 to 69601115 9 - TSS region transcription start site region 108729
Tssr108730 11 69601138 to 69601147 9 - TSS region transcription start site region 108730
Tssr102488 11 69601163 to 69601203 40 + TSS region transcription start site region 102488
Tssr108731 11 69601169 to 69601189 20 - TSS region transcription start site region 108731
Tssr108732 11 69601230 to 69601250 20 - TSS region transcription start site region 108732
Tssr102489 11 69601238 to 69601249 11 + TSS region transcription start site region 102489
Tssr108733 11 69602452 to 69602465 13 - TSS region transcription start site region 108733
Tssr108734 11 69602743 to 69602783 40 - TSS region transcription start site region 108734
Tssr108735 11 69602810 to 69602832 22 - TSS region transcription start site region 108735
Tssr108736 11 69602848 to 69602860 12 - TSS region transcription start site region 108736
Tssr108737 11 69603538 to 69603562 24 - TSS region transcription start site region 108737
Ppiq9a 11 69603559 to 69603559 0 QTL prepulse inhibition QTL 9a
Cpgi3137 11 69604691 to 69606028 1337 CpG island CpG island 3137
Tssr108738 11 69605953 to 69605971 18 - TSS region transcription start site region 108738
Shbg 11 69614804 to 69617905 3101 - protein coding gene sex hormone binding globulin
Tssr108739 11 69616974 to 69616985 11 - TSS region transcription start site region 108739
Tssr108740 11 69617589 to 69617594 5 - TSS region transcription start site region 108740
Tssr108741 11 69617722 to 69617739 17 - TSS region transcription start site region 108741
Tssr108742 11 69617861 to 69617873 12 - TSS region transcription start site region 108742
Tssr108743 11 69617879 to 69617926 47 - TSS region transcription start site region 108743
Tssr108744 11 69618069 to 69618085 16 - TSS region transcription start site region 108744
Sat2 11 69622024 to 69623870 1846 + protein coding gene spermidine/spermine N1-acetyl transferase 2
Tssr102490 11 69622044 to 69622101 57 + TSS region transcription start site region 102490
Gm12308 11 69630924 to 69631312 388 - pseudogene predicted gene 12308
Tssr108745 11 69631333 to 69631343 10 - TSS region transcription start site region 108745
Gm12309 11 69631522 to 69631703 181 - pseudogene predicted gene 12309
Cpgi3138 11 69632468 to 69633829 1361 CpG island CpG island 3138
Tssr102491 11 69632927 to 69633002 75 + TSS region transcription start site region 102491
Fxr2 11 69632990 to 69653297 20307 + protein coding gene fragile X mental retardation, autosomal homolog 2
Tssr102492 11 69633042 to 69633053 11 + TSS region transcription start site region 102492
Tssr102493 11 69633256 to 69633284 28 + TSS region transcription start site region 102493
Tssr102494 11 69633745 to 69633750 5 + TSS region transcription start site region 102494
Mir467f 11 69635400 to 69635519 119 - miRNA gene microRNA 467f
Tssr102495 11 69642786 to 69642788 2 + TSS region transcription start site region 102495
Tssr102496 11 69645169 to 69645178 9 + TSS region transcription start site region 102496
Tssr102497 11 69654999 to 69655013 14 + TSS region transcription start site region 102497
Tssr102498 11 69655029 to 69655055 26 + TSS region transcription start site region 102498
Sox15 11 69655314 to 69656727 1413 + protein coding gene SRY (sex determining region Y)-box 15
Cpgi3139 11 69655380 to 69655921 541 CpG island CpG island 3139
Tssr102499 11 69655559 to 69655567 8 + TSS region transcription start site region 102499
Tssr102500 11 69655584 to 69655608 24 + TSS region transcription start site region 102500
Tssr102501 11 69655617 to 69655630 13 + TSS region transcription start site region 102501
Tssr102502 11 69655711 to 69655733 22 + TSS region transcription start site region 102502
Tssr102503 11 69655808 to 69655819 11 + TSS region transcription start site region 102503
Tssr102504 11 69655840 to 69655857 17 + TSS region transcription start site region 102504
Tssr102505 11 69656522 to 69656532 10 + TSS region transcription start site region 102505
Mpdu1 11 69656697 to 69662642 5945 - protein coding gene mannose-P-dolichol utilization defect 1
Cpgi3140 11 69662187 to 69662943 756 CpG island CpG island 3140
Tssr102506 11 69662353 to 69662380 27 + TSS region transcription start site region 102506
Tssr108746 11 69662569 to 69662596 27 - TSS region transcription start site region 108746
Tssr108747 11 69662625 to 69662636 11 - TSS region transcription start site region 108747
Tssr102507 11 69662638 to 69662646 8 + TSS region transcription start site region 102507
Mir1934 11 69663043 to 69663125 82 + miRNA gene microRNA 1934
Tssr102508 11 69664170 to 69664184 14 + TSS region transcription start site region 102508
Tssr102509 11 69664212 to 69664219 7 + TSS region transcription start site region 102509
Cd68 11 69664213 to 69666153 1940 - protein coding gene CD68 antigen
Tssr102510 11 69664325 to 69664353 28 + TSS region transcription start site region 102510
Tssr108748 11 69664366 to 69664382 16 - TSS region transcription start site region 108748
Tssr102511 11 69664367 to 69664388 21 + TSS region transcription start site region 102511
Tssr108749 11 69664387 to 69664459 72 - TSS region transcription start site region 108749
Tssr108750 11 69664467 to 69664488 21 - TSS region transcription start site region 108750
Tssr108751 11 69664500 to 69664517 17 - TSS region transcription start site region 108751
Tssr108752 11 69664778 to 69664930 152 - TSS region transcription start site region 108752
Tssr108753 11 69665058 to 69665120 62 - TSS region transcription start site region 108753
Tssr108754 11 69665297 to 69665320 23 - TSS region transcription start site region 108754
Tssr108755 11 69665357 to 69665365 8 - TSS region transcription start site region 108755
Tssr108756 11 69665384 to 69665395 11 - TSS region transcription start site region 108756
Tssr108757 11 69665575 to 69665586 11 - TSS region transcription start site region 108757
Tssr102512 11 69665601 to 69665636 35 + TSS region transcription start site region 102512
Tssr102513 11 69665637 to 69665674 37 + TSS region transcription start site region 102513
Tssr102514 11 69665682 to 69665704 22 + TSS region transcription start site region 102514
Tssr102515 11 69665711 to 69665842 131 + TSS region transcription start site region 102515
Tssr108758 11 69665818 to 69665825 7 - TSS region transcription start site region 108758
Tssr108759 11 69665836 to 69665843 7 - TSS region transcription start site region 108759
Tssr108760 11 69665892 to 69665905 13 - TSS region transcription start site region 108760
Tssr108761 11 69666065 to 69666076 11 - TSS region transcription start site region 108761
Tssr108762 11 69666078 to 69666149 71 - TSS region transcription start site region 108762
Tssr108763 11 69666162 to 69666169 7 - TSS region transcription start site region 108763
Tssr102516 11 69666472 to 69666493 21 + TSS region transcription start site region 102516
Tssr102517 11 69666502 to 69666515 13 + TSS region transcription start site region 102517
Eif4a1 11 69666936 to 69672423 5487 - protein coding gene eukaryotic translation initiation factor 4A1
Tssr108764 11 69667225 to 69667255 30 - TSS region transcription start site region 108764
Tssr108765 11 69667370 to 69667386 16 - TSS region transcription start site region 108765
Gm24029 11 69667834 to 69667976 142 - snoRNA gene predicted gene, 24029
Gm25835 11 69668852 to 69668995 143 - snoRNA gene predicted gene, 25835
Tssr108766 11 69668991 to 69668996 5 - TSS region transcription start site region 108766
Gm22988 11 69669635 to 69669778 143 - snoRNA gene predicted gene, 22988
Cpgi3141 11 69670916 to 69672763 1847 CpG island CpG island 3141
Tssr108767 11 69671214 to 69671238 24 - TSS region transcription start site region 108767
Tssr108768 11 69671244 to 69671284 40 - TSS region transcription start site region 108768
Tssr102518 11 69671366 to 69671400 34 + TSS region transcription start site region 102518
Tssr108769 11 69672307 to 69672332 25 - TSS region transcription start site region 108769
Tssr108770 11 69672334 to 69672359 25 - TSS region transcription start site region 108770
Tssr108771 11 69672378 to 69672398 20 - TSS region transcription start site region 108771
Tssr108772 11 69672407 to 69672418 11 - TSS region transcription start site region 108772
Senp3 11 69673115 to 69682084 8969 - protein coding gene SUMO/sentrin specific peptidase 3
Tssr108773 11 69680641 to 69680665 24 - TSS region transcription start site region 108773
Cpgi3142 11 69681267 to 69682293 1026 CpG island CpG island 3142
Tssr108774 11 69681793 to 69681804 11 - TSS region transcription start site region 108774
Tssr108775 11 69681822 to 69681856 34 - TSS region transcription start site region 108775
Tssr108776 11 69681870 to 69681896 26 - TSS region transcription start site region 108776
Tssr108777 11 69681903 to 69681953 50 - TSS region transcription start site region 108777
Tssr108778 11 69681959 to 69681981 22 - TSS region transcription start site region 108778
Tssr108779 11 69681994 to 69682005 11 - TSS region transcription start site region 108779
Tssr108780 11 69682070 to 69682079 9 - TSS region transcription start site region 108780
Tnfsf13os 11 69682138 to 69691141 9003 + antisense lncRNA gene tumor necrosis factor (ligand) superfamily, member 13, opposite strand
Tnfsfm13 11 69682577 to 69696098 13521 - protein coding gene tumor necrosis factor (ligand) superfamily, membrane-bound member 13
Tnfsf13 11 69682846 to 69685784 2938 - protein coding gene tumor necrosis factor (ligand) superfamily, member 13
Tssr102519 11 69684323 to 69684335 12 + TSS region transcription start site region 102519
Tssr102520 11 69684355 to 69684384 29 + TSS region transcription start site region 102520
Tssr102521 11 69684396 to 69684411 15 + TSS region transcription start site region 102521
Tssr102522 11 69684489 to 69684507 18 + TSS region transcription start site region 102522
Tssr102523 11 69684551 to 69684562 11 + TSS region transcription start site region 102523
Tssr108781 11 69685275 to 69685335 60 - TSS region transcription start site region 108781
Tssr108782 11 69685337 to 69685348 11 - TSS region transcription start site region 108782
Tssr108783 11 69685520 to 69685536 16 - TSS region transcription start site region 108783
Tssr108784 11 69685537 to 69685565 28 - TSS region transcription start site region 108784
Tssr102524 11 69685937 to 69685950 13 + TSS region transcription start site region 102524
Tnfsf12 11 69686250 to 69695849 9599 - protein coding gene tumor necrosis factor (ligand) superfamily, member 12