Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:69397494-69777533

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350 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sluc36 11 59365791 to 69591873 10226082 QTL susceptibility to lung cancer 36
Tmem88 11 69396519 to 69398234 1715 - protein coding gene transmembrane protein 88
Cpgi3125 11 69397612 to 69398289 677 CpG island CpG island 3125
Tssr108648 11 69398226 to 69398243 17 - TSS region transcription start site region 108648
Kdm6b 11 69398508 to 69413675 15167 - protein coding gene KDM1 lysine (K)-specific demethylase 6B
Tssr108649 11 69398945 to 69398999 54 - TSS region transcription start site region 108649
Tssr108650 11 69399177 to 69399192 15 - TSS region transcription start site region 108650
Tssr108651 11 69399307 to 69399313 6 - TSS region transcription start site region 108651
Tssr108652 11 69399320 to 69399338 18 - TSS region transcription start site region 108652
Cpgi3126 11 69399396 to 69400259 863 CpG island CpG island 3126
Tssr108653 11 69399421 to 69399445 24 - TSS region transcription start site region 108653
Tssr108654 11 69399602 to 69399606 4 - TSS region transcription start site region 108654
Cpgi3127 11 69401269 to 69401620 351 CpG island CpG island 3127
Tssr108655 11 69401338 to 69401367 29 - TSS region transcription start site region 108655
Kdm6bos 11 69401513 to 69402700 1187 + antisense lncRNA gene KDM1 lysine (K)-specific demethylase 6B, opposite strand
Tssr108656 11 69404972 to 69404996 24 - TSS region transcription start site region 108656
Tssr102454 11 69405178 to 69405195 17 + TSS region transcription start site region 102454
Tssr108657 11 69405231 to 69405259 28 - TSS region transcription start site region 108657
Tssr108658 11 69405268 to 69405286 18 - TSS region transcription start site region 108658
Tssr108659 11 69405442 to 69405461 19 - TSS region transcription start site region 108659
Tssr108660 11 69405873 to 69405911 38 - TSS region transcription start site region 108660
Tssr108661 11 69406755 to 69406770 15 - TSS region transcription start site region 108661
Tssr102455 11 69406853 to 69406878 25 + TSS region transcription start site region 102455
Tssr108662 11 69407606 to 69407620 14 - TSS region transcription start site region 108662
Tssr108663 11 69407637 to 69407649 12 - TSS region transcription start site region 108663
Tssr108664 11 69407813 to 69407831 18 - TSS region transcription start site region 108664
Cpgi3128 11 69408519 to 69411903 3384 CpG island CpG island 3128
Tssr108665 11 69408558 to 69408562 4 - TSS region transcription start site region 108665
Tssr3543 11 69408680 to 69408724 44 - TSS region transcription start site region 3543
Tssr102456 11 69408911 to 69408944 33 + TSS region transcription start site region 102456
Tssr108666 11 69409146 to 69409160 14 - TSS region transcription start site region 108666
Tssr102457 11 69409281 to 69409304 23 + TSS region transcription start site region 102457
Tssr108667 11 69409392 to 69409411 19 - TSS region transcription start site region 108667
Tssr108668 11 69409413 to 69409422 9 - TSS region transcription start site region 108668
Tssr108669 11 69409428 to 69409445 17 - TSS region transcription start site region 108669
Tssr108670 11 69409547 to 69409569 22 - TSS region transcription start site region 108670
Tssr102458 11 69409674 to 69409689 15 + TSS region transcription start site region 102458
Tssr102459 11 69409694 to 69409720 26 + TSS region transcription start site region 102459
Tssr102460 11 69409727 to 69409745 18 + TSS region transcription start site region 102460
Tssr102461 11 69409770 to 69409779 9 + TSS region transcription start site region 102461
Tssr102462 11 69409798 to 69409812 14 + TSS region transcription start site region 102462
Tssr108671 11 69409884 to 69409906 22 - TSS region transcription start site region 108671
Tssr108672 11 69410368 to 69410380 12 - TSS region transcription start site region 108672
Tssr108673 11 69410396 to 69410432 36 - TSS region transcription start site region 108673
Tssr108674 11 69410440 to 69410453 13 - TSS region transcription start site region 108674
Tssr102463 11 69410551 to 69410582 31 + TSS region transcription start site region 102463
Tssr108675 11 69410607 to 69410616 9 - TSS region transcription start site region 108675
Tssr108676 11 69410652 to 69410667 15 - TSS region transcription start site region 108676
Tssr108677 11 69410696 to 69410707 11 - TSS region transcription start site region 108677
Tssr108678 11 69410712 to 69410736 24 - TSS region transcription start site region 108678
Tssr102464 11 69410825 to 69410854 29 + TSS region transcription start site region 102464
Tssr102465 11 69410944 to 69410975 31 + TSS region transcription start site region 102465
Tssr108679 11 69411011 to 69411041 30 - TSS region transcription start site region 108679
Tssr102466 11 69411101 to 69411116 15 + TSS region transcription start site region 102466
Tssr102467 11 69411319 to 69411342 23 + TSS region transcription start site region 102467
Tssr102468 11 69411355 to 69411383 28 + TSS region transcription start site region 102468
Tssr102469 11 69411397 to 69411412 15 + TSS region transcription start site region 102469
Tssr108680 11 69411665 to 69411678 13 - TSS region transcription start site region 108680
Tssr108681 11 69411696 to 69411721 25 - TSS region transcription start site region 108681
Tssr108682 11 69411739 to 69411754 15 - TSS region transcription start site region 108682
Tssr102470 11 69411965 to 69411986 21 + TSS region transcription start site region 102470
Tssr108683 11 69413257 to 69413298 41 - TSS region transcription start site region 108683
Tssr108684 11 69414106 to 69414112 6 - TSS region transcription start site region 108684
Cpgi3129 11 69415852 to 69416006 154 CpG island CpG island 3129
Tssr108685 11 69416145 to 69416167 22 - TSS region transcription start site region 108685
Tssr108686 11 69416188 to 69416227 39 - TSS region transcription start site region 108686
Cpgi3130 11 69417691 to 69419270 1579 CpG island CpG island 3130
Tssr108687 11 69418134 to 69418147 13 - TSS region transcription start site region 108687
Tssr102471 11 69418253 to 69418266 13 + TSS region transcription start site region 102471
Tssr102472 11 69419148 to 69419173 25 + TSS region transcription start site region 102472
Cpgi3131 11 69419570 to 69419908 338 CpG island CpG island 3131
Tssr108688 11 69420328 to 69420353 25 - TSS region transcription start site region 108688
Dnah2 11 69420807 to 69549108 128301 - protein coding gene dynein, axonemal, heavy chain 2
Tssr102473 11 69423335 to 69423338 3 + TSS region transcription start site region 102473
Tssr108689 11 69423862 to 69423867 5 - TSS region transcription start site region 108689
Tssr108690 11 69423884 to 69423892 8 - TSS region transcription start site region 108690
Tssr108691 11 69423908 to 69423911 3 - TSS region transcription start site region 108691
Tssr108692 11 69423928 to 69423953 25 - TSS region transcription start site region 108692
Tssr108693 11 69423971 to 69423977 6 - TSS region transcription start site region 108693
Tssr108694 11 69423991 to 69424012 21 - TSS region transcription start site region 108694
Tssr108695 11 69433105 to 69433114 9 - TSS region transcription start site region 108695
Tssr102474 11 69443643 to 69443648 5 + TSS region transcription start site region 102474
Dnah2os 11 69448548 to 69453676 5128 + antisense lncRNA gene dynein, axonemal, heavy chain 2, opposite strand
Gm27493 11 69505358 to 69505435 77 - miRNA gene predicted gene, 27493
Tssr108696 11 69523224 to 69523228 4 - TSS region transcription start site region 108696
D11Mit298.5 11 69526353 to 69526478 125 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 298.5
D11Mit298 11 69526464 to 69526662 198 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 298
Cpgi3132 11 69546417 to 69546921 504 CpG island CpG island 3132
Tssr108697 11 69546484 to 69546528 44 - TSS region transcription start site region 108697
Efnb3 11 69554092 to 69560205 6113 - protein coding gene ephrin B3
Tssr108698 11 69554771 to 69554811 40 - TSS region transcription start site region 108698
Tssr108699 11 69555566 to 69555613 47 - TSS region transcription start site region 108699
Tssr108700 11 69555778 to 69555789 11 - TSS region transcription start site region 108700
Tssr108701 11 69555973 to 69556009 36 - TSS region transcription start site region 108701
Cpgi3133 11 69559781 to 69560596 815 CpG island CpG island 3133
Tssr108702 11 69560170 to 69560185 15 - TSS region transcription start site region 108702
Tssr108703 11 69560186 to 69560213 27 - TSS region transcription start site region 108703
Tssr108704 11 69560224 to 69560235 11 - TSS region transcription start site region 108704
Wrap53 11 69561758 to 69580255 18497 - protein coding gene WD repeat containing, antisense to Trp53
Tssr102475 11 69573819 to 69573833 14 + TSS region transcription start site region 102475
Rps27-ps2 11 69573827 to 69574168 341 + pseudogene ribosomal protein S27, pseudogene 2
Cpgi3134 11 69578604 to 69579472 868 CpG island CpG island 3134
Tssr108705 11 69579124 to 69579140 16 - TSS region transcription start site region 108705
Tssr108706 11 69579212 to 69579289 77 - TSS region transcription start site region 108706
Tssr108707 11 69579320 to 69579352 32 - TSS region transcription start site region 108707
Tssr108708 11 69579367 to 69579398 31 - TSS region transcription start site region 108708
Tssr108709 11 69580230 to 69580256 26 - TSS region transcription start site region 108709
Tssr102476 11 69580282 to 69580303 21 + TSS region transcription start site region 102476
Cpgi3135 11 69580305 to 69580881 576 CpG island CpG island 3135
Trp53 11 69580359 to 69591873 11514 + protein coding gene transformation related protein 53
Tssr102477 11 69580366 to 69580382 16 + TSS region transcription start site region 102477
Tssr102478 11 69580385 to 69580388 3 + TSS region transcription start site region 102478
Tssr102479 11 69580392 to 69580419 27 + TSS region transcription start site region 102479
Cpgi3136 11 69581112 to 69581703 591 CpG island CpG island 3136
Tssr108710 11 69581193 to 69581212 19 - TSS region transcription start site region 108710
Tssr102480 11 69586020 to 69586052 32 + TSS region transcription start site region 102480
Tssr102481 11 69587494 to 69587533 39 + TSS region transcription start site region 102481
D11Mit107.1 11 69587647 to 69587756 109 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 107.1
D11Mit107 11 69587697 to 69587984 287 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 107
D11Mit107.2 11 69587812 to 69587961 149 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 107.2
Tssr102482 11 69589663 to 69589683 20 + TSS region transcription start site region 102482
Tssr102483 11 69590660 to 69590668 8 + TSS region transcription start site region 102483
Tssr102484 11 69591413 to 69591423 10 + TSS region transcription start site region 102484
Tssr102485 11 69591440 to 69591474 34 + TSS region transcription start site region 102485
Tssr102486 11 69591490 to 69591508 18 + TSS region transcription start site region 102486
Tssr108711 11 69592084 to 69592091 7 - TSS region transcription start site region 108711
Atp1b2 11 69599736 to 69605942 6206 - protein coding gene ATPase, Na+/K+ transporting, beta 2 polypeptide
Tssr108712 11 69600007 to 69600018 11 - TSS region transcription start site region 108712
Tssr102487 11 69600013 to 69600040 27 + TSS region transcription start site region 102487
Tssr108713 11 69600152 to 69600169 17 - TSS region transcription start site region 108713
Tssr108714 11 69600234 to 69600237 3 - TSS region transcription start site region 108714
Tssr108715 11 69600247 to 69600271 24 - TSS region transcription start site region 108715
Tssr108716 11 69600559 to 69600575 16 - TSS region transcription start site region 108716
Tssr108717 11 69600584 to 69600589 5 - TSS region transcription start site region 108717
Tssr108718 11 69600643 to 69600653 10 - TSS region transcription start site region 108718
Tssr108719 11 69600654 to 69600655 1 - TSS region transcription start site region 108719
Tssr108720 11 69600658 to 69600671 13 - TSS region transcription start site region 108720
Tssr108721 11 69600672 to 69600680 8 - TSS region transcription start site region 108721
Tssr3544 11 69600695 to 69600704 9 - TSS region transcription start site region 3544
Tssr108722 11 69600753 to 69600758 5 - TSS region transcription start site region 108722
Tssr108723 11 69600781 to 69600795 14 - TSS region transcription start site region 108723
Tssr108724 11 69600834 to 69600841 7 - TSS region transcription start site region 108724
Tssr108725 11 69600858 to 69600863 5 - TSS region transcription start site region 108725
Tssr108726 11 69600953 to 69600965 12 - TSS region transcription start site region 108726
Tssr108727 11 69600975 to 69600986 11 - TSS region transcription start site region 108727
Tssr108728 11 69601019 to 69601030 11 - TSS region transcription start site region 108728
Tssr108729 11 69601106 to 69601115 9 - TSS region transcription start site region 108729
Tssr108730 11 69601138 to 69601147 9 - TSS region transcription start site region 108730
Tssr102488 11 69601163 to 69601203 40 + TSS region transcription start site region 102488
Tssr108731 11 69601169 to 69601189 20 - TSS region transcription start site region 108731
Tssr108732 11 69601230 to 69601250 20 - TSS region transcription start site region 108732
Tssr102489 11 69601238 to 69601249 11 + TSS region transcription start site region 102489
Tssr108733 11 69602452 to 69602465 13 - TSS region transcription start site region 108733
Tssr108734 11 69602743 to 69602783 40 - TSS region transcription start site region 108734
Tssr108735 11 69602810 to 69602832 22 - TSS region transcription start site region 108735
Tssr108736 11 69602848 to 69602860 12 - TSS region transcription start site region 108736
Tssr108737 11 69603538 to 69603562 24 - TSS region transcription start site region 108737
Ppiq9a 11 69603559 to 69603559 0 QTL prepulse inhibition QTL 9a
Cpgi3137 11 69604691 to 69606028 1337 CpG island CpG island 3137
Tssr108738 11 69605953 to 69605971 18 - TSS region transcription start site region 108738
Shbg 11 69614804 to 69617905 3101 - protein coding gene sex hormone binding globulin
Tssr108739 11 69616974 to 69616985 11 - TSS region transcription start site region 108739
Tssr108740 11 69617589 to 69617594 5 - TSS region transcription start site region 108740
Tssr108741 11 69617722 to 69617739 17 - TSS region transcription start site region 108741
Tssr108742 11 69617861 to 69617873 12 - TSS region transcription start site region 108742
Tssr108743 11 69617879 to 69617926 47 - TSS region transcription start site region 108743
Tssr108744 11 69618069 to 69618085 16 - TSS region transcription start site region 108744
Sat2 11 69622024 to 69623870 1846 + protein coding gene spermidine/spermine N1-acetyl transferase 2
Tssr102490 11 69622044 to 69622101 57 + TSS region transcription start site region 102490
Gm12308 11 69630924 to 69631312 388 - pseudogene predicted gene 12308
Tssr108745 11 69631333 to 69631343 10 - TSS region transcription start site region 108745
Gm12309 11 69631522 to 69631703 181 - pseudogene predicted gene 12309
Cpgi3138 11 69632468 to 69633829 1361 CpG island CpG island 3138
Tssr102491 11 69632927 to 69633002 75 + TSS region transcription start site region 102491
Fxr2 11 69632990 to 69653297 20307 + protein coding gene fragile X mental retardation, autosomal homolog 2
Tssr102492 11 69633042 to 69633053 11 + TSS region transcription start site region 102492
Tssr102493 11 69633256 to 69633284 28 + TSS region transcription start site region 102493
Tssr102494 11 69633745 to 69633750 5 + TSS region transcription start site region 102494
Mir467f 11 69635400 to 69635519 119 - miRNA gene microRNA 467f
Tssr102495 11 69642786 to 69642788 2 + TSS region transcription start site region 102495
Tssr102496 11 69645169 to 69645178 9 + TSS region transcription start site region 102496
Tssr102497 11 69654999 to 69655013 14 + TSS region transcription start site region 102497
Tssr102498 11 69655029 to 69655055 26 + TSS region transcription start site region 102498
Sox15 11 69655314 to 69656727 1413 + protein coding gene SRY (sex determining region Y)-box 15
Cpgi3139 11 69655380 to 69655921 541 CpG island CpG island 3139
Tssr102499 11 69655559 to 69655567 8 + TSS region transcription start site region 102499
Tssr102500 11 69655584 to 69655608 24 + TSS region transcription start site region 102500
Tssr102501 11 69655617 to 69655630 13 + TSS region transcription start site region 102501
Tssr102502 11 69655711 to 69655733 22 + TSS region transcription start site region 102502
Tssr102503 11 69655808 to 69655819 11 + TSS region transcription start site region 102503
Tssr102504 11 69655840 to 69655857 17 + TSS region transcription start site region 102504
Tssr102505 11 69656522 to 69656532 10 + TSS region transcription start site region 102505
Mpdu1 11 69656697 to 69662642 5945 - protein coding gene mannose-P-dolichol utilization defect 1
Cpgi3140 11 69662187 to 69662943 756 CpG island CpG island 3140
Tssr102506 11 69662353 to 69662380 27 + TSS region transcription start site region 102506
Tssr108746 11 69662569 to 69662596 27 - TSS region transcription start site region 108746
Tssr108747 11 69662625 to 69662636 11 - TSS region transcription start site region 108747
Tssr102507 11 69662638 to 69662646 8 + TSS region transcription start site region 102507
Mir1934 11 69663043 to 69663125 82 + miRNA gene microRNA 1934
Tssr102508 11 69664170 to 69664184 14 + TSS region transcription start site region 102508