Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:69251252-69401275

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83 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm40039 11 69249929 to 69262080 12151 - lncRNA gene predicted gene, 40039
D11Mit278.2 11 69287543 to 69287657 114 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 278.2
D11Mit278 11 69287607 to 69287720 113 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 278
D11Mit278.1 11 69287723 to 69287869 146 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 278.1
Cntrobos 11 69294151 to 69295477 1326 + antisense lncRNA gene centrobin, centrosomal BRCA2 interacting protein, opposite strand
Cntrob 11 69299487 to 69323775 24288 - protein coding gene centrobin, centrosomal BRCA2 interacting protein
Cpgi3117 11 69323550 to 69324103 553 CpG island CpG island 3117
Tssr108630 11 69323736 to 69323765 29 - TSS region transcription start site region 108630
Tssr108631 11 69323768 to 69323832 64 - TSS region transcription start site region 108631
Tssr102425 11 69323963 to 69324043 80 + TSS region transcription start site region 102425
Trappc1 11 69323986 to 69325793 1807 + protein coding gene trafficking protein particle complex 1
Tssr102426 11 69324055 to 69324065 10 + TSS region transcription start site region 102426
Tssr102427 11 69324069 to 69324111 42 + TSS region transcription start site region 102427
Tssr102428 11 69324145 to 69324156 11 + TSS region transcription start site region 102428
Tssr102429 11 69325559 to 69325584 25 + TSS region transcription start site region 102429
Cpgi3118 11 69326076 to 69326909 833 CpG island CpG island 3118
Tssr102430 11 69326252 to 69326275 23 + TSS region transcription start site region 102430
Kcnab3 11 69326258 to 69333042 6784 + protein coding gene potassium voltage-gated channel, shaker-related subfamily, beta member 3
Tssr102431 11 69326284 to 69326314 30 + TSS region transcription start site region 102431
Tssr102432 11 69326317 to 69326339 22 + TSS region transcription start site region 102432
Tssr102433 11 69326346 to 69326355 9 + TSS region transcription start site region 102433
Tssr102434 11 69326668 to 69326681 13 + TSS region transcription start site region 102434
Tssr102435 11 69326696 to 69326716 20 + TSS region transcription start site region 102435
Tssr102436 11 69327860 to 69327868 8 + TSS region transcription start site region 102436
Kcnab3os 11 69329825 to 69332122 2297 - antisense lncRNA gene potassium voltage-gated channel, shaker-related subfamily, beta member 3, opposite strand
Tssr102437 11 69331365 to 69331373 8 + TSS region transcription start site region 102437
Tssr102438 11 69331437 to 69331451 14 + TSS region transcription start site region 102438
Cpgi3119 11 69331996 to 69332478 482 CpG island CpG island 3119
Tssr108632 11 69332091 to 69332100 9 - TSS region transcription start site region 108632
Tssr108633 11 69332106 to 69332128 22 - TSS region transcription start site region 108633
Cpgi3120 11 69339952 to 69341401 1449 CpG island CpG island 3120
Tssr102439 11 69339987 to 69339989 2 + TSS region transcription start site region 102439
Tssr102440 11 69340448 to 69340457 9 + TSS region transcription start site region 102440
Tssr102441 11 69340751 to 69340756 5 + TSS region transcription start site region 102441
Tssr102442 11 69340763 to 69340838 75 + TSS region transcription start site region 102442
Rnf227 11 69340769 to 69342647 1878 + protein coding gene ring finger protein 227
Chd3 11 69343273 to 69369406 26133 - protein coding gene chromodomain helicase DNA binding protein 3
Gm22442 11 69350518 to 69350661 143 - snoRNA gene predicted gene, 22442
Tssr108634 11 69350715 to 69350719 4 - TSS region transcription start site region 108634
Tssr102443 11 69360625 to 69360673 48 + TSS region transcription start site region 102443
Tssr102444 11 69364010 to 69364041 31 + TSS region transcription start site region 102444
Tssr108635 11 69364496 to 69364510 14 - TSS region transcription start site region 108635
Tssr108636 11 69364930 to 69364983 53 - TSS region transcription start site region 108636
Cpgi3121 11 69366065 to 69366370 305 CpG island CpG island 3121
Tssr108637 11 69366459 to 69366470 11 - TSS region transcription start site region 108637
Tssr108638 11 69368050 to 69368093 43 - TSS region transcription start site region 108638
Cpgi3122 11 69368074 to 69369549 1475 CpG island CpG island 3122
Tssr102445 11 69368289 to 69368300 11 + TSS region transcription start site region 102445
Tssr102446 11 69368316 to 69368326 10 + TSS region transcription start site region 102446
Tssr102447 11 69368332 to 69368348 16 + TSS region transcription start site region 102447
Tssr3542 11 69368850 to 69368874 24 + TSS region transcription start site region 3542
Tssr102448 11 69368878 to 69368901 23 + TSS region transcription start site region 102448
Tssr108639 11 69369236 to 69369247 11 - TSS region transcription start site region 108639
Tssr108640 11 69369346 to 69369366 20 - TSS region transcription start site region 108640
Tssr108641 11 69369377 to 69369415 38 - TSS region transcription start site region 108641
Gm32483 11 69369559 to 69374316 4757 + lncRNA gene predicted gene, 32483
Tssr108642 11 69369682 to 69369706 24 - TSS region transcription start site region 108642
Tssr108643 11 69369799 to 69369853 54 - TSS region transcription start site region 108643
Tssr108644 11 69370150 to 69370182 32 - TSS region transcription start site region 108644
Tssr102449 11 69373754 to 69373796 42 + TSS region transcription start site region 102449
Cyb5d1 11 69391925 to 69395631 3706 - protein coding gene cytochrome b5 domain containing 1
Cpgi3123 11 69394778 to 69395107 329 CpG island CpG island 3123
Tssr108645 11 69395135 to 69395139 4 - TSS region transcription start site region 108645
Tssr108646 11 69395432 to 69395478 46 - TSS region transcription start site region 108646
Cpgi3124 11 69395439 to 69396419 980 CpG island CpG island 3124
Tssr108647 11 69395663 to 69395712 49 - TSS region transcription start site region 108647
Tssr102450 11 69395747 to 69395754 7 + TSS region transcription start site region 102450
Tssr102451 11 69395785 to 69395828 43 + TSS region transcription start site region 102451
Naa38 11 69395791 to 69396671 880 + protein coding gene N(alpha)-acetyltransferase 38, NatC auxiliary subunit
Tssr102452 11 69395829 to 69395862 33 + TSS region transcription start site region 102452
Tssr102453 11 69396107 to 69396180 73 + TSS region transcription start site region 102453
Tmem88 11 69396519 to 69398234 1715 - protein coding gene transmembrane protein 88
Cpgi3125 11 69397612 to 69398289 677 CpG island CpG island 3125
Tssr108648 11 69398226 to 69398243 17 - TSS region transcription start site region 108648
Kdm6b 11 69398508 to 69413675 15167 - protein coding gene KDM1 lysine (K)-specific demethylase 6B
Tssr108649 11 69398945 to 69398999 54 - TSS region transcription start site region 108649
Tssr108650 11 69399177 to 69399192 15 - TSS region transcription start site region 108650
Tssr108651 11 69399307 to 69399313 6 - TSS region transcription start site region 108651
Tssr108652 11 69399320 to 69399338 18 - TSS region transcription start site region 108652
Cpgi3126 11 69399396 to 69400259 863 CpG island CpG island 3126
Tssr108653 11 69399421 to 69399445 24 - TSS region transcription start site region 108653
Tssr108654 11 69399602 to 69399606 4 - TSS region transcription start site region 108654
Cpgi3127 11 69401269 to 69401620 351 CpG island CpG island 3127