Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:69182543-69392657

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72 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Alox8 11 69183932 to 69197843 13911 - protein coding gene arachidonate 8-lipoxygenase
Cpgi3112 11 69197298 to 69197731 433 CpG island CpG island 3112
Tssr108627 11 69197445 to 69197491 46 - TSS region transcription start site region 108627
Tssr108628 11 69197834 to 69197838 4 - TSS region transcription start site region 108628
Gucy2e 11 69218117 to 69237036 18919 - protein coding gene guanylate cyclase 2e
Cpgi3113 11 69223556 to 69223878 322 CpG island CpG island 3113
Cpgi3114 11 69224133 to 69224341 208 CpG island CpG island 3114
Cpgi3115 11 69227965 to 69228219 254 CpG island CpG island 3115
Cpgi3116 11 69235408 to 69236717 1309 CpG island CpG island 3116
Tssr108629 11 69237029 to 69237044 15 - TSS region transcription start site region 108629
Gm23194 11 69240599 to 69240703 104 + snRNA gene predicted gene, 23194
Gm40039 11 69249929 to 69262080 12151 - lncRNA gene predicted gene, 40039
D11Mit278.2 11 69287543 to 69287657 114 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 278.2
D11Mit278 11 69287607 to 69287720 113 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 278
D11Mit278.1 11 69287723 to 69287869 146 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 278.1
Cntrobos 11 69294151 to 69295477 1326 + antisense lncRNA gene centrobin, centrosomal BRCA2 interacting protein, opposite strand
Cntrob 11 69299487 to 69323775 24288 - protein coding gene centrobin, centrosomal BRCA2 interacting protein
Cpgi3117 11 69323550 to 69324103 553 CpG island CpG island 3117
Tssr108630 11 69323736 to 69323765 29 - TSS region transcription start site region 108630
Tssr108631 11 69323768 to 69323832 64 - TSS region transcription start site region 108631
Tssr102425 11 69323963 to 69324043 80 + TSS region transcription start site region 102425
Trappc1 11 69323986 to 69325793 1807 + protein coding gene trafficking protein particle complex 1
Tssr102426 11 69324055 to 69324065 10 + TSS region transcription start site region 102426
Tssr102427 11 69324069 to 69324111 42 + TSS region transcription start site region 102427
Tssr102428 11 69324145 to 69324156 11 + TSS region transcription start site region 102428
Tssr102429 11 69325559 to 69325584 25 + TSS region transcription start site region 102429
Cpgi3118 11 69326076 to 69326909 833 CpG island CpG island 3118
Tssr102430 11 69326252 to 69326275 23 + TSS region transcription start site region 102430
Kcnab3 11 69326258 to 69333042 6784 + protein coding gene potassium voltage-gated channel, shaker-related subfamily, beta member 3
Tssr102431 11 69326284 to 69326314 30 + TSS region transcription start site region 102431
Tssr102432 11 69326317 to 69326339 22 + TSS region transcription start site region 102432
Tssr102433 11 69326346 to 69326355 9 + TSS region transcription start site region 102433
Tssr102434 11 69326668 to 69326681 13 + TSS region transcription start site region 102434
Tssr102435 11 69326696 to 69326716 20 + TSS region transcription start site region 102435
Tssr102436 11 69327860 to 69327868 8 + TSS region transcription start site region 102436
Kcnab3os 11 69329825 to 69332122 2297 - antisense lncRNA gene potassium voltage-gated channel, shaker-related subfamily, beta member 3, opposite strand
Tssr102437 11 69331365 to 69331373 8 + TSS region transcription start site region 102437
Tssr102438 11 69331437 to 69331451 14 + TSS region transcription start site region 102438
Cpgi3119 11 69331996 to 69332478 482 CpG island CpG island 3119
Tssr108632 11 69332091 to 69332100 9 - TSS region transcription start site region 108632
Tssr108633 11 69332106 to 69332128 22 - TSS region transcription start site region 108633
Cpgi3120 11 69339952 to 69341401 1449 CpG island CpG island 3120
Tssr102439 11 69339987 to 69339989 2 + TSS region transcription start site region 102439
Tssr102440 11 69340448 to 69340457 9 + TSS region transcription start site region 102440
Tssr102441 11 69340751 to 69340756 5 + TSS region transcription start site region 102441
Tssr102442 11 69340763 to 69340838 75 + TSS region transcription start site region 102442
Rnf227 11 69340769 to 69342647 1878 + protein coding gene ring finger protein 227
Chd3 11 69343273 to 69369406 26133 - protein coding gene chromodomain helicase DNA binding protein 3
Gm22442 11 69350518 to 69350661 143 - snoRNA gene predicted gene, 22442
Tssr108634 11 69350715 to 69350719 4 - TSS region transcription start site region 108634
Tssr102443 11 69360625 to 69360673 48 + TSS region transcription start site region 102443
Tssr102444 11 69364010 to 69364041 31 + TSS region transcription start site region 102444
Tssr108635 11 69364496 to 69364510 14 - TSS region transcription start site region 108635
Tssr108636 11 69364930 to 69364983 53 - TSS region transcription start site region 108636
Cpgi3121 11 69366065 to 69366370 305 CpG island CpG island 3121
Tssr108637 11 69366459 to 69366470 11 - TSS region transcription start site region 108637
Tssr108638 11 69368050 to 69368093 43 - TSS region transcription start site region 108638
Cpgi3122 11 69368074 to 69369549 1475 CpG island CpG island 3122
Tssr102445 11 69368289 to 69368300 11 + TSS region transcription start site region 102445
Tssr102446 11 69368316 to 69368326 10 + TSS region transcription start site region 102446
Tssr102447 11 69368332 to 69368348 16 + TSS region transcription start site region 102447
Tssr3542 11 69368850 to 69368874 24 + TSS region transcription start site region 3542
Tssr102448 11 69368878 to 69368901 23 + TSS region transcription start site region 102448
Tssr108639 11 69369236 to 69369247 11 - TSS region transcription start site region 108639
Tssr108640 11 69369346 to 69369366 20 - TSS region transcription start site region 108640
Tssr108641 11 69369377 to 69369415 38 - TSS region transcription start site region 108641
Gm32483 11 69369559 to 69374316 4757 + lncRNA gene predicted gene, 32483
Tssr108642 11 69369682 to 69369706 24 - TSS region transcription start site region 108642
Tssr108643 11 69369799 to 69369853 54 - TSS region transcription start site region 108643
Tssr108644 11 69370150 to 69370182 32 - TSS region transcription start site region 108644
Tssr102449 11 69373754 to 69373796 42 + TSS region transcription start site region 102449
Cyb5d1 11 69391925 to 69395631 3706 - protein coding gene cytochrome b5 domain containing 1