Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:69101076-69551909

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202 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Per1 11 69095217 to 69109960 14743 + protein coding gene period circadian clock 1
Tssr102412 11 69103365 to 69103383 18 + TSS region transcription start site region 102412
Tssr102413 11 69103647 to 69103691 44 + TSS region transcription start site region 102413
n-TTagt5 11 69110465 to 69110538 73 + tRNA gene nuclear encoded tRNA threonine 5 (anticodon AGT)
Cpgi3105 11 69110859 to 69111269 410 CpG island CpG island 3105
n-TScga3 11 69110919 to 69111000 81 + tRNA gene nuclear encoded tRNA serine 14 (anticodon CGA)
Cpgi3106 11 69117749 to 69118305 556 CpG island CpG island 3106
n-TGgcc5 11 69118794 to 69118864 70 - tRNA gene nuclear encoded tRNA glycine 5 (anticodon GCC)
9130213A22Rik 11 69120054 to 69122589 2535 - unclassified gene RIKEN cDNA 9130213A22 gene
Hes7 11 69120404 to 69124055 3651 + protein coding gene hes family bHLH transcription factor 7
Cpgi3107 11 69120972 to 69123591 2619 CpG island CpG island 3107
n-TRtct4 11 69123482 to 69123568 86 - tRNA gene nuclear encoded tRNA arginine 4 (anticodon TCT)
Cpgi3108 11 69124080 to 69124337 257 CpG island CpG island 3108
n-TLtag3 11 69124241 to 69124322 81 + tRNA gene nuclear encoded tRNA leucine 3 (anticodon TAG)
n-TQctg6 11 69124607 to 69124678 71 - tRNA gene nuclear encoded tRNA glutamine 6 (anticodon CTG)
n-TKctt27 11 69125176 to 69125248 72 - tRNA gene nuclear encoded tRNA lysine 27 (anticodon TTT)
Aloxe3 11 69125896 to 69149115 23219 + protein coding gene arachidonate lipoxygenase 3
Tssr102414 11 69126104 to 69126116 12 + TSS region transcription start site region 102414
Tssr102415 11 69126186 to 69126210 24 + TSS region transcription start site region 102415
Tssr102416 11 69126218 to 69126249 31 + TSS region transcription start site region 102416
Cpgi3109 11 69133997 to 69134661 664 CpG island CpG island 3109
Tssr102417 11 69134135 to 69134164 29 + TSS region transcription start site region 102417
Cpgi3110 11 69135001 to 69135233 232 CpG island CpG island 3110
Tssr102418 11 69142562 to 69142566 4 + TSS region transcription start site region 102418
Tssr102419 11 69156888 to 69156901 13 + TSS region transcription start site region 102419
Tssr102420 11 69156913 to 69156916 3 + TSS region transcription start site region 102420
Cpgi3111 11 69156939 to 69157335 396 CpG island CpG island 3111
Tssr102421 11 69157032 to 69157051 19 + TSS region transcription start site region 102421
Tssr102422 11 69157053 to 69157061 8 + TSS region transcription start site region 102422
Tssr102423 11 69157063 to 69157081 18 + TSS region transcription start site region 102423
Alox12b 11 69157072 to 69169791 12719 + protein coding gene arachidonate 12-lipoxygenase, 12R type
Tssr102424 11 69157084 to 69157110 26 + TSS region transcription start site region 102424
Alox8 11 69183932 to 69197843 13911 - protein coding gene arachidonate 8-lipoxygenase
Cpgi3112 11 69197298 to 69197731 433 CpG island CpG island 3112
Tssr108627 11 69197445 to 69197491 46 - TSS region transcription start site region 108627
Tssr108628 11 69197834 to 69197838 4 - TSS region transcription start site region 108628
Gucy2e 11 69218117 to 69237036 18919 - protein coding gene guanylate cyclase 2e
Cpgi3113 11 69223556 to 69223878 322 CpG island CpG island 3113
Cpgi3114 11 69224133 to 69224341 208 CpG island CpG island 3114
Cpgi3115 11 69227965 to 69228219 254 CpG island CpG island 3115
Cpgi3116 11 69235408 to 69236717 1309 CpG island CpG island 3116
Tssr108629 11 69237029 to 69237044 15 - TSS region transcription start site region 108629
Gm23194 11 69240599 to 69240703 104 + snRNA gene predicted gene, 23194
Gm40039 11 69249929 to 69262080 12151 - lncRNA gene predicted gene, 40039
D11Mit278.2 11 69287543 to 69287657 114 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 278.2
D11Mit278 11 69287607 to 69287720 113 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 278
D11Mit278.1 11 69287723 to 69287869 146 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 278.1
Cntrobos 11 69294151 to 69295477 1326 + antisense lncRNA gene centrobin, centrosomal BRCA2 interacting protein, opposite strand
Cntrob 11 69299487 to 69323775 24288 - protein coding gene centrobin, centrosomal BRCA2 interacting protein
Cpgi3117 11 69323550 to 69324103 553 CpG island CpG island 3117
Tssr108630 11 69323736 to 69323765 29 - TSS region transcription start site region 108630
Tssr108631 11 69323768 to 69323832 64 - TSS region transcription start site region 108631
Tssr102425 11 69323963 to 69324043 80 + TSS region transcription start site region 102425
Trappc1 11 69323986 to 69325793 1807 + protein coding gene trafficking protein particle complex 1
Tssr102426 11 69324055 to 69324065 10 + TSS region transcription start site region 102426
Tssr102427 11 69324069 to 69324111 42 + TSS region transcription start site region 102427
Tssr102428 11 69324145 to 69324156 11 + TSS region transcription start site region 102428
Tssr102429 11 69325559 to 69325584 25 + TSS region transcription start site region 102429
Cpgi3118 11 69326076 to 69326909 833 CpG island CpG island 3118
Tssr102430 11 69326252 to 69326275 23 + TSS region transcription start site region 102430
Kcnab3 11 69326258 to 69333042 6784 + protein coding gene potassium voltage-gated channel, shaker-related subfamily, beta member 3
Tssr102431 11 69326284 to 69326314 30 + TSS region transcription start site region 102431
Tssr102432 11 69326317 to 69326339 22 + TSS region transcription start site region 102432
Tssr102433 11 69326346 to 69326355 9 + TSS region transcription start site region 102433
Tssr102434 11 69326668 to 69326681 13 + TSS region transcription start site region 102434
Tssr102435 11 69326696 to 69326716 20 + TSS region transcription start site region 102435
Tssr102436 11 69327860 to 69327868 8 + TSS region transcription start site region 102436
Kcnab3os 11 69329825 to 69332122 2297 - antisense lncRNA gene potassium voltage-gated channel, shaker-related subfamily, beta member 3, opposite strand
Tssr102437 11 69331365 to 69331373 8 + TSS region transcription start site region 102437
Tssr102438 11 69331437 to 69331451 14 + TSS region transcription start site region 102438
Cpgi3119 11 69331996 to 69332478 482 CpG island CpG island 3119
Tssr108632 11 69332091 to 69332100 9 - TSS region transcription start site region 108632
Tssr108633 11 69332106 to 69332128 22 - TSS region transcription start site region 108633
Cpgi3120 11 69339952 to 69341401 1449 CpG island CpG island 3120
Tssr102439 11 69339987 to 69339989 2 + TSS region transcription start site region 102439
Tssr102440 11 69340448 to 69340457 9 + TSS region transcription start site region 102440
Tssr102441 11 69340751 to 69340756 5 + TSS region transcription start site region 102441
Tssr102442 11 69340763 to 69340838 75 + TSS region transcription start site region 102442
Rnf227 11 69340769 to 69342647 1878 + protein coding gene ring finger protein 227
Chd3 11 69343273 to 69369406 26133 - protein coding gene chromodomain helicase DNA binding protein 3
Gm22442 11 69350518 to 69350661 143 - snoRNA gene predicted gene, 22442
Tssr108634 11 69350715 to 69350719 4 - TSS region transcription start site region 108634
Tssr102443 11 69360625 to 69360673 48 + TSS region transcription start site region 102443
Tssr102444 11 69364010 to 69364041 31 + TSS region transcription start site region 102444
Tssr108635 11 69364496 to 69364510 14 - TSS region transcription start site region 108635
Tssr108636 11 69364930 to 69364983 53 - TSS region transcription start site region 108636
Cpgi3121 11 69366065 to 69366370 305 CpG island CpG island 3121
Tssr108637 11 69366459 to 69366470 11 - TSS region transcription start site region 108637
Tssr108638 11 69368050 to 69368093 43 - TSS region transcription start site region 108638
Cpgi3122 11 69368074 to 69369549 1475 CpG island CpG island 3122
Tssr102445 11 69368289 to 69368300 11 + TSS region transcription start site region 102445
Tssr102446 11 69368316 to 69368326 10 + TSS region transcription start site region 102446
Tssr102447 11 69368332 to 69368348 16 + TSS region transcription start site region 102447
Tssr3542 11 69368850 to 69368874 24 + TSS region transcription start site region 3542
Tssr102448 11 69368878 to 69368901 23 + TSS region transcription start site region 102448
Tssr108639 11 69369236 to 69369247 11 - TSS region transcription start site region 108639
Tssr108640 11 69369346 to 69369366 20 - TSS region transcription start site region 108640
Tssr108641 11 69369377 to 69369415 38 - TSS region transcription start site region 108641
Gm32483 11 69369559 to 69374316 4757 + lncRNA gene predicted gene, 32483
Tssr108642 11 69369682 to 69369706 24 - TSS region transcription start site region 108642
Tssr108643 11 69369799 to 69369853 54 - TSS region transcription start site region 108643
Tssr108644 11 69370150 to 69370182 32 - TSS region transcription start site region 108644
Tssr102449 11 69373754 to 69373796 42 + TSS region transcription start site region 102449
Cyb5d1 11 69391925 to 69395631 3706 - protein coding gene cytochrome b5 domain containing 1
Cpgi3123 11 69394778 to 69395107 329 CpG island CpG island 3123
Tssr108645 11 69395135 to 69395139 4 - TSS region transcription start site region 108645
Tssr108646 11 69395432 to 69395478 46 - TSS region transcription start site region 108646
Cpgi3124 11 69395439 to 69396419 980 CpG island CpG island 3124
Tssr108647 11 69395663 to 69395712 49 - TSS region transcription start site region 108647
Tssr102450 11 69395747 to 69395754 7 + TSS region transcription start site region 102450
Tssr102451 11 69395785 to 69395828 43 + TSS region transcription start site region 102451
Naa38 11 69395791 to 69396671 880 + protein coding gene N(alpha)-acetyltransferase 38, NatC auxiliary subunit
Tssr102452 11 69395829 to 69395862 33 + TSS region transcription start site region 102452
Tssr102453 11 69396107 to 69396180 73 + TSS region transcription start site region 102453
Tmem88 11 69396519 to 69398234 1715 - protein coding gene transmembrane protein 88
Cpgi3125 11 69397612 to 69398289 677 CpG island CpG island 3125
Tssr108648 11 69398226 to 69398243 17 - TSS region transcription start site region 108648
Kdm6b 11 69398508 to 69413675 15167 - protein coding gene KDM1 lysine (K)-specific demethylase 6B
Tssr108649 11 69398945 to 69398999 54 - TSS region transcription start site region 108649
Tssr108650 11 69399177 to 69399192 15 - TSS region transcription start site region 108650
Tssr108651 11 69399307 to 69399313 6 - TSS region transcription start site region 108651
Tssr108652 11 69399320 to 69399338 18 - TSS region transcription start site region 108652
Cpgi3126 11 69399396 to 69400259 863 CpG island CpG island 3126
Tssr108653 11 69399421 to 69399445 24 - TSS region transcription start site region 108653
Tssr108654 11 69399602 to 69399606 4 - TSS region transcription start site region 108654
Cpgi3127 11 69401269 to 69401620 351 CpG island CpG island 3127
Tssr108655 11 69401338 to 69401367 29 - TSS region transcription start site region 108655
Kdm6bos 11 69401513 to 69402700 1187 + antisense lncRNA gene KDM1 lysine (K)-specific demethylase 6B, opposite strand
Tssr108656 11 69404972 to 69404996 24 - TSS region transcription start site region 108656
Tssr102454 11 69405178 to 69405195 17 + TSS region transcription start site region 102454
Tssr108657 11 69405231 to 69405259 28 - TSS region transcription start site region 108657
Tssr108658 11 69405268 to 69405286 18 - TSS region transcription start site region 108658
Tssr108659 11 69405442 to 69405461 19 - TSS region transcription start site region 108659
Tssr108660 11 69405873 to 69405911 38 - TSS region transcription start site region 108660
Tssr108661 11 69406755 to 69406770 15 - TSS region transcription start site region 108661
Tssr102455 11 69406853 to 69406878 25 + TSS region transcription start site region 102455
Tssr108662 11 69407606 to 69407620 14 - TSS region transcription start site region 108662
Tssr108663 11 69407637 to 69407649 12 - TSS region transcription start site region 108663
Tssr108664 11 69407813 to 69407831 18 - TSS region transcription start site region 108664
Cpgi3128 11 69408519 to 69411903 3384 CpG island CpG island 3128
Tssr108665 11 69408558 to 69408562 4 - TSS region transcription start site region 108665
Tssr3543 11 69408680 to 69408724 44 - TSS region transcription start site region 3543
Tssr102456 11 69408911 to 69408944 33 + TSS region transcription start site region 102456
Tssr108666 11 69409146 to 69409160 14 - TSS region transcription start site region 108666
Tssr102457 11 69409281 to 69409304 23 + TSS region transcription start site region 102457
Tssr108667 11 69409392 to 69409411 19 - TSS region transcription start site region 108667
Tssr108668 11 69409413 to 69409422 9 - TSS region transcription start site region 108668
Tssr108669 11 69409428 to 69409445 17 - TSS region transcription start site region 108669
Tssr108670 11 69409547 to 69409569 22 - TSS region transcription start site region 108670
Tssr102458 11 69409674 to 69409689 15 + TSS region transcription start site region 102458
Tssr102459 11 69409694 to 69409720 26 + TSS region transcription start site region 102459
Tssr102460 11 69409727 to 69409745 18 + TSS region transcription start site region 102460
Tssr102461 11 69409770 to 69409779 9 + TSS region transcription start site region 102461
Tssr102462 11 69409798 to 69409812 14 + TSS region transcription start site region 102462
Tssr108671 11 69409884 to 69409906 22 - TSS region transcription start site region 108671
Tssr108672 11 69410368 to 69410380 12 - TSS region transcription start site region 108672
Tssr108673 11 69410396 to 69410432 36 - TSS region transcription start site region 108673
Tssr108674 11 69410440 to 69410453 13 - TSS region transcription start site region 108674
Tssr102463 11 69410551 to 69410582 31 + TSS region transcription start site region 102463
Tssr108675 11 69410607 to 69410616 9 - TSS region transcription start site region 108675
Tssr108676 11 69410652 to 69410667 15 - TSS region transcription start site region 108676
Tssr108677 11 69410696 to 69410707 11 - TSS region transcription start site region 108677
Tssr108678 11 69410712 to 69410736 24 - TSS region transcription start site region 108678
Tssr102464 11 69410825 to 69410854 29 + TSS region transcription start site region 102464
Tssr102465 11 69410944 to 69410975 31 + TSS region transcription start site region 102465
Tssr108679 11 69411011 to 69411041 30 - TSS region transcription start site region 108679
Tssr102466 11 69411101 to 69411116 15 + TSS region transcription start site region 102466
Tssr102467 11 69411319 to 69411342 23 + TSS region transcription start site region 102467
Tssr102468 11 69411355 to 69411383 28 + TSS region transcription start site region 102468
Tssr102469 11 69411397 to 69411412 15 + TSS region transcription start site region 102469
Tssr108680 11 69411665 to 69411678 13 - TSS region transcription start site region 108680
Tssr108681 11 69411696 to 69411721 25 - TSS region transcription start site region 108681
Tssr108682 11 69411739 to 69411754 15 - TSS region transcription start site region 108682
Tssr102470 11 69411965 to 69411986 21 + TSS region transcription start site region 102470
Tssr108683 11 69413257 to 69413298 41 - TSS region transcription start site region 108683
Tssr108684 11 69414106 to 69414112 6 - TSS region transcription start site region 108684
Cpgi3129 11 69415852 to 69416006 154 CpG island CpG island 3129
Tssr108685 11 69416145 to 69416167 22 - TSS region transcription start site region 108685
Tssr108686 11 69416188 to 69416227 39 - TSS region transcription start site region 108686
Cpgi3130 11 69417691 to 69419270 1579 CpG island CpG island 3130
Tssr108687 11 69418134 to 69418147 13 - TSS region transcription start site region 108687
Tssr102471 11 69418253 to 69418266 13 + TSS region transcription start site region 102471
Tssr102472 11 69419148 to 69419173 25 + TSS region transcription start site region 102472
Cpgi3131 11 69419570 to 69419908 338 CpG island CpG island 3131
Tssr108688 11 69420328 to 69420353 25 - TSS region transcription start site region 108688
Dnah2 11 69420807 to 69549108 128301 - protein coding gene dynein, axonemal, heavy chain 2
Tssr102473 11 69423335 to 69423338 3 + TSS region transcription start site region 102473
Tssr108689 11 69423862 to 69423867 5 - TSS region transcription start site region 108689
Tssr108690 11 69423884 to 69423892 8 - TSS region transcription start site region 108690
Tssr108691 11 69423908 to 69423911 3 - TSS region transcription start site region 108691
Tssr108692 11 69423928 to 69423953 25 - TSS region transcription start site region 108692
Tssr108693 11 69423971 to 69423977 6 - TSS region transcription start site region 108693
Tssr108694 11 69423991 to 69424012 21 - TSS region transcription start site region 108694
Tssr108695 11 69433105 to 69433114 9 - TSS region transcription start site region 108695
Tssr102474 11 69443643 to 69443648 5 + TSS region transcription start site region 102474
Dnah2os 11 69448548 to 69453676 5128 + antisense lncRNA gene dynein, axonemal, heavy chain 2, opposite strand
Gm27493 11 69505358 to 69505435 77 - miRNA gene predicted gene, 27493
Tssr108696 11 69523224 to 69523228 4 - TSS region transcription start site region 108696
D11Mit298.5 11 69526353 to 69526478 125 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 298.5
D11Mit298 11 69526464 to 69526662 198 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 298