Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:69090972-69153591

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56 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Vamp2 11 69088528 to 69092381 3853 + protein coding gene vesicle-associated membrane protein 2
Tssr102392 11 69090989 to 69091009 20 + TSS region transcription start site region 102392
Tssr102393 11 69091021 to 69091038 17 + TSS region transcription start site region 102393
Tssr102394 11 69091055 to 69091066 11 + TSS region transcription start site region 102394
Tssr102395 11 69091109 to 69091116 7 + TSS region transcription start site region 102395
Tssr102396 11 69091128 to 69091133 5 + TSS region transcription start site region 102396
Tssr102397 11 69091173 to 69091178 5 + TSS region transcription start site region 102397
Tssr3540 11 69091222 to 69091231 9 + TSS region transcription start site region 3540
Tssr102398 11 69091416 to 69091423 7 + TSS region transcription start site region 102398
Tssr102399 11 69091445 to 69091450 5 + TSS region transcription start site region 102399
Tssr3541 11 69091459 to 69091466 7 + TSS region transcription start site region 3541
Tssr102400 11 69091488 to 69091498 10 + TSS region transcription start site region 102400
Tssr102401 11 69091508 to 69091521 13 + TSS region transcription start site region 102401
Cpgi3101 11 69094647 to 69095757 1110 CpG island CpG island 3101
Tssr108622 11 69094715 to 69094726 11 - TSS region transcription start site region 108622
Per1 11 69095217 to 69109960 14743 + protein coding gene period circadian clock 1
Tssr102402 11 69095237 to 69095289 52 + TSS region transcription start site region 102402
Tssr102403 11 69096570 to 69096574 4 + TSS region transcription start site region 102403
Cpgi3102 11 69096962 to 69097272 310 CpG island CpG island 3102
Tssr102404 11 69097222 to 69097253 31 + TSS region transcription start site region 102404
Tssr102405 11 69097731 to 69097744 13 + TSS region transcription start site region 102405
Tssr102406 11 69097762 to 69097773 11 + TSS region transcription start site region 102406
Tssr108623 11 69098168 to 69098207 39 - TSS region transcription start site region 108623
Tssr108624 11 69098588 to 69098629 41 - TSS region transcription start site region 108624
Cpgi3103 11 69098721 to 69099437 716 CpG island CpG island 3103
Tssr102407 11 69098723 to 69098728 5 + TSS region transcription start site region 102407
Tssr108625 11 69098747 to 69098752 5 - TSS region transcription start site region 108625
Tssr102408 11 69098915 to 69098936 21 + TSS region transcription start site region 102408
Tssr102409 11 69098937 to 69098985 48 + TSS region transcription start site region 102409
Tssr102410 11 69099034 to 69099053 19 + TSS region transcription start site region 102410
Cpgi3104 11 69099887 to 69100327 440 CpG island CpG island 3104
Tssr108626 11 69099913 to 69099931 18 - TSS region transcription start site region 108626
Tssr102411 11 69101020 to 69101027 7 + TSS region transcription start site region 102411
Tssr102412 11 69103365 to 69103383 18 + TSS region transcription start site region 102412
Tssr102413 11 69103647 to 69103691 44 + TSS region transcription start site region 102413
n-TTagt5 11 69110465 to 69110538 73 + tRNA gene nuclear encoded tRNA threonine 5 (anticodon AGT)
Cpgi3105 11 69110859 to 69111269 410 CpG island CpG island 3105
n-TScga3 11 69110919 to 69111000 81 + tRNA gene nuclear encoded tRNA serine 14 (anticodon CGA)
Cpgi3106 11 69117749 to 69118305 556 CpG island CpG island 3106
n-TGgcc5 11 69118794 to 69118864 70 - tRNA gene nuclear encoded tRNA glycine 5 (anticodon GCC)
9130213A22Rik 11 69120054 to 69122589 2535 - unclassified gene RIKEN cDNA 9130213A22 gene
Hes7 11 69120404 to 69124055 3651 + protein coding gene hes family bHLH transcription factor 7
Cpgi3107 11 69120972 to 69123591 2619 CpG island CpG island 3107
n-TRtct4 11 69123482 to 69123568 86 - tRNA gene nuclear encoded tRNA arginine 4 (anticodon TCT)
Cpgi3108 11 69124080 to 69124337 257 CpG island CpG island 3108
n-TLtag3 11 69124241 to 69124322 81 + tRNA gene nuclear encoded tRNA leucine 3 (anticodon TAG)
n-TQctg6 11 69124607 to 69124678 71 - tRNA gene nuclear encoded tRNA glutamine 6 (anticodon CTG)
n-TKctt27 11 69125176 to 69125248 72 - tRNA gene nuclear encoded tRNA lysine 27 (anticodon TTT)
Aloxe3 11 69125896 to 69149115 23219 + protein coding gene arachidonate lipoxygenase 3
Tssr102414 11 69126104 to 69126116 12 + TSS region transcription start site region 102414
Tssr102415 11 69126186 to 69126210 24 + TSS region transcription start site region 102415
Tssr102416 11 69126218 to 69126249 31 + TSS region transcription start site region 102416
Cpgi3109 11 69133997 to 69134661 664 CpG island CpG island 3109
Tssr102417 11 69134135 to 69134164 29 + TSS region transcription start site region 102417
Cpgi3110 11 69135001 to 69135233 232 CpG island CpG island 3110
Tssr102418 11 69142562 to 69142566 4 + TSS region transcription start site region 102418