Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:69088932-69292843

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93 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi3100 11 69088118 to 69089651 1533 CpG island CpG island 3100
Vamp2 11 69088528 to 69092381 3853 + protein coding gene vesicle-associated membrane protein 2
Tssr102379 11 69089141 to 69089162 21 + TSS region transcription start site region 102379
Tssr102380 11 69089743 to 69089764 21 + TSS region transcription start site region 102380
Tssr102381 11 69089768 to 69089812 44 + TSS region transcription start site region 102381
Tssr102382 11 69089956 to 69089997 41 + TSS region transcription start site region 102382
Tssr102383 11 69090675 to 69090678 3 + TSS region transcription start site region 102383
Tssr102384 11 69090692 to 69090757 65 + TSS region transcription start site region 102384
Tssr102385 11 69090764 to 69090817 53 + TSS region transcription start site region 102385
Tssr102386 11 69090830 to 69090841 11 + TSS region transcription start site region 102386
Tssr102387 11 69090843 to 69090859 16 + TSS region transcription start site region 102387
Tssr102388 11 69090860 to 69090872 12 + TSS region transcription start site region 102388
Tssr102389 11 69090876 to 69090897 21 + TSS region transcription start site region 102389
Tssr102390 11 69090903 to 69090929 26 + TSS region transcription start site region 102390
Tssr102391 11 69090941 to 69090950 9 + TSS region transcription start site region 102391
Tssr102392 11 69090989 to 69091009 20 + TSS region transcription start site region 102392
Tssr102393 11 69091021 to 69091038 17 + TSS region transcription start site region 102393
Tssr102394 11 69091055 to 69091066 11 + TSS region transcription start site region 102394
Tssr102395 11 69091109 to 69091116 7 + TSS region transcription start site region 102395
Tssr102396 11 69091128 to 69091133 5 + TSS region transcription start site region 102396
Tssr102397 11 69091173 to 69091178 5 + TSS region transcription start site region 102397
Tssr3540 11 69091222 to 69091231 9 + TSS region transcription start site region 3540
Tssr102398 11 69091416 to 69091423 7 + TSS region transcription start site region 102398
Tssr102399 11 69091445 to 69091450 5 + TSS region transcription start site region 102399
Tssr3541 11 69091459 to 69091466 7 + TSS region transcription start site region 3541
Tssr102400 11 69091488 to 69091498 10 + TSS region transcription start site region 102400
Tssr102401 11 69091508 to 69091521 13 + TSS region transcription start site region 102401
Cpgi3101 11 69094647 to 69095757 1110 CpG island CpG island 3101
Tssr108622 11 69094715 to 69094726 11 - TSS region transcription start site region 108622
Per1 11 69095217 to 69109960 14743 + protein coding gene period circadian clock 1
Tssr102402 11 69095237 to 69095289 52 + TSS region transcription start site region 102402
Tssr102403 11 69096570 to 69096574 4 + TSS region transcription start site region 102403
Cpgi3102 11 69096962 to 69097272 310 CpG island CpG island 3102
Tssr102404 11 69097222 to 69097253 31 + TSS region transcription start site region 102404
Tssr102405 11 69097731 to 69097744 13 + TSS region transcription start site region 102405
Tssr102406 11 69097762 to 69097773 11 + TSS region transcription start site region 102406
Tssr108623 11 69098168 to 69098207 39 - TSS region transcription start site region 108623
Tssr108624 11 69098588 to 69098629 41 - TSS region transcription start site region 108624
Cpgi3103 11 69098721 to 69099437 716 CpG island CpG island 3103
Tssr102407 11 69098723 to 69098728 5 + TSS region transcription start site region 102407
Tssr108625 11 69098747 to 69098752 5 - TSS region transcription start site region 108625
Tssr102408 11 69098915 to 69098936 21 + TSS region transcription start site region 102408
Tssr102409 11 69098937 to 69098985 48 + TSS region transcription start site region 102409
Tssr102410 11 69099034 to 69099053 19 + TSS region transcription start site region 102410
Cpgi3104 11 69099887 to 69100327 440 CpG island CpG island 3104
Tssr108626 11 69099913 to 69099931 18 - TSS region transcription start site region 108626
Tssr102411 11 69101020 to 69101027 7 + TSS region transcription start site region 102411
Tssr102412 11 69103365 to 69103383 18 + TSS region transcription start site region 102412
Tssr102413 11 69103647 to 69103691 44 + TSS region transcription start site region 102413
n-TTagt5 11 69110465 to 69110538 73 + tRNA gene nuclear encoded tRNA threonine 5 (anticodon AGT)
Cpgi3105 11 69110859 to 69111269 410 CpG island CpG island 3105
n-TScga3 11 69110919 to 69111000 81 + tRNA gene nuclear encoded tRNA serine 14 (anticodon CGA)
Cpgi3106 11 69117749 to 69118305 556 CpG island CpG island 3106
n-TGgcc5 11 69118794 to 69118864 70 - tRNA gene nuclear encoded tRNA glycine 5 (anticodon GCC)
9130213A22Rik 11 69120054 to 69122589 2535 - unclassified gene RIKEN cDNA 9130213A22 gene
Hes7 11 69120404 to 69124055 3651 + protein coding gene hes family bHLH transcription factor 7
Cpgi3107 11 69120972 to 69123591 2619 CpG island CpG island 3107
n-TRtct4 11 69123482 to 69123568 86 - tRNA gene nuclear encoded tRNA arginine 4 (anticodon TCT)
Cpgi3108 11 69124080 to 69124337 257 CpG island CpG island 3108
n-TLtag3 11 69124241 to 69124322 81 + tRNA gene nuclear encoded tRNA leucine 3 (anticodon TAG)
n-TQctg6 11 69124607 to 69124678 71 - tRNA gene nuclear encoded tRNA glutamine 6 (anticodon CTG)
n-TKctt27 11 69125176 to 69125248 72 - tRNA gene nuclear encoded tRNA lysine 27 (anticodon TTT)
Aloxe3 11 69125896 to 69149115 23219 + protein coding gene arachidonate lipoxygenase 3
Tssr102414 11 69126104 to 69126116 12 + TSS region transcription start site region 102414
Tssr102415 11 69126186 to 69126210 24 + TSS region transcription start site region 102415
Tssr102416 11 69126218 to 69126249 31 + TSS region transcription start site region 102416
Cpgi3109 11 69133997 to 69134661 664 CpG island CpG island 3109
Tssr102417 11 69134135 to 69134164 29 + TSS region transcription start site region 102417
Cpgi3110 11 69135001 to 69135233 232 CpG island CpG island 3110
Tssr102418 11 69142562 to 69142566 4 + TSS region transcription start site region 102418
Tssr102419 11 69156888 to 69156901 13 + TSS region transcription start site region 102419
Tssr102420 11 69156913 to 69156916 3 + TSS region transcription start site region 102420
Cpgi3111 11 69156939 to 69157335 396 CpG island CpG island 3111
Tssr102421 11 69157032 to 69157051 19 + TSS region transcription start site region 102421
Tssr102422 11 69157053 to 69157061 8 + TSS region transcription start site region 102422
Tssr102423 11 69157063 to 69157081 18 + TSS region transcription start site region 102423
Alox12b 11 69157072 to 69169791 12719 + protein coding gene arachidonate 12-lipoxygenase, 12R type
Tssr102424 11 69157084 to 69157110 26 + TSS region transcription start site region 102424
Alox8 11 69183932 to 69197843 13911 - protein coding gene arachidonate 8-lipoxygenase
Cpgi3112 11 69197298 to 69197731 433 CpG island CpG island 3112
Tssr108627 11 69197445 to 69197491 46 - TSS region transcription start site region 108627
Tssr108628 11 69197834 to 69197838 4 - TSS region transcription start site region 108628
Gucy2e 11 69218117 to 69237036 18919 - protein coding gene guanylate cyclase 2e
Cpgi3113 11 69223556 to 69223878 322 CpG island CpG island 3113
Cpgi3114 11 69224133 to 69224341 208 CpG island CpG island 3114
Cpgi3115 11 69227965 to 69228219 254 CpG island CpG island 3115
Cpgi3116 11 69235408 to 69236717 1309 CpG island CpG island 3116
Tssr108629 11 69237029 to 69237044 15 - TSS region transcription start site region 108629
Gm23194 11 69240599 to 69240703 104 + snRNA gene predicted gene, 23194
Gm40039 11 69249929 to 69262080 12151 - lncRNA gene predicted gene, 40039
D11Mit278.2 11 69287543 to 69287657 114 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 278.2
D11Mit278 11 69287607 to 69287720 113 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 278
D11Mit278.1 11 69287723 to 69287869 146 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 278.1