Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:69029454-69089501

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53 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ctc1 11 69015911 to 69036473 20562 + protein coding gene CTS telomere maintenance complex component 1
n-TIaat5 11 69037003 to 69037076 73 + tRNA gene nuclear encoded tRNA isoleucine 5 (anticodon AAT)
Cpgi3092 11 69037071 to 69037478 407 CpG island CpG island 3092
n-TSaga4 11 69037477 to 69037558 81 + tRNA gene nuclear encoded tRNA serine 4 (anticodon AGA)
n-TTagt8 11 69037853 to 69037926 73 + tRNA gene nuclear encoded tRNA threonine 8 (anticodon AGT)
nmf65 11 69039071 to 89076112 20037041 heritable phenotypic marker neuroscience mutagenesis facility, 65
D11Mit368 11 69039071 to 69039189 118 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology-368
Cpgi3093 11 69039885 to 69040844 959 CpG island CpG island 3093
n-TPcgg3 11 69040385 to 69040456 71 + tRNA gene nuclear encoded tRNA proline 3 (anticodon CGG)
n-TDgtc9 11 69040984 to 69041055 71 + tRNA gene nuclear encoded tRNA aspartic acid 9 (anticodon GTC)
n-TGtcc6 11 69041278 to 69041349 71 - tRNA gene nuclear encoded tRNA glycine 6 (anticodon TCC)
Cpgi3094 11 69041633 to 69041912 279 CpG island CpG island 3094
n-TWcca7 11 69041826 to 69041897 71 + tRNA gene nuclear encoded tRNA trytophan 7 (anticodon CCA)
Cpgi3095 11 69045510 to 69046286 776 CpG island CpG island 3095
Tssr102364 11 69045640 to 69045713 73 + TSS region transcription start site region 102364
Aurkb 11 69045647 to 69051664 6017 + protein coding gene aurora kinase B
Tssr102365 11 69045815 to 69045822 7 + TSS region transcription start site region 102365
Tssr102366 11 69045886 to 69045897 11 + TSS region transcription start site region 102366
Tssr102367 11 69045899 to 69045919 20 + TSS region transcription start site region 102367
9330160F10Rik 11 69057718 to 69060483 2765 - antisense lncRNA gene RIKEN cDNA 9330160F10 gene
Tssr102368 11 69058508 to 69058535 27 + TSS region transcription start site region 102368
Cpgi3096 11 69059168 to 69060933 1765 CpG island CpG island 3096
Tssr108617 11 69059424 to 69059443 19 - TSS region transcription start site region 108617
Tssr108618 11 69059454 to 69059501 47 - TSS region transcription start site region 108618
Tssr102369 11 69059708 to 69059745 37 + TSS region transcription start site region 102369
Tssr102370 11 69059750 to 69059809 59 + TSS region transcription start site region 102370
Borcs6 11 69059775 to 69061576 1801 + protein coding gene BLOC-1 related complex subunit 6
Tssr102371 11 69059822 to 69059841 19 + TSS region transcription start site region 102371
Tssr102372 11 69060108 to 69060131 23 + TSS region transcription start site region 102372
Tssr108619 11 69061048 to 69061063 15 - TSS region transcription start site region 108619
n-TIaat4 11 69062320 to 69062393 73 - tRNA gene nuclear encoded tRNA isoleucine 4 (anticodon AAT)
n-TTagt7 11 69062744 to 69062817 73 - tRNA gene nuclear encoded tRNA threonine 7 (anticodon AGT)
Cpgi3097 11 69062905 to 69063495 590 CpG island CpG island 3097
n-TSgct3 11 69063042 to 69063123 81 - tRNA gene nuclear encoded tRNA serine 3 (anticodon GCT)
n-TWcca6 11 69063495 to 69063566 71 - tRNA gene nuclear encoded tRNA trytophan 6 (anticodon CCA)
Cpgi3098 11 69066073 to 69066819 746 CpG island CpG island 3098
Cpgi3099 11 69070286 to 69071272 986 CpG island CpG island 3099
Tssr108620 11 69070696 to 69070721 25 - TSS region transcription start site region 108620
Tssr108621 11 69070725 to 69070757 32 - TSS region transcription start site region 108621
Tssr102373 11 69070790 to 69070856 66 + TSS region transcription start site region 102373
Tmem107 11 69070809 to 69073293 2484 + protein coding gene transmembrane protein 107
Tssr102374 11 69070857 to 69070880 23 + TSS region transcription start site region 102374
Tssr102375 11 69070922 to 69070933 11 + TSS region transcription start site region 102375
Tssr102376 11 69073424 to 69073429 5 + TSS region transcription start site region 102376
Snord118 11 69073427 to 69073561 134 + snoRNA gene small nucleolar RNA, C/D box 118
Gm12306 11 69074490 to 69074660 170 + pseudogene predicted gene 12306
Gm25371 11 69075015 to 69075115 100 + snRNA gene predicted gene, 25371
Cpgi3100 11 69088118 to 69089651 1533 CpG island CpG island 3100
Tssr102377 11 69088482 to 69088493 11 + TSS region transcription start site region 102377
Tssr102378 11 69088515 to 69088553 38 + TSS region transcription start site region 102378
Vamp2 11 69088528 to 69092381 3853 + protein coding gene vesicle-associated membrane protein 2
Tssr3539 11 69088606 to 69088607 1 + TSS region transcription start site region 3539
Tssr102379 11 69089141 to 69089162 21 + TSS region transcription start site region 102379