Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:69027607-69547720

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299 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ctc1 11 69015911 to 69036473 20562 + protein coding gene CTS telomere maintenance complex component 1
Tssr102363 11 69027975 to 69027982 7 + TSS region transcription start site region 102363
n-TIaat5 11 69037003 to 69037076 73 + tRNA gene nuclear encoded tRNA isoleucine 5 (anticodon AAT)
Cpgi3092 11 69037071 to 69037478 407 CpG island CpG island 3092
n-TSaga4 11 69037477 to 69037558 81 + tRNA gene nuclear encoded tRNA serine 4 (anticodon AGA)
n-TTagt8 11 69037853 to 69037926 73 + tRNA gene nuclear encoded tRNA threonine 8 (anticodon AGT)
D11Mit368 11 69039071 to 69039189 118 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology-368
nmf65 11 69039071 to 89076112 20037041 heritable phenotypic marker neuroscience mutagenesis facility, 65
Cpgi3093 11 69039885 to 69040844 959 CpG island CpG island 3093
n-TPcgg3 11 69040385 to 69040456 71 + tRNA gene nuclear encoded tRNA proline 3 (anticodon CGG)
n-TDgtc9 11 69040984 to 69041055 71 + tRNA gene nuclear encoded tRNA aspartic acid 9 (anticodon GTC)
n-TGtcc6 11 69041278 to 69041349 71 - tRNA gene nuclear encoded tRNA glycine 6 (anticodon TCC)
Cpgi3094 11 69041633 to 69041912 279 CpG island CpG island 3094
n-TWcca7 11 69041826 to 69041897 71 + tRNA gene nuclear encoded tRNA trytophan 7 (anticodon CCA)
Cpgi3095 11 69045510 to 69046286 776 CpG island CpG island 3095
Tssr102364 11 69045640 to 69045713 73 + TSS region transcription start site region 102364
Aurkb 11 69045647 to 69051664 6017 + protein coding gene aurora kinase B
Tssr102365 11 69045815 to 69045822 7 + TSS region transcription start site region 102365
Tssr102366 11 69045886 to 69045897 11 + TSS region transcription start site region 102366
Tssr102367 11 69045899 to 69045919 20 + TSS region transcription start site region 102367
9330160F10Rik 11 69057718 to 69060483 2765 - antisense lncRNA gene RIKEN cDNA 9330160F10 gene
Tssr102368 11 69058508 to 69058535 27 + TSS region transcription start site region 102368
Cpgi3096 11 69059168 to 69060933 1765 CpG island CpG island 3096
Tssr108617 11 69059424 to 69059443 19 - TSS region transcription start site region 108617
Tssr108618 11 69059454 to 69059501 47 - TSS region transcription start site region 108618
Tssr102369 11 69059708 to 69059745 37 + TSS region transcription start site region 102369
Tssr102370 11 69059750 to 69059809 59 + TSS region transcription start site region 102370
Borcs6 11 69059775 to 69061576 1801 + protein coding gene BLOC-1 related complex subunit 6
Tssr102371 11 69059822 to 69059841 19 + TSS region transcription start site region 102371
Tssr102372 11 69060108 to 69060131 23 + TSS region transcription start site region 102372
Tssr108619 11 69061048 to 69061063 15 - TSS region transcription start site region 108619
n-TIaat4 11 69062320 to 69062393 73 - tRNA gene nuclear encoded tRNA isoleucine 4 (anticodon AAT)
n-TTagt7 11 69062744 to 69062817 73 - tRNA gene nuclear encoded tRNA threonine 7 (anticodon AGT)
Cpgi3097 11 69062905 to 69063495 590 CpG island CpG island 3097
n-TSgct3 11 69063042 to 69063123 81 - tRNA gene nuclear encoded tRNA serine 3 (anticodon GCT)
n-TWcca6 11 69063495 to 69063566 71 - tRNA gene nuclear encoded tRNA trytophan 6 (anticodon CCA)
Cpgi3098 11 69066073 to 69066819 746 CpG island CpG island 3098
Cpgi3099 11 69070286 to 69071272 986 CpG island CpG island 3099
Tssr108620 11 69070696 to 69070721 25 - TSS region transcription start site region 108620
Tssr108621 11 69070725 to 69070757 32 - TSS region transcription start site region 108621
Tssr102373 11 69070790 to 69070856 66 + TSS region transcription start site region 102373
Tmem107 11 69070809 to 69073293 2484 + protein coding gene transmembrane protein 107
Tssr102374 11 69070857 to 69070880 23 + TSS region transcription start site region 102374
Tssr102375 11 69070922 to 69070933 11 + TSS region transcription start site region 102375
Tssr102376 11 69073424 to 69073429 5 + TSS region transcription start site region 102376
Snord118 11 69073427 to 69073561 134 + snoRNA gene small nucleolar RNA, C/D box 118
Gm12306 11 69074490 to 69074660 170 + pseudogene predicted gene 12306
Gm25371 11 69075015 to 69075115 100 + snRNA gene predicted gene, 25371
Cpgi3100 11 69088118 to 69089651 1533 CpG island CpG island 3100
Tssr102377 11 69088482 to 69088493 11 + TSS region transcription start site region 102377
Tssr102378 11 69088515 to 69088553 38 + TSS region transcription start site region 102378
Vamp2 11 69088528 to 69092381 3853 + protein coding gene vesicle-associated membrane protein 2
Tssr3539 11 69088606 to 69088607 1 + TSS region transcription start site region 3539
Tssr102379 11 69089141 to 69089162 21 + TSS region transcription start site region 102379
Tssr102380 11 69089743 to 69089764 21 + TSS region transcription start site region 102380
Tssr102381 11 69089768 to 69089812 44 + TSS region transcription start site region 102381
Tssr102382 11 69089956 to 69089997 41 + TSS region transcription start site region 102382
Tssr102383 11 69090675 to 69090678 3 + TSS region transcription start site region 102383
Tssr102384 11 69090692 to 69090757 65 + TSS region transcription start site region 102384
Tssr102385 11 69090764 to 69090817 53 + TSS region transcription start site region 102385
Tssr102386 11 69090830 to 69090841 11 + TSS region transcription start site region 102386
Tssr102387 11 69090843 to 69090859 16 + TSS region transcription start site region 102387
Tssr102388 11 69090860 to 69090872 12 + TSS region transcription start site region 102388
Tssr102389 11 69090876 to 69090897 21 + TSS region transcription start site region 102389
Tssr102390 11 69090903 to 69090929 26 + TSS region transcription start site region 102390
Tssr102391 11 69090941 to 69090950 9 + TSS region transcription start site region 102391
Tssr102392 11 69090989 to 69091009 20 + TSS region transcription start site region 102392
Tssr102393 11 69091021 to 69091038 17 + TSS region transcription start site region 102393
Tssr102394 11 69091055 to 69091066 11 + TSS region transcription start site region 102394
Tssr102395 11 69091109 to 69091116 7 + TSS region transcription start site region 102395
Tssr102396 11 69091128 to 69091133 5 + TSS region transcription start site region 102396
Tssr102397 11 69091173 to 69091178 5 + TSS region transcription start site region 102397
Tssr3540 11 69091222 to 69091231 9 + TSS region transcription start site region 3540
Tssr102398 11 69091416 to 69091423 7 + TSS region transcription start site region 102398
Tssr102399 11 69091445 to 69091450 5 + TSS region transcription start site region 102399
Tssr3541 11 69091459 to 69091466 7 + TSS region transcription start site region 3541
Tssr102400 11 69091488 to 69091498 10 + TSS region transcription start site region 102400
Tssr102401 11 69091508 to 69091521 13 + TSS region transcription start site region 102401
Cpgi3101 11 69094647 to 69095757 1110 CpG island CpG island 3101
Tssr108622 11 69094715 to 69094726 11 - TSS region transcription start site region 108622
Per1 11 69095217 to 69109960 14743 + protein coding gene period circadian clock 1
Tssr102402 11 69095237 to 69095289 52 + TSS region transcription start site region 102402
Tssr102403 11 69096570 to 69096574 4 + TSS region transcription start site region 102403
Cpgi3102 11 69096962 to 69097272 310 CpG island CpG island 3102
Tssr102404 11 69097222 to 69097253 31 + TSS region transcription start site region 102404
Tssr102405 11 69097731 to 69097744 13 + TSS region transcription start site region 102405
Tssr102406 11 69097762 to 69097773 11 + TSS region transcription start site region 102406
Tssr108623 11 69098168 to 69098207 39 - TSS region transcription start site region 108623
Tssr108624 11 69098588 to 69098629 41 - TSS region transcription start site region 108624
Cpgi3103 11 69098721 to 69099437 716 CpG island CpG island 3103
Tssr102407 11 69098723 to 69098728 5 + TSS region transcription start site region 102407
Tssr108625 11 69098747 to 69098752 5 - TSS region transcription start site region 108625
Tssr102408 11 69098915 to 69098936 21 + TSS region transcription start site region 102408
Tssr102409 11 69098937 to 69098985 48 + TSS region transcription start site region 102409
Tssr102410 11 69099034 to 69099053 19 + TSS region transcription start site region 102410
Cpgi3104 11 69099887 to 69100327 440 CpG island CpG island 3104
Tssr108626 11 69099913 to 69099931 18 - TSS region transcription start site region 108626
Tssr102411 11 69101020 to 69101027 7 + TSS region transcription start site region 102411
Tssr102412 11 69103365 to 69103383 18 + TSS region transcription start site region 102412
Tssr102413 11 69103647 to 69103691 44 + TSS region transcription start site region 102413
n-TTagt5 11 69110465 to 69110538 73 + tRNA gene nuclear encoded tRNA threonine 5 (anticodon AGT)
Cpgi3105 11 69110859 to 69111269 410 CpG island CpG island 3105
n-TScga3 11 69110919 to 69111000 81 + tRNA gene nuclear encoded tRNA serine 14 (anticodon CGA)
Cpgi3106 11 69117749 to 69118305 556 CpG island CpG island 3106
n-TGgcc5 11 69118794 to 69118864 70 - tRNA gene nuclear encoded tRNA glycine 5 (anticodon GCC)
9130213A22Rik 11 69120054 to 69122589 2535 - unclassified gene RIKEN cDNA 9130213A22 gene
Hes7 11 69120404 to 69124055 3651 + protein coding gene hes family bHLH transcription factor 7
Cpgi3107 11 69120972 to 69123591 2619 CpG island CpG island 3107
n-TRtct4 11 69123482 to 69123568 86 - tRNA gene nuclear encoded tRNA arginine 4 (anticodon TCT)
Cpgi3108 11 69124080 to 69124337 257 CpG island CpG island 3108
n-TLtag3 11 69124241 to 69124322 81 + tRNA gene nuclear encoded tRNA leucine 3 (anticodon TAG)
n-TQctg6 11 69124607 to 69124678 71 - tRNA gene nuclear encoded tRNA glutamine 6 (anticodon CTG)
n-TKctt27 11 69125176 to 69125248 72 - tRNA gene nuclear encoded tRNA lysine 27 (anticodon TTT)
Aloxe3 11 69125896 to 69149115 23219 + protein coding gene arachidonate lipoxygenase 3
Tssr102414 11 69126104 to 69126116 12 + TSS region transcription start site region 102414
Tssr102415 11 69126186 to 69126210 24 + TSS region transcription start site region 102415
Tssr102416 11 69126218 to 69126249 31 + TSS region transcription start site region 102416
Cpgi3109 11 69133997 to 69134661 664 CpG island CpG island 3109
Tssr102417 11 69134135 to 69134164 29 + TSS region transcription start site region 102417
Cpgi3110 11 69135001 to 69135233 232 CpG island CpG island 3110
Tssr102418 11 69142562 to 69142566 4 + TSS region transcription start site region 102418
Tssr102419 11 69156888 to 69156901 13 + TSS region transcription start site region 102419
Tssr102420 11 69156913 to 69156916 3 + TSS region transcription start site region 102420
Cpgi3111 11 69156939 to 69157335 396 CpG island CpG island 3111
Tssr102421 11 69157032 to 69157051 19 + TSS region transcription start site region 102421
Tssr102422 11 69157053 to 69157061 8 + TSS region transcription start site region 102422
Tssr102423 11 69157063 to 69157081 18 + TSS region transcription start site region 102423
Alox12b 11 69157072 to 69169791 12719 + protein coding gene arachidonate 12-lipoxygenase, 12R type
Tssr102424 11 69157084 to 69157110 26 + TSS region transcription start site region 102424
Alox8 11 69183932 to 69197843 13911 - protein coding gene arachidonate 8-lipoxygenase
Cpgi3112 11 69197298 to 69197731 433 CpG island CpG island 3112
Tssr108627 11 69197445 to 69197491 46 - TSS region transcription start site region 108627
Tssr108628 11 69197834 to 69197838 4 - TSS region transcription start site region 108628
Gucy2e 11 69218117 to 69237036 18919 - protein coding gene guanylate cyclase 2e
Cpgi3113 11 69223556 to 69223878 322 CpG island CpG island 3113
Cpgi3114 11 69224133 to 69224341 208 CpG island CpG island 3114
Cpgi3115 11 69227965 to 69228219 254 CpG island CpG island 3115
Cpgi3116 11 69235408 to 69236717 1309 CpG island CpG island 3116
Tssr108629 11 69237029 to 69237044 15 - TSS region transcription start site region 108629
Gm23194 11 69240599 to 69240703 104 + snRNA gene predicted gene, 23194
Gm40039 11 69249929 to 69262080 12151 - lncRNA gene predicted gene, 40039
D11Mit278.2 11 69287543 to 69287657 114 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 278.2
D11Mit278 11 69287607 to 69287720 113 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 278
D11Mit278.1 11 69287723 to 69287869 146 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 278.1
Cntrobos 11 69294151 to 69295477 1326 + antisense lncRNA gene centrobin, centrosomal BRCA2 interacting protein, opposite strand
Cntrob 11 69299487 to 69323775 24288 - protein coding gene centrobin, centrosomal BRCA2 interacting protein
Cpgi3117 11 69323550 to 69324103 553 CpG island CpG island 3117
Tssr108630 11 69323736 to 69323765 29 - TSS region transcription start site region 108630
Tssr108631 11 69323768 to 69323832 64 - TSS region transcription start site region 108631
Tssr102425 11 69323963 to 69324043 80 + TSS region transcription start site region 102425
Trappc1 11 69323986 to 69325793 1807 + protein coding gene trafficking protein particle complex 1
Tssr102426 11 69324055 to 69324065 10 + TSS region transcription start site region 102426
Tssr102427 11 69324069 to 69324111 42 + TSS region transcription start site region 102427
Tssr102428 11 69324145 to 69324156 11 + TSS region transcription start site region 102428
Tssr102429 11 69325559 to 69325584 25 + TSS region transcription start site region 102429
Cpgi3118 11 69326076 to 69326909 833 CpG island CpG island 3118
Tssr102430 11 69326252 to 69326275 23 + TSS region transcription start site region 102430
Kcnab3 11 69326258 to 69333042 6784 + protein coding gene potassium voltage-gated channel, shaker-related subfamily, beta member 3
Tssr102431 11 69326284 to 69326314 30 + TSS region transcription start site region 102431
Tssr102432 11 69326317 to 69326339 22 + TSS region transcription start site region 102432
Tssr102433 11 69326346 to 69326355 9 + TSS region transcription start site region 102433
Tssr102434 11 69326668 to 69326681 13 + TSS region transcription start site region 102434
Tssr102435 11 69326696 to 69326716 20 + TSS region transcription start site region 102435
Tssr102436 11 69327860 to 69327868 8 + TSS region transcription start site region 102436
Kcnab3os 11 69329825 to 69332122 2297 - antisense lncRNA gene potassium voltage-gated channel, shaker-related subfamily, beta member 3, opposite strand
Tssr102437 11 69331365 to 69331373 8 + TSS region transcription start site region 102437
Tssr102438 11 69331437 to 69331451 14 + TSS region transcription start site region 102438
Cpgi3119 11 69331996 to 69332478 482 CpG island CpG island 3119
Tssr108632 11 69332091 to 69332100 9 - TSS region transcription start site region 108632
Tssr108633 11 69332106 to 69332128 22 - TSS region transcription start site region 108633
Cpgi3120 11 69339952 to 69341401 1449 CpG island CpG island 3120
Tssr102439 11 69339987 to 69339989 2 + TSS region transcription start site region 102439
Tssr102440 11 69340448 to 69340457 9 + TSS region transcription start site region 102440
Tssr102441 11 69340751 to 69340756 5 + TSS region transcription start site region 102441
Tssr102442 11 69340763 to 69340838 75 + TSS region transcription start site region 102442
Rnf227 11 69340769 to 69342647 1878 + protein coding gene ring finger protein 227
Chd3 11 69343273 to 69369406 26133 - protein coding gene chromodomain helicase DNA binding protein 3
Gm22442 11 69350518 to 69350661 143 - snoRNA gene predicted gene, 22442
Tssr108634 11 69350715 to 69350719 4 - TSS region transcription start site region 108634
Tssr102443 11 69360625 to 69360673 48 + TSS region transcription start site region 102443
Tssr102444 11 69364010 to 69364041 31 + TSS region transcription start site region 102444
Tssr108635 11 69364496 to 69364510 14 - TSS region transcription start site region 108635
Tssr108636 11 69364930 to 69364983 53 - TSS region transcription start site region 108636
Cpgi3121 11 69366065 to 69366370 305 CpG island CpG island 3121
Tssr108637 11 69366459 to 69366470 11 - TSS region transcription start site region 108637
Tssr108638 11 69368050 to 69368093 43 - TSS region transcription start site region 108638
Cpgi3122 11 69368074 to 69369549 1475 CpG island CpG island 3122
Tssr102445 11 69368289 to 69368300 11 + TSS region transcription start site region 102445
Tssr102446 11 69368316 to 69368326 10 + TSS region transcription start site region 102446
Tssr102447 11 69368332 to 69368348 16 + TSS region transcription start site region 102447
Tssr3542 11 69368850 to 69368874 24 + TSS region transcription start site region 3542
Tssr102448 11 69368878 to 69368901 23 + TSS region transcription start site region 102448
Tssr108639 11 69369236 to 69369247 11 - TSS region transcription start site region 108639
Tssr108640 11 69369346 to 69369366 20 - TSS region transcription start site region 108640
Tssr108641 11 69369377 to 69369415 38 - TSS region transcription start site region 108641
Gm32483 11 69369559 to 69374316 4757 + lncRNA gene predicted gene, 32483
Tssr108642 11 69369682 to 69369706 24 - TSS region transcription start site region 108642
Tssr108643 11 69369799 to 69369853 54 - TSS region transcription start site region 108643
Tssr108644 11 69370150 to 69370182 32 - TSS region transcription start site region 108644
Tssr102449 11 69373754 to 69373796 42 + TSS region transcription start site region 102449