Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:69025647-69071664

50 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Ctc1	11	69015911 to 69036473	20562	+	protein coding gene	CTS telomere maintenance complex component 1
Tssr102357	11	69026043 to 69026055	12	+	TSS region	transcription start site region 102357
Tssr102358	11	69026066 to 69026085	19	+	TSS region	transcription start site region 102358
Tssr102359	11	69026824 to 69026834	10	+	TSS region	transcription start site region 102359
Tssr102360	11	69027088 to 69027123	35	+	TSS region	transcription start site region 102360
Tssr102361	11	69027294 to 69027336	42	+	TSS region	transcription start site region 102361
Tssr102362	11	69027340 to 69027359	19	+	TSS region	transcription start site region 102362
Tssr102363	11	69027975 to 69027982	7	+	TSS region	transcription start site region 102363
n-TIaat5	11	69037003 to 69037076	73	+	tRNA gene	nuclear encoded tRNA isoleucine 5 (anticodon AAT)
Cpgi3092	11	69037071 to 69037478	407		CpG island	CpG island 3092
n-TSaga4	11	69037477 to 69037558	81	+	tRNA gene	nuclear encoded tRNA serine 4 (anticodon AGA)
n-TTagt8	11	69037853 to 69037926	73	+	tRNA gene	nuclear encoded tRNA threonine 8 (anticodon AGT)
nmf65	11	69039071 to 89076112	20037041		heritable phenotypic marker	neuroscience mutagenesis facility, 65
D11Mit368	11	69039071 to 69039189	118		DNA segment	DNA Segment, Chr 11, Massachusetts Institute of Technology-368
Cpgi3093	11	69039885 to 69040844	959		CpG island	CpG island 3093
n-TPcgg3	11	69040385 to 69040456	71	+	tRNA gene	nuclear encoded tRNA proline 3 (anticodon CGG)
n-TDgtc9	11	69040984 to 69041055	71	+	tRNA gene	nuclear encoded tRNA aspartic acid 9 (anticodon GTC)
n-TGtcc6	11	69041278 to 69041349	71	-	tRNA gene	nuclear encoded tRNA glycine 6 (anticodon TCC)
Cpgi3094	11	69041633 to 69041912	279		CpG island	CpG island 3094
n-TWcca7	11	69041826 to 69041897	71	+	tRNA gene	nuclear encoded tRNA trytophan 7 (anticodon CCA)
Cpgi3095	11	69045510 to 69046286	776		CpG island	CpG island 3095
Tssr102364	11	69045640 to 69045713	73	+	TSS region	transcription start site region 102364
Aurkb	11	69045647 to 69051664	6017	+	protein coding gene	aurora kinase B
Tssr102365	11	69045815 to 69045822	7	+	TSS region	transcription start site region 102365
Tssr102366	11	69045886 to 69045897	11	+	TSS region	transcription start site region 102366
Tssr102367	11	69045899 to 69045919	20	+	TSS region	transcription start site region 102367
9330160F10Rik	11	69057718 to 69060483	2765	-	antisense lncRNA gene	RIKEN cDNA 9330160F10 gene
Tssr102368	11	69058508 to 69058535	27	+	TSS region	transcription start site region 102368
Cpgi3096	11	69059168 to 69060933	1765		CpG island	CpG island 3096
Tssr108617	11	69059424 to 69059443	19	-	TSS region	transcription start site region 108617
Tssr108618	11	69059454 to 69059501	47	-	TSS region	transcription start site region 108618
Tssr102369	11	69059708 to 69059745	37	+	TSS region	transcription start site region 102369
Tssr102370	11	69059750 to 69059809	59	+	TSS region	transcription start site region 102370
Borcs6	11	69059775 to 69061576	1801	+	protein coding gene	BLOC-1 related complex subunit 6
Tssr102371	11	69059822 to 69059841	19	+	TSS region	transcription start site region 102371
Tssr102372	11	69060108 to 69060131	23	+	TSS region	transcription start site region 102372
Tssr108619	11	69061048 to 69061063	15	-	TSS region	transcription start site region 108619
n-TIaat4	11	69062320 to 69062393	73	-	tRNA gene	nuclear encoded tRNA isoleucine 4 (anticodon AAT)
n-TTagt7	11	69062744 to 69062817	73	-	tRNA gene	nuclear encoded tRNA threonine 7 (anticodon AGT)
Cpgi3097	11	69062905 to 69063495	590		CpG island	CpG island 3097
n-TSgct3	11	69063042 to 69063123	81	-	tRNA gene	nuclear encoded tRNA serine 3 (anticodon GCT)
n-TWcca6	11	69063495 to 69063566	71	-	tRNA gene	nuclear encoded tRNA trytophan 6 (anticodon CCA)
Cpgi3098	11	69066073 to 69066819	746		CpG island	CpG island 3098
Cpgi3099	11	69070286 to 69071272	986		CpG island	CpG island 3099
Tssr108620	11	69070696 to 69070721	25	-	TSS region	transcription start site region 108620
Tssr108621	11	69070725 to 69070757	32	-	TSS region	transcription start site region 108621
Tssr102373	11	69070790 to 69070856	66	+	TSS region	transcription start site region 102373
Tmem107	11	69070809 to 69073293	2484	+	protein coding gene	transmembrane protein 107
Tssr102374	11	69070857 to 69070880	23	+	TSS region	transcription start site region 102374
Tssr102375	11	69070922 to 69070933	11	+	TSS region	transcription start site region 102375