Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:69000815-69090822

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75 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pfas 11 68985701 to 69008460 22759 - protein coding gene phosphoribosylformylglycinamidine synthase (FGAR amidotransferase)
Cpgi3090 11 69008202 to 69008715 513 CpG island CpG island 3090
Tssr108613 11 69008422 to 69008477 55 - TSS region transcription start site region 108613
Tssr108614 11 69011972 to 69011996 24 - TSS region transcription start site region 108614
Tssr108615 11 69012447 to 69012458 11 - TSS region transcription start site region 108615
Tssr108616 11 69012463 to 69012500 37 - TSS region transcription start site region 108616
Cpgi3091 11 69015772 to 69016376 604 CpG island CpG island 3091
Ctc1 11 69015911 to 69036473 20562 + protein coding gene CTS telomere maintenance complex component 1
Tssr102355 11 69016073 to 69016135 62 + TSS region transcription start site region 102355
Tssr102356 11 69020905 to 69020908 3 + TSS region transcription start site region 102356
Tssr102357 11 69026043 to 69026055 12 + TSS region transcription start site region 102357
Tssr102358 11 69026066 to 69026085 19 + TSS region transcription start site region 102358
Tssr102359 11 69026824 to 69026834 10 + TSS region transcription start site region 102359
Tssr102360 11 69027088 to 69027123 35 + TSS region transcription start site region 102360
Tssr102361 11 69027294 to 69027336 42 + TSS region transcription start site region 102361
Tssr102362 11 69027340 to 69027359 19 + TSS region transcription start site region 102362
Tssr102363 11 69027975 to 69027982 7 + TSS region transcription start site region 102363
n-TIaat5 11 69037003 to 69037076 73 + tRNA gene nuclear encoded tRNA isoleucine 5 (anticodon AAT)
Cpgi3092 11 69037071 to 69037478 407 CpG island CpG island 3092
n-TSaga4 11 69037477 to 69037558 81 + tRNA gene nuclear encoded tRNA serine 4 (anticodon AGA)
n-TTagt8 11 69037853 to 69037926 73 + tRNA gene nuclear encoded tRNA threonine 8 (anticodon AGT)
D11Mit368 11 69039071 to 69039189 118 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology-368
nmf65 11 69039071 to 89076112 20037041 heritable phenotypic marker neuroscience mutagenesis facility, 65
Cpgi3093 11 69039885 to 69040844 959 CpG island CpG island 3093
n-TPcgg3 11 69040385 to 69040456 71 + tRNA gene nuclear encoded tRNA proline 3 (anticodon CGG)
n-TDgtc9 11 69040984 to 69041055 71 + tRNA gene nuclear encoded tRNA aspartic acid 9 (anticodon GTC)
n-TGtcc6 11 69041278 to 69041349 71 - tRNA gene nuclear encoded tRNA glycine 6 (anticodon TCC)
Cpgi3094 11 69041633 to 69041912 279 CpG island CpG island 3094
n-TWcca7 11 69041826 to 69041897 71 + tRNA gene nuclear encoded tRNA trytophan 7 (anticodon CCA)
Cpgi3095 11 69045510 to 69046286 776 CpG island CpG island 3095
Tssr102364 11 69045640 to 69045713 73 + TSS region transcription start site region 102364
Aurkb 11 69045647 to 69051664 6017 + protein coding gene aurora kinase B
Tssr102365 11 69045815 to 69045822 7 + TSS region transcription start site region 102365
Tssr102366 11 69045886 to 69045897 11 + TSS region transcription start site region 102366
Tssr102367 11 69045899 to 69045919 20 + TSS region transcription start site region 102367
9330160F10Rik 11 69057718 to 69060483 2765 - antisense lncRNA gene RIKEN cDNA 9330160F10 gene
Tssr102368 11 69058508 to 69058535 27 + TSS region transcription start site region 102368
Cpgi3096 11 69059168 to 69060933 1765 CpG island CpG island 3096
Tssr108617 11 69059424 to 69059443 19 - TSS region transcription start site region 108617
Tssr108618 11 69059454 to 69059501 47 - TSS region transcription start site region 108618
Tssr102369 11 69059708 to 69059745 37 + TSS region transcription start site region 102369
Tssr102370 11 69059750 to 69059809 59 + TSS region transcription start site region 102370
Borcs6 11 69059775 to 69061576 1801 + protein coding gene BLOC-1 related complex subunit 6
Tssr102371 11 69059822 to 69059841 19 + TSS region transcription start site region 102371
Tssr102372 11 69060108 to 69060131 23 + TSS region transcription start site region 102372
Tssr108619 11 69061048 to 69061063 15 - TSS region transcription start site region 108619
n-TIaat4 11 69062320 to 69062393 73 - tRNA gene nuclear encoded tRNA isoleucine 4 (anticodon AAT)
n-TTagt7 11 69062744 to 69062817 73 - tRNA gene nuclear encoded tRNA threonine 7 (anticodon AGT)
Cpgi3097 11 69062905 to 69063495 590 CpG island CpG island 3097
n-TSgct3 11 69063042 to 69063123 81 - tRNA gene nuclear encoded tRNA serine 3 (anticodon GCT)
n-TWcca6 11 69063495 to 69063566 71 - tRNA gene nuclear encoded tRNA trytophan 6 (anticodon CCA)
Cpgi3098 11 69066073 to 69066819 746 CpG island CpG island 3098
Cpgi3099 11 69070286 to 69071272 986 CpG island CpG island 3099
Tssr108620 11 69070696 to 69070721 25 - TSS region transcription start site region 108620
Tssr108621 11 69070725 to 69070757 32 - TSS region transcription start site region 108621
Tssr102373 11 69070790 to 69070856 66 + TSS region transcription start site region 102373
Tmem107 11 69070809 to 69073293 2484 + protein coding gene transmembrane protein 107
Tssr102374 11 69070857 to 69070880 23 + TSS region transcription start site region 102374
Tssr102375 11 69070922 to 69070933 11 + TSS region transcription start site region 102375
Tssr102376 11 69073424 to 69073429 5 + TSS region transcription start site region 102376
Snord118 11 69073427 to 69073561 134 + snoRNA gene small nucleolar RNA, C/D box 118
Gm12306 11 69074490 to 69074660 170 + pseudogene predicted gene 12306
Gm25371 11 69075015 to 69075115 100 + snRNA gene predicted gene, 25371
Cpgi3100 11 69088118 to 69089651 1533 CpG island CpG island 3100
Tssr102377 11 69088482 to 69088493 11 + TSS region transcription start site region 102377
Tssr102378 11 69088515 to 69088553 38 + TSS region transcription start site region 102378
Vamp2 11 69088528 to 69092381 3853 + protein coding gene vesicle-associated membrane protein 2
Tssr3539 11 69088606 to 69088607 1 + TSS region transcription start site region 3539
Tssr102379 11 69089141 to 69089162 21 + TSS region transcription start site region 102379
Tssr102380 11 69089743 to 69089764 21 + TSS region transcription start site region 102380
Tssr102381 11 69089768 to 69089812 44 + TSS region transcription start site region 102381
Tssr102382 11 69089956 to 69089997 41 + TSS region transcription start site region 102382
Tssr102383 11 69090675 to 69090678 3 + TSS region transcription start site region 102383
Tssr102384 11 69090692 to 69090757 65 + TSS region transcription start site region 102384
Tssr102385 11 69090764 to 69090817 53 + TSS region transcription start site region 102385