Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:68876491-69006736

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42 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr102344 11 68888517 to 68888523 6 + TSS region transcription start site region 102344
Tssr102345 11 68888545 to 68888562 17 + TSS region transcription start site region 102345
Rnf222 11 68888553 to 68895777 7224 + protein coding gene ring finger protein 222
Tssr102346 11 68888578 to 68888588 10 + TSS region transcription start site region 102346
Tssr102347 11 68888594 to 68888605 11 + TSS region transcription start site region 102347
Cpgi3083 11 68892615 to 68893214 599 CpG island CpG island 3083
Cpgi3084 11 68901064 to 68901962 898 CpG island CpG island 3084
Tssr102348 11 68901517 to 68901529 12 + TSS region transcription start site region 102348
Tssr102349 11 68901538 to 68901633 95 + TSS region transcription start site region 102349
Rpl26 11 68901566 to 68904534 2968 + protein coding gene ribosomal protein L26
Tssr102350 11 68901643 to 68901657 14 + TSS region transcription start site region 102350
Gm22608 11 68908020 to 68908122 102 + snRNA gene predicted gene, 22608
Odf4 11 68921835 to 68927081 5246 - protein coding gene outer dense fiber of sperm tails 4
Tssr108602 11 68927061 to 68927101 40 - TSS region transcription start site region 108602
Tssr108603 11 68930060 to 68930071 11 - TSS region transcription start site region 108603
D11Ertd518e 11 68941491 to 68941736 245 DNA segment DNA segment, Chr 11, ERATO Doi 518, expressed
Arhgef15 11 68943155 to 68957480 14325 - protein coding gene Rho guanine nucleotide exchange factor (GEF) 15
Cpgi3085 11 68947298 to 68947585 287 CpG island CpG island 3085
Tssr108604 11 68947373 to 68947412 39 - TSS region transcription start site region 108604
Tssr108605 11 68947540 to 68947574 34 - TSS region transcription start site region 108605
Cpgi3086 11 68954379 to 68954686 307 CpG island CpG island 3086
Tssr108606 11 68956195 to 68956229 34 - TSS region transcription start site region 108606
Tssr108607 11 68956873 to 68956909 36 - TSS region transcription start site region 108607
Gm32273 11 68956946 to 68962325 5379 + lncRNA gene predicted gene, 32273
Tssr102351 11 68956975 to 68956994 19 + TSS region transcription start site region 102351
Tssr108608 11 68957445 to 68957485 40 - TSS region transcription start site region 108608
Slc25a35 11 68967607 to 68972516 4909 + protein coding gene solute carrier family 25, member 35
Tssr102352 11 68967641 to 68967652 11 + TSS region transcription start site region 102352
Cpgi3087 11 68967662 to 68968304 642 CpG island CpG island 3087
Tssr102353 11 68968107 to 68968175 68 + TSS region transcription start site region 102353
Tssr102354 11 68968179 to 68968186 7 + TSS region transcription start site region 102354
Rangrf 11 68972484 to 68975185 2701 - protein coding gene RAN guanine nucleotide release factor
Tssr108609 11 68973278 to 68973292 14 - TSS region transcription start site region 108609
Cpgi3088 11 68973300 to 68974028 728 CpG island CpG island 3088
Tssr108610 11 68973332 to 68973353 21 - TSS region transcription start site region 108610
Tssr108611 11 68973364 to 68973382 18 - TSS region transcription start site region 108611
Tssr108612 11 68973840 to 68973864 24 - TSS region transcription start site region 108612
Gm32384 11 68977004 to 68983568 6564 - lncRNA gene predicted gene, 32384
Pfas 11 68985701 to 69008460 22759 - protein coding gene phosphoribosylformylglycinamidine synthase (FGAR amidotransferase)
Cpgi3089 11 68988277 to 68988647 370 CpG island CpG island 3089
Mir3062 11 68990574 to 68990678 104 - miRNA gene microRNA 3062
Gm25819 11 68996002 to 68996085 83 + snRNA gene predicted gene, 25819