Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:68873840-69073864

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102 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr102344 11 68888517 to 68888523 6 + TSS region transcription start site region 102344
Tssr102345 11 68888545 to 68888562 17 + TSS region transcription start site region 102345
Rnf222 11 68888553 to 68895777 7224 + protein coding gene ring finger protein 222
Tssr102346 11 68888578 to 68888588 10 + TSS region transcription start site region 102346
Tssr102347 11 68888594 to 68888605 11 + TSS region transcription start site region 102347
Cpgi3083 11 68892615 to 68893214 599 CpG island CpG island 3083
Cpgi3084 11 68901064 to 68901962 898 CpG island CpG island 3084
Tssr102348 11 68901517 to 68901529 12 + TSS region transcription start site region 102348
Tssr102349 11 68901538 to 68901633 95 + TSS region transcription start site region 102349
Rpl26 11 68901566 to 68904534 2968 + protein coding gene ribosomal protein L26
Tssr102350 11 68901643 to 68901657 14 + TSS region transcription start site region 102350
Gm22608 11 68908020 to 68908122 102 + snRNA gene predicted gene, 22608
Odf4 11 68921835 to 68927081 5246 - protein coding gene outer dense fiber of sperm tails 4
Tssr108602 11 68927061 to 68927101 40 - TSS region transcription start site region 108602
Tssr108603 11 68930060 to 68930071 11 - TSS region transcription start site region 108603
D11Ertd518e 11 68941491 to 68941736 245 DNA segment DNA segment, Chr 11, ERATO Doi 518, expressed
Arhgef15 11 68943155 to 68957480 14325 - protein coding gene Rho guanine nucleotide exchange factor (GEF) 15
Cpgi3085 11 68947298 to 68947585 287 CpG island CpG island 3085
Tssr108604 11 68947373 to 68947412 39 - TSS region transcription start site region 108604
Tssr108605 11 68947540 to 68947574 34 - TSS region transcription start site region 108605
Cpgi3086 11 68954379 to 68954686 307 CpG island CpG island 3086
Tssr108606 11 68956195 to 68956229 34 - TSS region transcription start site region 108606
Tssr108607 11 68956873 to 68956909 36 - TSS region transcription start site region 108607
Gm32273 11 68956946 to 68962325 5379 + lncRNA gene predicted gene, 32273
Tssr102351 11 68956975 to 68956994 19 + TSS region transcription start site region 102351
Tssr108608 11 68957445 to 68957485 40 - TSS region transcription start site region 108608
Slc25a35 11 68967607 to 68972516 4909 + protein coding gene solute carrier family 25, member 35
Tssr102352 11 68967641 to 68967652 11 + TSS region transcription start site region 102352
Cpgi3087 11 68967662 to 68968304 642 CpG island CpG island 3087
Tssr102353 11 68968107 to 68968175 68 + TSS region transcription start site region 102353
Tssr102354 11 68968179 to 68968186 7 + TSS region transcription start site region 102354
Rangrf 11 68972484 to 68975185 2701 - protein coding gene RAN guanine nucleotide release factor
Tssr108609 11 68973278 to 68973292 14 - TSS region transcription start site region 108609
Cpgi3088 11 68973300 to 68974028 728 CpG island CpG island 3088
Tssr108610 11 68973332 to 68973353 21 - TSS region transcription start site region 108610
Tssr108611 11 68973364 to 68973382 18 - TSS region transcription start site region 108611
Tssr108612 11 68973840 to 68973864 24 - TSS region transcription start site region 108612
Gm32384 11 68977004 to 68983568 6564 - lncRNA gene predicted gene, 32384
Pfas 11 68985701 to 69008460 22759 - protein coding gene phosphoribosylformylglycinamidine synthase (FGAR amidotransferase)
Cpgi3089 11 68988277 to 68988647 370 CpG island CpG island 3089
Mir3062 11 68990574 to 68990678 104 - miRNA gene microRNA 3062
Gm25819 11 68996002 to 68996085 83 + snRNA gene predicted gene, 25819
Cpgi3090 11 69008202 to 69008715 513 CpG island CpG island 3090
Tssr108613 11 69008422 to 69008477 55 - TSS region transcription start site region 108613
Tssr108614 11 69011972 to 69011996 24 - TSS region transcription start site region 108614
Tssr108615 11 69012447 to 69012458 11 - TSS region transcription start site region 108615
Tssr108616 11 69012463 to 69012500 37 - TSS region transcription start site region 108616
Cpgi3091 11 69015772 to 69016376 604 CpG island CpG island 3091
Ctc1 11 69015911 to 69036473 20562 + protein coding gene CTS telomere maintenance complex component 1
Tssr102355 11 69016073 to 69016135 62 + TSS region transcription start site region 102355
Tssr102356 11 69020905 to 69020908 3 + TSS region transcription start site region 102356
Tssr102357 11 69026043 to 69026055 12 + TSS region transcription start site region 102357
Tssr102358 11 69026066 to 69026085 19 + TSS region transcription start site region 102358
Tssr102359 11 69026824 to 69026834 10 + TSS region transcription start site region 102359
Tssr102360 11 69027088 to 69027123 35 + TSS region transcription start site region 102360
Tssr102361 11 69027294 to 69027336 42 + TSS region transcription start site region 102361
Tssr102362 11 69027340 to 69027359 19 + TSS region transcription start site region 102362
Tssr102363 11 69027975 to 69027982 7 + TSS region transcription start site region 102363
n-TIaat5 11 69037003 to 69037076 73 + tRNA gene nuclear encoded tRNA isoleucine 5 (anticodon AAT)
Cpgi3092 11 69037071 to 69037478 407 CpG island CpG island 3092
n-TSaga4 11 69037477 to 69037558 81 + tRNA gene nuclear encoded tRNA serine 4 (anticodon AGA)
n-TTagt8 11 69037853 to 69037926 73 + tRNA gene nuclear encoded tRNA threonine 8 (anticodon AGT)
nmf65 11 69039071 to 89076112 20037041 heritable phenotypic marker neuroscience mutagenesis facility, 65
D11Mit368 11 69039071 to 69039189 118 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology-368
Cpgi3093 11 69039885 to 69040844 959 CpG island CpG island 3093
n-TPcgg3 11 69040385 to 69040456 71 + tRNA gene nuclear encoded tRNA proline 3 (anticodon CGG)
n-TDgtc9 11 69040984 to 69041055 71 + tRNA gene nuclear encoded tRNA aspartic acid 9 (anticodon GTC)
n-TGtcc6 11 69041278 to 69041349 71 - tRNA gene nuclear encoded tRNA glycine 6 (anticodon TCC)
Cpgi3094 11 69041633 to 69041912 279 CpG island CpG island 3094
n-TWcca7 11 69041826 to 69041897 71 + tRNA gene nuclear encoded tRNA trytophan 7 (anticodon CCA)
Cpgi3095 11 69045510 to 69046286 776 CpG island CpG island 3095
Tssr102364 11 69045640 to 69045713 73 + TSS region transcription start site region 102364
Aurkb 11 69045647 to 69051664 6017 + protein coding gene aurora kinase B
Tssr102365 11 69045815 to 69045822 7 + TSS region transcription start site region 102365
Tssr102366 11 69045886 to 69045897 11 + TSS region transcription start site region 102366
Tssr102367 11 69045899 to 69045919 20 + TSS region transcription start site region 102367
9330160F10Rik 11 69057718 to 69060483 2765 - antisense lncRNA gene RIKEN cDNA 9330160F10 gene
Tssr102368 11 69058508 to 69058535 27 + TSS region transcription start site region 102368
Cpgi3096 11 69059168 to 69060933 1765 CpG island CpG island 3096
Tssr108617 11 69059424 to 69059443 19 - TSS region transcription start site region 108617
Tssr108618 11 69059454 to 69059501 47 - TSS region transcription start site region 108618
Tssr102369 11 69059708 to 69059745 37 + TSS region transcription start site region 102369
Tssr102370 11 69059750 to 69059809 59 + TSS region transcription start site region 102370
Borcs6 11 69059775 to 69061576 1801 + protein coding gene BLOC-1 related complex subunit 6
Tssr102371 11 69059822 to 69059841 19 + TSS region transcription start site region 102371
Tssr102372 11 69060108 to 69060131 23 + TSS region transcription start site region 102372
Tssr108619 11 69061048 to 69061063 15 - TSS region transcription start site region 108619
n-TIaat4 11 69062320 to 69062393 73 - tRNA gene nuclear encoded tRNA isoleucine 4 (anticodon AAT)
n-TTagt7 11 69062744 to 69062817 73 - tRNA gene nuclear encoded tRNA threonine 7 (anticodon AGT)
Cpgi3097 11 69062905 to 69063495 590 CpG island CpG island 3097
n-TSgct3 11 69063042 to 69063123 81 - tRNA gene nuclear encoded tRNA serine 3 (anticodon GCT)
n-TWcca6 11 69063495 to 69063566 71 - tRNA gene nuclear encoded tRNA trytophan 6 (anticodon CCA)
Cpgi3098 11 69066073 to 69066819 746 CpG island CpG island 3098
Cpgi3099 11 69070286 to 69071272 986 CpG island CpG island 3099
Tssr108620 11 69070696 to 69070721 25 - TSS region transcription start site region 108620
Tssr108621 11 69070725 to 69070757 32 - TSS region transcription start site region 108621
Tssr102373 11 69070790 to 69070856 66 + TSS region transcription start site region 102373
Tmem107 11 69070809 to 69073293 2484 + protein coding gene transmembrane protein 107
Tssr102374 11 69070857 to 69070880 23 + TSS region transcription start site region 102374
Tssr102375 11 69070922 to 69070933 11 + TSS region transcription start site region 102375
Tssr102376 11 69073424 to 69073429 5 + TSS region transcription start site region 102376
Snord118 11 69073427 to 69073561 134 + snoRNA gene small nucleolar RNA, C/D box 118