Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:6874694-7953332

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52 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr106768 11 6895099 to 6895133 34 - TSS region transcription start site region 106768
Tssr106769 11 6896127 to 6896128 1 - TSS region transcription start site region 106769
Scc6 11 6930277 to 89128908 82198631 QTL colon tumor susceptibility 6
D11Mit71 11 6930277 to 6930487 210 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 71
Vtbt11 11 6930277 to 6930487 210 QTL vertebral trabecular bone trait 11
Cpgi2569 11 7062899 to 7064802 1903 CpG island CpG island 2569
Tssr100287 11 7063329 to 7063338 9 + TSS region transcription start site region 100287
Tssr100288 11 7063401 to 7063404 3 + TSS region transcription start site region 100288
Tssr100289 11 7063423 to 7063496 73 + TSS region transcription start site region 100289
Adcy1 11 7063489 to 7178506 115017 + protein coding gene adenylate cyclase 1
Tssr100290 11 7063732 to 7063758 26 + TSS region transcription start site region 100290
Tssr100291 11 7119742 to 7119745 3 + TSS region transcription start site region 100291
Tssr100292 11 7145057 to 7145088 31 + TSS region transcription start site region 100292
Tssr106770 11 7152394 to 7152404 10 - TSS region transcription start site region 106770
Tssr100293 11 7160050 to 7160063 13 + TSS region transcription start site region 100293
Cccd201 11 7183157 to 7188569 5412 - lncRNA gene coiled coil domain 201
Tssr100294 11 7197650 to 7197656 6 + TSS region transcription start site region 100294
Tssr100295 11 7197780 to 7197795 15 + TSS region transcription start site region 100295
Igfbp1 11 7197787 to 7202546 4759 + protein coding gene insulin-like growth factor binding protein 1
Tssr100296 11 7197804 to 7197811 7 + TSS region transcription start site region 100296
Tssr100297 11 7197832 to 7197839 7 + TSS region transcription start site region 100297
Tssr100298 11 7197852 to 7197854 2 + TSS region transcription start site region 100298
Cpgi2570 11 7197888 to 7198331 443 CpG island CpG island 2570
Tssr3421 11 7199820 to 7199828 8 + TSS region transcription start site region 3421
Tssr100299 11 7199853 to 7199856 3 + TSS region transcription start site region 100299
Tssr100300 11 7199884 to 7199894 10 + TSS region transcription start site region 100300
Tssr106771 11 7200821 to 7200829 8 - TSS region transcription start site region 106771
Tssr100301 11 7201972 to 7201983 11 + TSS region transcription start site region 100301
Igfbp3 11 7206086 to 7213923 7837 - protein coding gene insulin-like growth factor binding protein 3
Tssr106772 11 7207185 to 7207213 28 - TSS region transcription start site region 106772
Tssr100302 11 7207365 to 7207380 15 + TSS region transcription start site region 100302
Tssr106773 11 7208410 to 7208428 18 - TSS region transcription start site region 106773
Tssr106774 11 7209506 to 7209512 6 - TSS region transcription start site region 106774
Tssr100303 11 7210015 to 7210023 8 + TSS region transcription start site region 100303
Tssr106775 11 7210182 to 7210194 12 - TSS region transcription start site region 106775
Cpgi2571 11 7213044 to 7214512 1468 CpG island CpG island 2571
Tssr106776 11 7213414 to 7213421 7 - TSS region transcription start site region 106776
Tssr106777 11 7213440 to 7213454 14 - TSS region transcription start site region 106777
Tssr106778 11 7213535 to 7213615 80 - TSS region transcription start site region 106778
Tssr106779 11 7213816 to 7213823 7 - TSS region transcription start site region 106779
Tssr106780 11 7213850 to 7213859 9 - TSS region transcription start site region 106780
Tssr106781 11 7213915 to 7213929 14 - TSS region transcription start site region 106781
Tssr106782 11 7213943 to 7213990 47 - TSS region transcription start site region 106782
Tssr106783 11 7214169 to 7214179 10 - TSS region transcription start site region 106783
Gm36565 11 7217097 to 7262326 45229 + lncRNA gene predicted gene, 36565
Tssr106784 11 7232189 to 7232192 3 - TSS region transcription start site region 106784
Gm11986 11 7270351 to 7290374 20023 - lincRNA gene predicted gene 11986
Gm36653 11 7404694 to 7423332 18638 + lncRNA gene predicted gene, 36653
Gm36720 11 7428876 to 7432935 4059 + lncRNA gene predicted gene, 36720
n-TDgtc10 11 7869777 to 7869848 71 + tRNA gene nuclear encoded tRNA aspartic acid 10 (anticodon GTC)
Gm27393 11 7886444 to 7886505 61 - snRNA gene predicted gene, 27393
Tgyl1 11 33966219 to 6930277 -27035942 QTL triglyceride level 1