Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:68522045-69222068

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259 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Scfq3 11 12318637 to 68609504 56290867 QTL subcutaneous fat pad weight QTL 3
W3q4 11 12318637 to 68609504 56290867 QTL weight 3 weeks QTL 4
W10q2 11 12318637 to 68609504 56290867 QTL weight 10 weeks QTL 2
Tailq1 11 12318637 to 68609504 56290867 QTL tail length QTL 1
Epfq4 11 12318637 to 68609504 56290867 QTL epididymal fat pad weight QTL 4
Orq2 11 12318637 to 68609504 56290867 QTL ovulation rate QTL 2
Lgq1 11 12318637 to 68609504 56290867 QTL late growth QTL 1
Egq4 11 12318637 to 68609504 56290867 QTL early growth QTL 4
W6q3 11 12318637 to 68609504 56290867 QTL weight 6 weeks QTL 3
Kidpq1 11 12318637 to 68609504 56290867 QTL kidney weight percentage QTL 1
Lgaq1 11 12318637 to 68609504 56290867 QTL late growth adjusted QTL 1
Eae6 11 17831966 to 68609504 50777538 QTL experimental allergic encephalomyelitis susceptibility 6
Ltxs2 11 63151287 to 68609504 5458217 QTL lethal factor toxin susceptibility 2
Pik3r6 11 68503019 to 68552698 49679 + protein coding gene phosphoinositide-3-kinase regulatory subunit 5
Cpgi3078 11 68531421 to 68531581 160 CpG island CpG island 3078
Tssr102323 11 68534205 to 68534238 33 + TSS region transcription start site region 102323
Tssr102324 11 68539602 to 68539627 25 + TSS region transcription start site region 102324
D11Mit277 11 68551688 to 68551811 123 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 277
Cpgi3079 11 68555915 to 68556541 626 CpG island CpG island 3079
Mfsd6l 11 68556186 to 68558245 2059 + protein coding gene major facilitator superfamily domain containing 6-like
Tssr102325 11 68556309 to 68556319 10 + TSS region transcription start site region 102325
D11Mit28 11 68560360 to 68560508 148 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 28
Gm40036 11 68562235 to 68572414 10179 + lncRNA gene predicted gene, 40036
Ccdc42os 11 68583270 to 68585621 2351 - antisense lncRNA gene coiled-coil domain containing 42, opposite strand
Tssr102326 11 68586986 to 68587030 44 + TSS region transcription start site region 102326
Ccdc42 11 68587037 to 68597954 10917 + protein coding gene coiled-coil domain containing 42
Tssr102327 11 68594053 to 68594064 11 + TSS region transcription start site region 102327
D11Mit4 11 68609257 to 68609504 247 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 4
Tssr102328 11 68614218 to 68614221 3 + TSS region transcription start site region 102328
Tssr102329 11 68623873 to 68623876 3 + TSS region transcription start site region 102329
Cpgi3080 11 68691294 to 68692452 1158 CpG island CpG island 3080
Tssr108586 11 68691726 to 68691754 28 - TSS region transcription start site region 108586
Tssr102330 11 68691906 to 68691911 5 + TSS region transcription start site region 102330
Myh10 11 68691915 to 68816625 124710 + protein coding gene myosin, heavy polypeptide 10, non-muscle
Tssr102331 11 68691926 to 68691944 18 + TSS region transcription start site region 102331
Tssr102332 11 68691946 to 68691979 33 + TSS region transcription start site region 102332
Tssr102333 11 68692070 to 68692086 16 + TSS region transcription start site region 102333
Tssr102334 11 68692090 to 68692095 5 + TSS region transcription start site region 102334
Tssr102335 11 68692097 to 68692126 29 + TSS region transcription start site region 102335
Tssr102336 11 68692131 to 68692138 7 + TSS region transcription start site region 102336
Cpgi3081 11 68692516 to 68693173 657 CpG island CpG island 3081
Tssr102337 11 68704506 to 68704507 1 + TSS region transcription start site region 102337
Tssr102338 11 68767989 to 68768018 29 + TSS region transcription start site region 102338
Ndel1 11 68821434 to 68853131 31697 - protein coding gene nudE neurodevelopment protein 1 like 1
Tssr108587 11 68825071 to 68825074 3 - TSS region transcription start site region 108587
Tssr108588 11 68825318 to 68825320 2 - TSS region transcription start site region 108588
Tssr108589 11 68838745 to 68838752 7 - TSS region transcription start site region 108589
Cpgi3082 11 68852382 to 68853420 1038 CpG island CpG island 3082
Tssr108590 11 68852983 to 68853003 20 - TSS region transcription start site region 108590
Tssr108591 11 68853019 to 68853101 82 - TSS region transcription start site region 108591
Tssr108592 11 68853119 to 68853140 21 - TSS region transcription start site region 108592
Tssr102339 11 68853295 to 68853340 45 + TSS region transcription start site region 102339
Tssr102340 11 68853373 to 68853388 15 + TSS region transcription start site region 102340
Tssr102341 11 68853395 to 68853402 7 + TSS region transcription start site region 102341
Tssr108593 11 68854053 to 68854056 3 - TSS region transcription start site region 108593
Tssr3535 11 68854150 to 68854179 29 - TSS region transcription start site region 3535
Tssr108594 11 68854284 to 68854299 15 - TSS region transcription start site region 108594
Tssr108595 11 68860005 to 68860017 12 - TSS region transcription start site region 108595
Tssr108596 11 68860022 to 68860063 41 - TSS region transcription start site region 108596
Tssr108597 11 68863878 to 68863883 5 - TSS region transcription start site region 108597
Tssr108598 11 68863981 to 68863988 7 - TSS region transcription start site region 108598
Tssr102342 11 68864160 to 68864199 39 + TSS region transcription start site region 102342
Tssr3536 11 68864761 to 68864762 1 + TSS region transcription start site region 3536
Tssr108599 11 68871848 to 68871857 9 - TSS region transcription start site region 108599
Tssr108600 11 68871859 to 68871874 15 - TSS region transcription start site region 108600
Tssr108601 11 68871883 to 68871927 44 - TSS region transcription start site region 108601
Tssr102343 11 68872032 to 68872043 11 + TSS region transcription start site region 102343
Tssr3537 11 68872045 to 68872068 23 + TSS region transcription start site region 3537
Tssr3538 11 68872098 to 68872107 9 + TSS region transcription start site region 3538
Tssr102344 11 68888517 to 68888523 6 + TSS region transcription start site region 102344
Tssr102345 11 68888545 to 68888562 17 + TSS region transcription start site region 102345
Rnf222 11 68888553 to 68895777 7224 + protein coding gene ring finger protein 222
Tssr102346 11 68888578 to 68888588 10 + TSS region transcription start site region 102346
Tssr102347 11 68888594 to 68888605 11 + TSS region transcription start site region 102347
Cpgi3083 11 68892615 to 68893214 599 CpG island CpG island 3083
Cpgi3084 11 68901064 to 68901962 898 CpG island CpG island 3084
Tssr102348 11 68901517 to 68901529 12 + TSS region transcription start site region 102348
Tssr102349 11 68901538 to 68901633 95 + TSS region transcription start site region 102349
Rpl26 11 68901566 to 68904534 2968 + protein coding gene ribosomal protein L26
Tssr102350 11 68901643 to 68901657 14 + TSS region transcription start site region 102350
Gm22608 11 68908020 to 68908122 102 + snRNA gene predicted gene, 22608
Odf4 11 68921835 to 68927081 5246 - protein coding gene outer dense fiber of sperm tails 4
Tssr108602 11 68927061 to 68927101 40 - TSS region transcription start site region 108602
Tssr108603 11 68930060 to 68930071 11 - TSS region transcription start site region 108603
D11Ertd518e 11 68941491 to 68941736 245 DNA segment DNA segment, Chr 11, ERATO Doi 518, expressed
Arhgef15 11 68943155 to 68957480 14325 - protein coding gene Rho guanine nucleotide exchange factor (GEF) 15
Cpgi3085 11 68947298 to 68947585 287 CpG island CpG island 3085
Tssr108604 11 68947373 to 68947412 39 - TSS region transcription start site region 108604
Tssr108605 11 68947540 to 68947574 34 - TSS region transcription start site region 108605
Cpgi3086 11 68954379 to 68954686 307 CpG island CpG island 3086
Tssr108606 11 68956195 to 68956229 34 - TSS region transcription start site region 108606
Tssr108607 11 68956873 to 68956909 36 - TSS region transcription start site region 108607
Gm32273 11 68956946 to 68962325 5379 + lncRNA gene predicted gene, 32273
Tssr102351 11 68956975 to 68956994 19 + TSS region transcription start site region 102351
Tssr108608 11 68957445 to 68957485 40 - TSS region transcription start site region 108608
Slc25a35 11 68967607 to 68972516 4909 + protein coding gene solute carrier family 25, member 35
Tssr102352 11 68967641 to 68967652 11 + TSS region transcription start site region 102352
Cpgi3087 11 68967662 to 68968304 642 CpG island CpG island 3087
Tssr102353 11 68968107 to 68968175 68 + TSS region transcription start site region 102353
Tssr102354 11 68968179 to 68968186 7 + TSS region transcription start site region 102354
Rangrf 11 68972484 to 68975185 2701 - protein coding gene RAN guanine nucleotide release factor
Tssr108609 11 68973278 to 68973292 14 - TSS region transcription start site region 108609
Cpgi3088 11 68973300 to 68974028 728 CpG island CpG island 3088
Tssr108610 11 68973332 to 68973353 21 - TSS region transcription start site region 108610
Tssr108611 11 68973364 to 68973382 18 - TSS region transcription start site region 108611
Tssr108612 11 68973840 to 68973864 24 - TSS region transcription start site region 108612
Gm32384 11 68977004 to 68983568 6564 - lncRNA gene predicted gene, 32384
Pfas 11 68985701 to 69008460 22759 - protein coding gene phosphoribosylformylglycinamidine synthase (FGAR amidotransferase)
Cpgi3089 11 68988277 to 68988647 370 CpG island CpG island 3089
Mir3062 11 68990574 to 68990678 104 - miRNA gene microRNA 3062
Gm25819 11 68996002 to 68996085 83 + snRNA gene predicted gene, 25819
Cpgi3090 11 69008202 to 69008715 513 CpG island CpG island 3090
Tssr108613 11 69008422 to 69008477 55 - TSS region transcription start site region 108613
Tssr108614 11 69011972 to 69011996 24 - TSS region transcription start site region 108614
Tssr108615 11 69012447 to 69012458 11 - TSS region transcription start site region 108615
Tssr108616 11 69012463 to 69012500 37 - TSS region transcription start site region 108616
Cpgi3091 11 69015772 to 69016376 604 CpG island CpG island 3091
Ctc1 11 69015911 to 69036473 20562 + protein coding gene CTS telomere maintenance complex component 1
Tssr102355 11 69016073 to 69016135 62 + TSS region transcription start site region 102355
Tssr102356 11 69020905 to 69020908 3 + TSS region transcription start site region 102356
Tssr102357 11 69026043 to 69026055 12 + TSS region transcription start site region 102357
Tssr102358 11 69026066 to 69026085 19 + TSS region transcription start site region 102358
Tssr102359 11 69026824 to 69026834 10 + TSS region transcription start site region 102359
Tssr102360 11 69027088 to 69027123 35 + TSS region transcription start site region 102360
Tssr102361 11 69027294 to 69027336 42 + TSS region transcription start site region 102361
Tssr102362 11 69027340 to 69027359 19 + TSS region transcription start site region 102362
Tssr102363 11 69027975 to 69027982 7 + TSS region transcription start site region 102363
n-TIaat5 11 69037003 to 69037076 73 + tRNA gene nuclear encoded tRNA isoleucine 5 (anticodon AAT)
Cpgi3092 11 69037071 to 69037478 407 CpG island CpG island 3092
n-TSaga4 11 69037477 to 69037558 81 + tRNA gene nuclear encoded tRNA serine 4 (anticodon AGA)
n-TTagt8 11 69037853 to 69037926 73 + tRNA gene nuclear encoded tRNA threonine 8 (anticodon AGT)
D11Mit368 11 69039071 to 69039189 118 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology-368
nmf65 11 69039071 to 89076112 20037041 heritable phenotypic marker neuroscience mutagenesis facility, 65
Cpgi3093 11 69039885 to 69040844 959 CpG island CpG island 3093
n-TPcgg3 11 69040385 to 69040456 71 + tRNA gene nuclear encoded tRNA proline 3 (anticodon CGG)
n-TDgtc9 11 69040984 to 69041055 71 + tRNA gene nuclear encoded tRNA aspartic acid 9 (anticodon GTC)
n-TGtcc6 11 69041278 to 69041349 71 - tRNA gene nuclear encoded tRNA glycine 6 (anticodon TCC)
Cpgi3094 11 69041633 to 69041912 279 CpG island CpG island 3094
n-TWcca7 11 69041826 to 69041897 71 + tRNA gene nuclear encoded tRNA trytophan 7 (anticodon CCA)
Cpgi3095 11 69045510 to 69046286 776 CpG island CpG island 3095
Tssr102364 11 69045640 to 69045713 73 + TSS region transcription start site region 102364
Aurkb 11 69045647 to 69051664 6017 + protein coding gene aurora kinase B
Tssr102365 11 69045815 to 69045822 7 + TSS region transcription start site region 102365
Tssr102366 11 69045886 to 69045897 11 + TSS region transcription start site region 102366
Tssr102367 11 69045899 to 69045919 20 + TSS region transcription start site region 102367
9330160F10Rik 11 69057718 to 69060483 2765 - antisense lncRNA gene RIKEN cDNA 9330160F10 gene
Tssr102368 11 69058508 to 69058535 27 + TSS region transcription start site region 102368
Cpgi3096 11 69059168 to 69060933 1765 CpG island CpG island 3096
Tssr108617 11 69059424 to 69059443 19 - TSS region transcription start site region 108617
Tssr108618 11 69059454 to 69059501 47 - TSS region transcription start site region 108618
Tssr102369 11 69059708 to 69059745 37 + TSS region transcription start site region 102369
Tssr102370 11 69059750 to 69059809 59 + TSS region transcription start site region 102370
Borcs6 11 69059775 to 69061576 1801 + protein coding gene BLOC-1 related complex subunit 6
Tssr102371 11 69059822 to 69059841 19 + TSS region transcription start site region 102371
Tssr102372 11 69060108 to 69060131 23 + TSS region transcription start site region 102372
Tssr108619 11 69061048 to 69061063 15 - TSS region transcription start site region 108619
n-TIaat4 11 69062320 to 69062393 73 - tRNA gene nuclear encoded tRNA isoleucine 4 (anticodon AAT)
n-TTagt7 11 69062744 to 69062817 73 - tRNA gene nuclear encoded tRNA threonine 7 (anticodon AGT)
Cpgi3097 11 69062905 to 69063495 590 CpG island CpG island 3097
n-TSgct3 11 69063042 to 69063123 81 - tRNA gene nuclear encoded tRNA serine 3 (anticodon GCT)
n-TWcca6 11 69063495 to 69063566 71 - tRNA gene nuclear encoded tRNA trytophan 6 (anticodon CCA)
Cpgi3098 11 69066073 to 69066819 746 CpG island CpG island 3098
Cpgi3099 11 69070286 to 69071272 986 CpG island CpG island 3099
Tssr108620 11 69070696 to 69070721 25 - TSS region transcription start site region 108620
Tssr108621 11 69070725 to 69070757 32 - TSS region transcription start site region 108621
Tssr102373 11 69070790 to 69070856 66 + TSS region transcription start site region 102373
Tmem107 11 69070809 to 69073293 2484 + protein coding gene transmembrane protein 107
Tssr102374 11 69070857 to 69070880 23 + TSS region transcription start site region 102374
Tssr102375 11 69070922 to 69070933 11 + TSS region transcription start site region 102375
Tssr102376 11 69073424 to 69073429 5 + TSS region transcription start site region 102376
Snord118 11 69073427 to 69073561 134 + snoRNA gene small nucleolar RNA, C/D box 118
Gm12306 11 69074490 to 69074660 170 + pseudogene predicted gene 12306
Gm25371 11 69075015 to 69075115 100 + snRNA gene predicted gene, 25371
Cpgi3100 11 69088118 to 69089651 1533 CpG island CpG island 3100
Tssr102377 11 69088482 to 69088493 11 + TSS region transcription start site region 102377
Tssr102378 11 69088515 to 69088553 38 + TSS region transcription start site region 102378
Vamp2 11 69088528 to 69092381 3853 + protein coding gene vesicle-associated membrane protein 2
Tssr3539 11 69088606 to 69088607 1 + TSS region transcription start site region 3539
Tssr102379 11 69089141 to 69089162 21 + TSS region transcription start site region 102379
Tssr102380 11 69089743 to 69089764 21 + TSS region transcription start site region 102380
Tssr102381 11 69089768 to 69089812 44 + TSS region transcription start site region 102381
Tssr102382 11 69089956 to 69089997 41 + TSS region transcription start site region 102382
Tssr102383 11 69090675 to 69090678 3 + TSS region transcription start site region 102383
Tssr102384 11 69090692 to 69090757 65 + TSS region transcription start site region 102384
Tssr102385 11 69090764 to 69090817 53 + TSS region transcription start site region 102385
Tssr102386 11 69090830 to 69090841 11 + TSS region transcription start site region 102386
Tssr102387 11 69090843 to 69090859 16 + TSS region transcription start site region 102387
Tssr102388 11 69090860 to 69090872 12 + TSS region transcription start site region 102388
Tssr102389 11 69090876 to 69090897 21 + TSS region transcription start site region 102389
Tssr102390 11 69090903 to 69090929 26 + TSS region transcription start site region 102390
Tssr102391 11 69090941 to 69090950 9 + TSS region transcription start site region 102391
Tssr102392 11 69090989 to 69091009 20 + TSS region transcription start site region 102392
Tssr102393 11 69091021 to 69091038 17 + TSS region transcription start site region 102393
Tssr102394 11 69091055 to 69091066 11 + TSS region transcription start site region 102394
Tssr102395 11 69091109 to 69091116 7 + TSS region transcription start site region 102395
Tssr102396 11 69091128 to 69091133 5 + TSS region transcription start site region 102396
Tssr102397 11 69091173 to 69091178 5 + TSS region transcription start site region 102397
Tssr3540 11 69091222 to 69091231 9 + TSS region transcription start site region 3540
Tssr102398 11 69091416 to 69091423 7 + TSS region transcription start site region 102398
Tssr102399 11 69091445 to 69091450 5 + TSS region transcription start site region 102399