Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:67989034-68740700

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120 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Scfq3 11 12318637 to 68609504 56290867 QTL subcutaneous fat pad weight QTL 3
W3q4 11 12318637 to 68609504 56290867 QTL weight 3 weeks QTL 4
W10q2 11 12318637 to 68609504 56290867 QTL weight 10 weeks QTL 2
Kidpq1 11 12318637 to 68609504 56290867 QTL kidney weight percentage QTL 1
Tailq1 11 12318637 to 68609504 56290867 QTL tail length QTL 1
Egq4 11 12318637 to 68609504 56290867 QTL early growth QTL 4
Epfq4 11 12318637 to 68609504 56290867 QTL epididymal fat pad weight QTL 4
Lgaq1 11 12318637 to 68609504 56290867 QTL late growth adjusted QTL 1
Lgq1 11 12318637 to 68609504 56290867 QTL late growth QTL 1
W6q3 11 12318637 to 68609504 56290867 QTL weight 6 weeks QTL 3
Orq2 11 12318637 to 68609504 56290867 QTL ovulation rate QTL 2
Eae6 11 17831966 to 68609504 50777538 QTL experimental allergic encephalomyelitis susceptibility 6
Ltxs2 11 63151287 to 68609504 5458217 QTL lethal factor toxin susceptibility 2
Stx8 11 67966411 to 68207148 240737 + protein coding gene syntaxin 8
Gm12303 11 68035038 to 68035710 672 - pseudogene predicted gene 12303
Gm26157 11 68053335 to 68053460 125 + rRNA gene predicted gene, 26157
D11Mit27.1 11 68056535 to 68056675 140 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 27.1
D11Mit27 11 68056690 to 68056791 101 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 27
Gm12304 11 68095580 to 68095964 384 - pseudogene predicted gene 12304
Tssr108561 11 68095979 to 68095991 12 - TSS region transcription start site region 108561
Tssr3533 11 68118004 to 68118006 2 + TSS region transcription start site region 3533
Tssr102291 11 68122670 to 68122685 15 + TSS region transcription start site region 102291
Tssr102292 11 68153875 to 68153882 7 + TSS region transcription start site region 102292
Tssr3534 11 68176865 to 68176874 9 + TSS region transcription start site region 3534
C78197 11 68192193 to 68196153 3960 - antisense lncRNA gene expressed sequence C78197
Tssr108562 11 68196075 to 68196081 6 - TSS region transcription start site region 108562
Tssr108563 11 68199208 to 68199251 43 - TSS region transcription start site region 108563
Ntn1 11 68209364 to 68386826 177462 - protein coding gene netrin 1
Cpgi3074 11 68212942 to 68213330 388 CpG island CpG island 3074
Mir6406 11 68220892 to 68221011 119 + miRNA gene microRNA 6406
Gm12305 11 68269558 to 68270879 1321 - sense intronic lncRNA gene predicted gene 12305
Tssr108564 11 68270844 to 68270885 41 - TSS region transcription start site region 108564
Tssr108565 11 68270953 to 68270961 8 - TSS region transcription start site region 108565
Tssr108566 11 68271245 to 68271254 9 - TSS region transcription start site region 108566
2810047J09Rik 11 68364034 to 68365700 1666 unclassified gene RIKEN cDNA 2810047J09 gene
Cpgi3075 11 68384542 to 68387615 3073 CpG island CpG island 3075
Tssr108567 11 68386805 to 68386819 14 - TSS region transcription start site region 108567
Tssr108568 11 68386821 to 68386835 14 - TSS region transcription start site region 108568
Tssr108569 11 68386841 to 68386860 19 - TSS region transcription start site region 108569
Tssr108570 11 68386871 to 68386889 18 - TSS region transcription start site region 108570
Tssr108571 11 68386899 to 68386917 18 - TSS region transcription start site region 108571
Tssr108572 11 68386931 to 68386942 11 - TSS region transcription start site region 108572
Tssr108573 11 68386943 to 68386970 27 - TSS region transcription start site region 108573
Tssr108574 11 68386974 to 68387002 28 - TSS region transcription start site region 108574
Tssr108575 11 68387168 to 68387194 26 - TSS region transcription start site region 108575
Gm31954 11 68398479 to 68406574 8095 + lncRNA gene predicted gene, 31954
Cpgi3076 11 68399508 to 68400814 1306 CpG island CpG island 3076
Tssr108576 11 68400466 to 68400482 16 - TSS region transcription start site region 108576
Tssr108577 11 68400782 to 68400808 26 - TSS region transcription start site region 108577
Tssr108578 11 68400812 to 68400836 24 - TSS region transcription start site region 108578
Tssr108579 11 68401057 to 68401076 19 - TSS region transcription start site region 108579
Tssr108580 11 68401087 to 68401104 17 - TSS region transcription start site region 108580
Gm32046 11 68430688 to 68432038 1350 - lncRNA gene predicted gene, 32046
Tssr102293 11 68431903 to 68431916 13 + TSS region transcription start site region 102293
Tssr102294 11 68431927 to 68431947 20 + TSS region transcription start site region 102294
Tssr108581 11 68431979 to 68432005 26 - TSS region transcription start site region 108581
Tssr108582 11 68432011 to 68432032 21 - TSS region transcription start site region 108582
Tssr102295 11 68432112 to 68432170 58 + TSS region transcription start site region 102295
Pik3r5 11 68432125 to 68497849 65724 + protein coding gene phosphoinositide-3-kinase regulatory subunit 5
Cpgi3077 11 68432144 to 68432811 667 CpG island CpG island 3077
Tssr102296 11 68435983 to 68435988 5 + TSS region transcription start site region 102296
Tssr102297 11 68442620 to 68442640 20 + TSS region transcription start site region 102297
Tssr102298 11 68442789 to 68442826 37 + TSS region transcription start site region 102298
Tssr108583 11 68446004 to 68446010 6 - TSS region transcription start site region 108583
Tssr102299 11 68447558 to 68447578 20 + TSS region transcription start site region 102299
Tssr102300 11 68447597 to 68447641 44 + TSS region transcription start site region 102300
Tssr108584 11 68451363 to 68451369 6 - TSS region transcription start site region 108584
Tssr102301 11 68451636 to 68451654 18 + TSS region transcription start site region 102301
Tssr102302 11 68451673 to 68451686 13 + TSS region transcription start site region 102302
Tssr102303 11 68458384 to 68458412 28 + TSS region transcription start site region 102303
Tssr102304 11 68459527 to 68459531 4 + TSS region transcription start site region 102304
Tssr108585 11 68468270 to 68468282 12 - TSS region transcription start site region 108585
Tssr102305 11 68468529 to 68468570 41 + TSS region transcription start site region 102305
Tssr102306 11 68473816 to 68473855 39 + TSS region transcription start site region 102306
Tssr102307 11 68473856 to 68473867 11 + TSS region transcription start site region 102307
Tssr102308 11 68475401 to 68475415 14 + TSS region transcription start site region 102308
Tssr102309 11 68475431 to 68475465 34 + TSS region transcription start site region 102309
Tssr102310 11 68476307 to 68476344 37 + TSS region transcription start site region 102310
Tssr102311 11 68491957 to 68491969 12 + TSS region transcription start site region 102311
Tssr102312 11 68495395 to 68495407 12 + TSS region transcription start site region 102312
Tssr102313 11 68496450 to 68496457 7 + TSS region transcription start site region 102313
Tssr102314 11 68496501 to 68496512 11 + TSS region transcription start site region 102314
Tssr102315 11 68496526 to 68496552 26 + TSS region transcription start site region 102315
Tssr102316 11 68496565 to 68496582 17 + TSS region transcription start site region 102316
Tssr102317 11 68496612 to 68496625 13 + TSS region transcription start site region 102317
Tssr102318 11 68496648 to 68496663 15 + TSS region transcription start site region 102318
Tssr102319 11 68496684 to 68496703 19 + TSS region transcription start site region 102319
Tssr102320 11 68496707 to 68496720 13 + TSS region transcription start site region 102320
D11Mit1000 11 68500726 to 68500869 143 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 1000
Pik3r6 11 68503019 to 68552698 49679 + protein coding gene phosphoinositide-3-kinase regulatory subunit 5
Tssr102321 11 68503069 to 68503076 7 + TSS region transcription start site region 102321
Tssr102322 11 68503081 to 68503113 32 + TSS region transcription start site region 102322
Cpgi3078 11 68531421 to 68531581 160 CpG island CpG island 3078
Tssr102323 11 68534205 to 68534238 33 + TSS region transcription start site region 102323
Tssr102324 11 68539602 to 68539627 25 + TSS region transcription start site region 102324
D11Mit277 11 68551688 to 68551811 123 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 277
Cpgi3079 11 68555915 to 68556541 626 CpG island CpG island 3079
Mfsd6l 11 68556186 to 68558245 2059 + protein coding gene major facilitator superfamily domain containing 6-like
Tssr102325 11 68556309 to 68556319 10 + TSS region transcription start site region 102325
D11Mit28 11 68560360 to 68560508 148 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 28
Gm40036 11 68562235 to 68572414 10179 + lncRNA gene predicted gene, 40036
Ccdc42os 11 68583270 to 68585621 2351 - antisense lncRNA gene coiled-coil domain containing 42, opposite strand
Tssr102326 11 68586986 to 68587030 44 + TSS region transcription start site region 102326
Ccdc42 11 68587037 to 68597954 10917 + protein coding gene coiled-coil domain containing 42
Tssr102327 11 68594053 to 68594064 11 + TSS region transcription start site region 102327
D11Mit4 11 68609257 to 68609504 247 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 4
Tssr102328 11 68614218 to 68614221 3 + TSS region transcription start site region 102328
Tssr102329 11 68623873 to 68623876 3 + TSS region transcription start site region 102329
Cpgi3080 11 68691294 to 68692452 1158 CpG island CpG island 3080
Tssr108586 11 68691726 to 68691754 28 - TSS region transcription start site region 108586
Tssr102330 11 68691906 to 68691911 5 + TSS region transcription start site region 102330
Myh10 11 68691915 to 68816625 124710 + protein coding gene myosin, heavy polypeptide 10, non-muscle
Tssr102331 11 68691926 to 68691944 18 + TSS region transcription start site region 102331
Tssr102332 11 68691946 to 68691979 33 + TSS region transcription start site region 102332
Tssr102333 11 68692070 to 68692086 16 + TSS region transcription start site region 102333
Tssr102334 11 68692090 to 68692095 5 + TSS region transcription start site region 102334
Tssr102335 11 68692097 to 68692126 29 + TSS region transcription start site region 102335
Tssr102336 11 68692131 to 68692138 7 + TSS region transcription start site region 102336
Cpgi3081 11 68692516 to 68693173 657 CpG island CpG island 3081
Tssr102337 11 68704506 to 68704507 1 + TSS region transcription start site region 102337