Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:67442670-68802685

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203 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Egq4 11 12318637 to 68609504 56290867 QTL early growth QTL 4
Scfq3 11 12318637 to 68609504 56290867 QTL subcutaneous fat pad weight QTL 3
Kidpq1 11 12318637 to 68609504 56290867 QTL kidney weight percentage QTL 1
Lgq1 11 12318637 to 68609504 56290867 QTL late growth QTL 1
Epfq4 11 12318637 to 68609504 56290867 QTL epididymal fat pad weight QTL 4
W6q3 11 12318637 to 68609504 56290867 QTL weight 6 weeks QTL 3
Orq2 11 12318637 to 68609504 56290867 QTL ovulation rate QTL 2
Lgaq1 11 12318637 to 68609504 56290867 QTL late growth adjusted QTL 1
W10q2 11 12318637 to 68609504 56290867 QTL weight 10 weeks QTL 2
Tailq1 11 12318637 to 68609504 56290867 QTL tail length QTL 1
W3q4 11 12318637 to 68609504 56290867 QTL weight 3 weeks QTL 4
Eae6 11 17831966 to 68609504 50777538 QTL experimental allergic encephalomyelitis susceptibility 6
Ltxs2 11 63151287 to 68609504 5458217 QTL lethal factor toxin susceptibility 2
Cpgi3069 11 67454628 to 67456231 1603 CpG island CpG island 3069
Tssr102237 11 67454963 to 67454980 17 + TSS region transcription start site region 102237
Tssr102238 11 67455068 to 67455156 88 + TSS region transcription start site region 102238
Tssr102239 11 67455339 to 67455403 64 + TSS region transcription start site region 102239
Gas7 11 67455437 to 67688990 233553 + protein coding gene growth arrest specific 7
Tssr102240 11 67479761 to 67479774 13 + TSS region transcription start site region 102240
Tssr102241 11 67492317 to 67492338 21 + TSS region transcription start site region 102241
Tssr108552 11 67500968 to 67501006 38 - TSS region transcription start site region 108552
D11Mit351 11 67517049 to 67517157 108 DNA segment DNA Segment, Chr 11 Massachusetts Institute of Technology 351
Tssr102242 11 67532448 to 67532476 28 + TSS region transcription start site region 102242
Tssr102243 11 67533038 to 67533059 21 + TSS region transcription start site region 102243
Tssr102244 11 67533075 to 67533091 16 + TSS region transcription start site region 102244
Tssr102245 11 67559831 to 67559834 3 + TSS region transcription start site region 102245
Tssr102246 11 67564476 to 67564487 11 + TSS region transcription start site region 102246
Tssr102247 11 67571215 to 67571267 52 + TSS region transcription start site region 102247
Gm12301 11 67571622 to 67577466 5844 - antisense lncRNA gene predicted gene 12301
Tssr108553 11 67581934 to 67581942 8 - TSS region transcription start site region 108553
Tssr102248 11 67586520 to 67586546 26 + TSS region transcription start site region 102248
Tssr102249 11 67586552 to 67586563 11 + TSS region transcription start site region 102249
Tssr102250 11 67586592 to 67586601 9 + TSS region transcription start site region 102250
Tssr102251 11 67586609 to 67586618 9 + TSS region transcription start site region 102251
Tssr102252 11 67586625 to 67586634 9 + TSS region transcription start site region 102252
Tssr102253 11 67586644 to 67586662 18 + TSS region transcription start site region 102253
Tssr102254 11 67586675 to 67586720 45 + TSS region transcription start site region 102254
Tssr102255 11 67586750 to 67586761 11 + TSS region transcription start site region 102255
Tssr108554 11 67589162 to 67589164 2 - TSS region transcription start site region 108554
Tssr102256 11 67596521 to 67596573 52 + TSS region transcription start site region 102256
Tssr102257 11 67596614 to 67596621 7 + TSS region transcription start site region 102257
Tssr102258 11 67596627 to 67596636 9 + TSS region transcription start site region 102258
Tssr102259 11 67613785 to 67613797 12 + TSS region transcription start site region 102259
Tssr102260 11 67617150 to 67617167 17 + TSS region transcription start site region 102260
Tssr102261 11 67617168 to 67617192 24 + TSS region transcription start site region 102261
D11Mit297 11 67624967 to 67625091 124 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 297
D11Mit115 11 67639172 to 67639268 96 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 115
Tssr102262 11 67643297 to 67643317 20 + TSS region transcription start site region 102262
Tssr102263 11 67646594 to 67646607 13 + TSS region transcription start site region 102263
Tssr102264 11 67652479 to 67652495 16 + TSS region transcription start site region 102264
Tssr102265 11 67652548 to 67652563 15 + TSS region transcription start site region 102265
Tssr102266 11 67652574 to 67652594 20 + TSS region transcription start site region 102266
Tssr102267 11 67652598 to 67652637 39 + TSS region transcription start site region 102267
Tssr102268 11 67652642 to 67652653 11 + TSS region transcription start site region 102268
Tssr102269 11 67652717 to 67652766 49 + TSS region transcription start site region 102269
Tssr102270 11 67652835 to 67652858 23 + TSS region transcription start site region 102270
Tssr102271 11 67656045 to 67656065 20 + TSS region transcription start site region 102271
Glp2r 11 67663784 to 67771153 107369 - protein coding gene glucagon-like peptide 2 receptor
Tssr102272 11 67682155 to 67682165 10 + TSS region transcription start site region 102272
Tssr102273 11 67682525 to 67682535 10 + TSS region transcription start site region 102273
Tssr102274 11 67683506 to 67683531 25 + TSS region transcription start site region 102274
Tssr102275 11 67683888 to 67683909 21 + TSS region transcription start site region 102275
Tssr102276 11 67684198 to 67684223 25 + TSS region transcription start site region 102276
Tssr102277 11 67684612 to 67684635 23 + TSS region transcription start site region 102277
Tssr102278 11 67684675 to 67684687 12 + TSS region transcription start site region 102278
Tssr102279 11 67685049 to 67685064 15 + TSS region transcription start site region 102279
Tssr102280 11 67686644 to 67686656 12 + TSS region transcription start site region 102280
Tssr102281 11 67687132 to 67687139 7 + TSS region transcription start site region 102281
Cpgi3070 11 67695069 to 67695845 776 CpG island CpG island 3070
Tssr108555 11 67695209 to 67695224 15 - TSS region transcription start site region 108555
Tssr102282 11 67695314 to 67695326 12 + TSS region transcription start site region 102282
Rcvrn 11 67695326 to 67703333 8007 + protein coding gene recoverin
Tssr102283 11 67695334 to 67695376 42 + TSS region transcription start site region 102283
Tssr3532 11 67695401 to 67695406 5 + TSS region transcription start site region 3532
Tssr108556 11 67771115 to 67771134 19 - TSS region transcription start site region 108556
Gsg1l2 11 67774608 to 67789898 15290 + protein coding gene GSG1-like 2
Tssr102284 11 67798250 to 67798259 9 + TSS region transcription start site region 102284
Tssr102285 11 67798269 to 67798286 17 + TSS region transcription start site region 102285
Dhrs7c 11 67798271 to 67816002 17731 + protein coding gene dehydrogenase/reductase (SDR family) member 7C
Tssr102286 11 67798290 to 67798298 8 + TSS region transcription start site region 102286
Gm40032 11 67817882 to 67844519 26637 - lncRNA gene predicted gene, 40032
Usp43 11 67854523 to 67922153 67630 - protein coding gene ubiquitin specific peptidase 43
Cpgi3071 11 67921094 to 67922659 1565 CpG island CpG island 3071
9130017K11Rik 11 67921504 to 67947659 26155 + unclassified non-coding RNA gene RIKEN cDNA 9130017K11 gene
Tssr108557 11 67922136 to 67922158 22 - TSS region transcription start site region 108557
Tssr108558 11 67922160 to 67922188 28 - TSS region transcription start site region 108558
Tssr102287 11 67922370 to 67922387 17 + TSS region transcription start site region 102287
Cfap52 11 67924806 to 67965651 40845 - protein coding gene cilia and flagella associated protein 52
Cpgi3072 11 67965434 to 67965679 245 CpG island CpG island 3072
Tssr108559 11 67965606 to 67965630 24 - TSS region transcription start site region 108559
Tssr108560 11 67965631 to 67965663 32 - TSS region transcription start site region 108560
Cpgi3073 11 67966324 to 67966593 269 CpG island CpG island 3073
Stx8 11 67966411 to 68207148 240737 + protein coding gene syntaxin 8
Tssr102288 11 67966442 to 67966497 55 + TSS region transcription start site region 102288
Tssr102289 11 67975531 to 67975537 6 + TSS region transcription start site region 102289
Tssr102290 11 67980492 to 67980496 4 + TSS region transcription start site region 102290
Gm12303 11 68035038 to 68035710 672 - pseudogene predicted gene 12303
Gm26157 11 68053335 to 68053460 125 + rRNA gene predicted gene, 26157
D11Mit27.1 11 68056535 to 68056675 140 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 27.1
D11Mit27 11 68056690 to 68056791 101 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 27
Gm12304 11 68095580 to 68095964 384 - pseudogene predicted gene 12304
Tssr108561 11 68095979 to 68095991 12 - TSS region transcription start site region 108561
Tssr3533 11 68118004 to 68118006 2 + TSS region transcription start site region 3533
Tssr102291 11 68122670 to 68122685 15 + TSS region transcription start site region 102291
Tssr102292 11 68153875 to 68153882 7 + TSS region transcription start site region 102292
Tssr3534 11 68176865 to 68176874 9 + TSS region transcription start site region 3534
C78197 11 68192193 to 68196153 3960 - antisense lncRNA gene expressed sequence C78197
Tssr108562 11 68196075 to 68196081 6 - TSS region transcription start site region 108562
Tssr108563 11 68199208 to 68199251 43 - TSS region transcription start site region 108563
Ntn1 11 68209364 to 68386826 177462 - protein coding gene netrin 1
Cpgi3074 11 68212942 to 68213330 388 CpG island CpG island 3074
Mir6406 11 68220892 to 68221011 119 + miRNA gene microRNA 6406
Gm12305 11 68269558 to 68270879 1321 - sense intronic lncRNA gene predicted gene 12305
Tssr108564 11 68270844 to 68270885 41 - TSS region transcription start site region 108564
Tssr108565 11 68270953 to 68270961 8 - TSS region transcription start site region 108565
Tssr108566 11 68271245 to 68271254 9 - TSS region transcription start site region 108566
2810047J09Rik 11 68364034 to 68365700 1666 unclassified gene RIKEN cDNA 2810047J09 gene
Cpgi3075 11 68384542 to 68387615 3073 CpG island CpG island 3075
Tssr108567 11 68386805 to 68386819 14 - TSS region transcription start site region 108567
Tssr108568 11 68386821 to 68386835 14 - TSS region transcription start site region 108568
Tssr108569 11 68386841 to 68386860 19 - TSS region transcription start site region 108569
Tssr108570 11 68386871 to 68386889 18 - TSS region transcription start site region 108570
Tssr108571 11 68386899 to 68386917 18 - TSS region transcription start site region 108571
Tssr108572 11 68386931 to 68386942 11 - TSS region transcription start site region 108572
Tssr108573 11 68386943 to 68386970 27 - TSS region transcription start site region 108573
Tssr108574 11 68386974 to 68387002 28 - TSS region transcription start site region 108574
Tssr108575 11 68387168 to 68387194 26 - TSS region transcription start site region 108575
Gm31954 11 68398479 to 68406574 8095 + lncRNA gene predicted gene, 31954
Cpgi3076 11 68399508 to 68400814 1306 CpG island CpG island 3076
Tssr108576 11 68400466 to 68400482 16 - TSS region transcription start site region 108576
Tssr108577 11 68400782 to 68400808 26 - TSS region transcription start site region 108577
Tssr108578 11 68400812 to 68400836 24 - TSS region transcription start site region 108578
Tssr108579 11 68401057 to 68401076 19 - TSS region transcription start site region 108579
Tssr108580 11 68401087 to 68401104 17 - TSS region transcription start site region 108580
Gm32046 11 68430688 to 68432038 1350 - lncRNA gene predicted gene, 32046
Tssr102293 11 68431903 to 68431916 13 + TSS region transcription start site region 102293
Tssr102294 11 68431927 to 68431947 20 + TSS region transcription start site region 102294
Tssr108581 11 68431979 to 68432005 26 - TSS region transcription start site region 108581
Tssr108582 11 68432011 to 68432032 21 - TSS region transcription start site region 108582
Tssr102295 11 68432112 to 68432170 58 + TSS region transcription start site region 102295
Pik3r5 11 68432125 to 68497849 65724 + protein coding gene phosphoinositide-3-kinase regulatory subunit 5
Cpgi3077 11 68432144 to 68432811 667 CpG island CpG island 3077
Tssr102296 11 68435983 to 68435988 5 + TSS region transcription start site region 102296
Tssr102297 11 68442620 to 68442640 20 + TSS region transcription start site region 102297
Tssr102298 11 68442789 to 68442826 37 + TSS region transcription start site region 102298
Tssr108583 11 68446004 to 68446010 6 - TSS region transcription start site region 108583
Tssr102299 11 68447558 to 68447578 20 + TSS region transcription start site region 102299
Tssr102300 11 68447597 to 68447641 44 + TSS region transcription start site region 102300
Tssr108584 11 68451363 to 68451369 6 - TSS region transcription start site region 108584
Tssr102301 11 68451636 to 68451654 18 + TSS region transcription start site region 102301
Tssr102302 11 68451673 to 68451686 13 + TSS region transcription start site region 102302
Tssr102303 11 68458384 to 68458412 28 + TSS region transcription start site region 102303
Tssr102304 11 68459527 to 68459531 4 + TSS region transcription start site region 102304
Tssr108585 11 68468270 to 68468282 12 - TSS region transcription start site region 108585
Tssr102305 11 68468529 to 68468570 41 + TSS region transcription start site region 102305
Tssr102306 11 68473816 to 68473855 39 + TSS region transcription start site region 102306
Tssr102307 11 68473856 to 68473867 11 + TSS region transcription start site region 102307
Tssr102308 11 68475401 to 68475415 14 + TSS region transcription start site region 102308
Tssr102309 11 68475431 to 68475465 34 + TSS region transcription start site region 102309
Tssr102310 11 68476307 to 68476344 37 + TSS region transcription start site region 102310
Tssr102311 11 68491957 to 68491969 12 + TSS region transcription start site region 102311
Tssr102312 11 68495395 to 68495407 12 + TSS region transcription start site region 102312
Tssr102313 11 68496450 to 68496457 7 + TSS region transcription start site region 102313
Tssr102314 11 68496501 to 68496512 11 + TSS region transcription start site region 102314
Tssr102315 11 68496526 to 68496552 26 + TSS region transcription start site region 102315
Tssr102316 11 68496565 to 68496582 17 + TSS region transcription start site region 102316
Tssr102317 11 68496612 to 68496625 13 + TSS region transcription start site region 102317
Tssr102318 11 68496648 to 68496663 15 + TSS region transcription start site region 102318
Tssr102319 11 68496684 to 68496703 19 + TSS region transcription start site region 102319
Tssr102320 11 68496707 to 68496720 13 + TSS region transcription start site region 102320
D11Mit1000 11 68500726 to 68500869 143 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 1000
Pik3r6 11 68503019 to 68552698 49679 + protein coding gene phosphoinositide-3-kinase regulatory subunit 5
Tssr102321 11 68503069 to 68503076 7 + TSS region transcription start site region 102321
Tssr102322 11 68503081 to 68503113 32 + TSS region transcription start site region 102322
Cpgi3078 11 68531421 to 68531581 160 CpG island CpG island 3078
Tssr102323 11 68534205 to 68534238 33 + TSS region transcription start site region 102323
Tssr102324 11 68539602 to 68539627 25 + TSS region transcription start site region 102324
D11Mit277 11 68551688 to 68551811 123 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 277
Cpgi3079 11 68555915 to 68556541 626 CpG island CpG island 3079
Mfsd6l 11 68556186 to 68558245 2059 + protein coding gene major facilitator superfamily domain containing 6-like
Tssr102325 11 68556309 to 68556319 10 + TSS region transcription start site region 102325
D11Mit28 11 68560360 to 68560508 148 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 28
Gm40036 11 68562235 to 68572414 10179 + lncRNA gene predicted gene, 40036
Ccdc42os 11 68583270 to 68585621 2351 - antisense lncRNA gene coiled-coil domain containing 42, opposite strand
Tssr102326 11 68586986 to 68587030 44 + TSS region transcription start site region 102326
Ccdc42 11 68587037 to 68597954 10917 + protein coding gene coiled-coil domain containing 42
Tssr102327 11 68594053 to 68594064 11 + TSS region transcription start site region 102327
D11Mit4 11 68609257 to 68609504 247 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 4
Tssr102328 11 68614218 to 68614221 3 + TSS region transcription start site region 102328
Tssr102329 11 68623873 to 68623876 3 + TSS region transcription start site region 102329
Cpgi3080 11 68691294 to 68692452 1158 CpG island CpG island 3080
Tssr108586 11 68691726 to 68691754 28 - TSS region transcription start site region 108586
Tssr102330 11 68691906 to 68691911 5 + TSS region transcription start site region 102330
Myh10 11 68691915 to 68816625 124710 + protein coding gene myosin, heavy polypeptide 10, non-muscle
Tssr102331 11 68691926 to 68691944 18 + TSS region transcription start site region 102331
Tssr102332 11 68691946 to 68691979 33 + TSS region transcription start site region 102332
Tssr102333 11 68692070 to 68692086 16 + TSS region transcription start site region 102333
Tssr102334 11 68692090 to 68692095 5 + TSS region transcription start site region 102334
Tssr102335 11 68692097 to 68692126 29 + TSS region transcription start site region 102335
Tssr102336 11 68692131 to 68692138 7 + TSS region transcription start site region 102336