Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:67252155-68112165

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156 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Myh4 11 67238029 to 67260446 22417 + protein coding gene myosin, heavy polypeptide 4, skeletal muscle
Tssr108534 11 67252596 to 67252604 8 - TSS region transcription start site region 108534
Tssr108535 11 67252692 to 67252710 18 - TSS region transcription start site region 108535
Tssr102201 11 67253475 to 67253518 43 + TSS region transcription start site region 102201
Tssr102202 11 67253997 to 67254007 10 + TSS region transcription start site region 102202
Tssr108536 11 67254044 to 67254054 10 - TSS region transcription start site region 108536
Tssr108537 11 67254056 to 67254075 19 - TSS region transcription start site region 108537
Tssr102203 11 67254057 to 67254070 13 + TSS region transcription start site region 102203
Tssr102204 11 67254455 to 67254466 11 + TSS region transcription start site region 102204
Tssr108538 11 67254558 to 67254585 27 - TSS region transcription start site region 108538
Tssr102205 11 67254673 to 67254683 10 + TSS region transcription start site region 102205
Tssr3528 11 67254733 to 67254743 10 + TSS region transcription start site region 3528
Tssr108539 11 67254766 to 67254783 17 - TSS region transcription start site region 108539
Tssr102206 11 67254777 to 67254787 10 + TSS region transcription start site region 102206
Tssr3529 11 67254789 to 67254799 10 + TSS region transcription start site region 3529
Tssr108540 11 67254826 to 67254841 15 - TSS region transcription start site region 108540
Tssr102207 11 67255421 to 67255440 19 + TSS region transcription start site region 102207
Tssr108541 11 67255435 to 67255483 48 - TSS region transcription start site region 108541
Tssr102208 11 67255591 to 67255603 12 + TSS region transcription start site region 102208
Tssr108542 11 67255596 to 67255619 23 - TSS region transcription start site region 108542
Tssr102209 11 67255626 to 67255642 16 + TSS region transcription start site region 102209
Tssr102210 11 67255644 to 67255653 9 + TSS region transcription start site region 102210
Tssr102211 11 67255654 to 67255670 16 + TSS region transcription start site region 102211
Tssr102212 11 67255676 to 67255688 12 + TSS region transcription start site region 102212
Tssr108543 11 67255711 to 67255730 19 - TSS region transcription start site region 108543
Tssr102213 11 67255828 to 67255840 12 + TSS region transcription start site region 102213
Tssr102214 11 67256184 to 67256191 7 + TSS region transcription start site region 102214
Tssr102215 11 67256198 to 67256215 17 + TSS region transcription start site region 102215
Tssr102216 11 67256242 to 67256251 9 + TSS region transcription start site region 102216
Tssr108544 11 67256294 to 67256315 21 - TSS region transcription start site region 108544
Tssr102217 11 67256396 to 67256405 9 + TSS region transcription start site region 102217
Tssr102218 11 67257107 to 67257116 9 + TSS region transcription start site region 102218
Tssr102219 11 67257194 to 67257211 17 + TSS region transcription start site region 102219
Tssr108545 11 67257226 to 67257252 26 - TSS region transcription start site region 108545
Tssr102220 11 67257233 to 67257249 16 + TSS region transcription start site region 102220
Cpgi3067 11 67258999 to 67259186 187 CpG island CpG island 3067
Myh8 11 67277124 to 67308634 31510 + protein coding gene myosin, heavy polypeptide 8, skeletal muscle, perinatal
Tssr102221 11 67277168 to 67277183 15 + TSS region transcription start site region 102221
Tssr102222 11 67277206 to 67277223 17 + TSS region transcription start site region 102222
Tssr102223 11 67278826 to 67278850 24 + TSS region transcription start site region 102223
Tssr108546 11 67279031 to 67279048 17 - TSS region transcription start site region 108546
n-TPtgg2 11 67291139 to 67291210 71 + tRNA gene nuclear encoded tRNA proline 2 (anticodon TGG)
Tssr102224 11 67292425 to 67292430 5 + TSS region transcription start site region 102224
Tssr3530 11 67292900 to 67292916 16 + TSS region transcription start site region 3530
Tssr102225 11 67292929 to 67292946 17 + TSS region transcription start site region 102225
Tssr3531 11 67294511 to 67294518 7 + TSS region transcription start site region 3531
Tssr102226 11 67294549 to 67294564 15 + TSS region transcription start site region 102226
Tssr108547 11 67297743 to 67297751 8 - TSS region transcription start site region 108547
Tssr102227 11 67298465 to 67298480 15 + TSS region transcription start site region 102227
Cpgi3068 11 67298471 to 67298730 259 CpG island CpG island 3068
Tssr108548 11 67298496 to 67298533 37 - TSS region transcription start site region 108548
Tssr108549 11 67299322 to 67299360 38 - TSS region transcription start site region 108549
Tssr102228 11 67299327 to 67299365 38 + TSS region transcription start site region 102228
Tssr102229 11 67301716 to 67301728 12 + TSS region transcription start site region 102229
Tssr102230 11 67301767 to 67301779 12 + TSS region transcription start site region 102230
Tssr108550 11 67301994 to 67302039 45 - TSS region transcription start site region 108550
Tssr102231 11 67305679 to 67305707 28 + TSS region transcription start site region 102231
Tssr102232 11 67308569 to 67308596 27 + TSS region transcription start site region 102232
Tssr102233 11 67321638 to 67321648 10 + TSS region transcription start site region 102233
Tssr102234 11 67321778 to 67321783 5 + TSS region transcription start site region 102234
Myh13 11 67327103 to 67371502 44399 + protein coding gene myosin, heavy polypeptide 13, skeletal muscle
Tssr102235 11 67344779 to 67344807 28 + TSS region transcription start site region 102235
Gm40029 11 67348920 to 67350271 1351 - lncRNA gene predicted gene, 40029
Gm26476 11 67364090 to 67364402 312 + unclassified non-coding RNA gene predicted gene, 26476
Tssr108551 11 67379773 to 67379786 13 - TSS region transcription start site region 108551
Tssr102236 11 67384803 to 67384805 2 + TSS region transcription start site region 102236
Gm31459 11 67435740 to 67435922 182 - pseudogene predicted gene, 31459
Cpgi3069 11 67454628 to 67456231 1603 CpG island CpG island 3069
Tssr102237 11 67454963 to 67454980 17 + TSS region transcription start site region 102237
Tssr102238 11 67455068 to 67455156 88 + TSS region transcription start site region 102238
Tssr102239 11 67455339 to 67455403 64 + TSS region transcription start site region 102239
Gas7 11 67455437 to 67688990 233553 + protein coding gene growth arrest specific 7
Tssr102240 11 67479761 to 67479774 13 + TSS region transcription start site region 102240
Tssr102241 11 67492317 to 67492338 21 + TSS region transcription start site region 102241
Tssr108552 11 67500968 to 67501006 38 - TSS region transcription start site region 108552
D11Mit351 11 67517049 to 67517157 108 DNA segment DNA Segment, Chr 11 Massachusetts Institute of Technology 351
Tssr102242 11 67532448 to 67532476 28 + TSS region transcription start site region 102242
Tssr102243 11 67533038 to 67533059 21 + TSS region transcription start site region 102243
Tssr102244 11 67533075 to 67533091 16 + TSS region transcription start site region 102244
Tssr102245 11 67559831 to 67559834 3 + TSS region transcription start site region 102245
Tssr102246 11 67564476 to 67564487 11 + TSS region transcription start site region 102246
Tssr102247 11 67571215 to 67571267 52 + TSS region transcription start site region 102247
Gm12301 11 67571622 to 67577466 5844 - antisense lncRNA gene predicted gene 12301
Tssr108553 11 67581934 to 67581942 8 - TSS region transcription start site region 108553
Tssr102248 11 67586520 to 67586546 26 + TSS region transcription start site region 102248
Tssr102249 11 67586552 to 67586563 11 + TSS region transcription start site region 102249
Tssr102250 11 67586592 to 67586601 9 + TSS region transcription start site region 102250
Tssr102251 11 67586609 to 67586618 9 + TSS region transcription start site region 102251
Tssr102252 11 67586625 to 67586634 9 + TSS region transcription start site region 102252
Tssr102253 11 67586644 to 67586662 18 + TSS region transcription start site region 102253
Tssr102254 11 67586675 to 67586720 45 + TSS region transcription start site region 102254
Tssr102255 11 67586750 to 67586761 11 + TSS region transcription start site region 102255
Tssr108554 11 67589162 to 67589164 2 - TSS region transcription start site region 108554
Tssr102256 11 67596521 to 67596573 52 + TSS region transcription start site region 102256
Tssr102257 11 67596614 to 67596621 7 + TSS region transcription start site region 102257
Tssr102258 11 67596627 to 67596636 9 + TSS region transcription start site region 102258
Tssr102259 11 67613785 to 67613797 12 + TSS region transcription start site region 102259
Tssr102260 11 67617150 to 67617167 17 + TSS region transcription start site region 102260
Tssr102261 11 67617168 to 67617192 24 + TSS region transcription start site region 102261
D11Mit297 11 67624967 to 67625091 124 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 297
D11Mit115 11 67639172 to 67639268 96 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 115
Tssr102262 11 67643297 to 67643317 20 + TSS region transcription start site region 102262
Tssr102263 11 67646594 to 67646607 13 + TSS region transcription start site region 102263
Tssr102264 11 67652479 to 67652495 16 + TSS region transcription start site region 102264
Tssr102265 11 67652548 to 67652563 15 + TSS region transcription start site region 102265
Tssr102266 11 67652574 to 67652594 20 + TSS region transcription start site region 102266
Tssr102267 11 67652598 to 67652637 39 + TSS region transcription start site region 102267
Tssr102268 11 67652642 to 67652653 11 + TSS region transcription start site region 102268
Tssr102269 11 67652717 to 67652766 49 + TSS region transcription start site region 102269
Tssr102270 11 67652835 to 67652858 23 + TSS region transcription start site region 102270
Tssr102271 11 67656045 to 67656065 20 + TSS region transcription start site region 102271
Glp2r 11 67663784 to 67771153 107369 - protein coding gene glucagon-like peptide 2 receptor
Tssr102272 11 67682155 to 67682165 10 + TSS region transcription start site region 102272
Tssr102273 11 67682525 to 67682535 10 + TSS region transcription start site region 102273
Tssr102274 11 67683506 to 67683531 25 + TSS region transcription start site region 102274
Tssr102275 11 67683888 to 67683909 21 + TSS region transcription start site region 102275
Tssr102276 11 67684198 to 67684223 25 + TSS region transcription start site region 102276
Tssr102277 11 67684612 to 67684635 23 + TSS region transcription start site region 102277
Tssr102278 11 67684675 to 67684687 12 + TSS region transcription start site region 102278
Tssr102279 11 67685049 to 67685064 15 + TSS region transcription start site region 102279
Tssr102280 11 67686644 to 67686656 12 + TSS region transcription start site region 102280
Tssr102281 11 67687132 to 67687139 7 + TSS region transcription start site region 102281
Cpgi3070 11 67695069 to 67695845 776 CpG island CpG island 3070
Tssr108555 11 67695209 to 67695224 15 - TSS region transcription start site region 108555
Tssr102282 11 67695314 to 67695326 12 + TSS region transcription start site region 102282
Rcvrn 11 67695326 to 67703333 8007 + protein coding gene recoverin
Tssr102283 11 67695334 to 67695376 42 + TSS region transcription start site region 102283
Tssr3532 11 67695401 to 67695406 5 + TSS region transcription start site region 3532
Tssr108556 11 67771115 to 67771134 19 - TSS region transcription start site region 108556
Gsg1l2 11 67774608 to 67789898 15290 + protein coding gene GSG1-like 2
Tssr102284 11 67798250 to 67798259 9 + TSS region transcription start site region 102284
Tssr102285 11 67798269 to 67798286 17 + TSS region transcription start site region 102285
Dhrs7c 11 67798271 to 67816002 17731 + protein coding gene dehydrogenase/reductase (SDR family) member 7C
Tssr102286 11 67798290 to 67798298 8 + TSS region transcription start site region 102286
Gm40032 11 67817882 to 67844519 26637 - lncRNA gene predicted gene, 40032
Usp43 11 67854523 to 67922153 67630 - protein coding gene ubiquitin specific peptidase 43
Cpgi3071 11 67921094 to 67922659 1565 CpG island CpG island 3071
9130017K11Rik 11 67921504 to 67947659 26155 + unclassified non-coding RNA gene RIKEN cDNA 9130017K11 gene
Tssr108557 11 67922136 to 67922158 22 - TSS region transcription start site region 108557
Tssr108558 11 67922160 to 67922188 28 - TSS region transcription start site region 108558
Tssr102287 11 67922370 to 67922387 17 + TSS region transcription start site region 102287
Cfap52 11 67924806 to 67965651 40845 - protein coding gene cilia and flagella associated protein 52
Cpgi3072 11 67965434 to 67965679 245 CpG island CpG island 3072
Tssr108559 11 67965606 to 67965630 24 - TSS region transcription start site region 108559
Tssr108560 11 67965631 to 67965663 32 - TSS region transcription start site region 108560
Cpgi3073 11 67966324 to 67966593 269 CpG island CpG island 3073
Stx8 11 67966411 to 68207148 240737 + protein coding gene syntaxin 8
Tssr102288 11 67966442 to 67966497 55 + TSS region transcription start site region 102288
Tssr102289 11 67975531 to 67975537 6 + TSS region transcription start site region 102289
Tssr102290 11 67980492 to 67980496 4 + TSS region transcription start site region 102290
Gm12303 11 68035038 to 68035710 672 - pseudogene predicted gene 12303
Gm26157 11 68053335 to 68053460 125 + rRNA gene predicted gene, 26157
D11Mit27.1 11 68056535 to 68056675 140 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 27.1
D11Mit27 11 68056690 to 68056791 101 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 27
Gm12304 11 68095580 to 68095964 384 - pseudogene predicted gene 12304
Tssr108561 11 68095979 to 68095991 12 - TSS region transcription start site region 108561