Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:66671534-67241557

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Orgwq8 11 17106175 to 67187585 50081410 QTL organ weight QTL 8
Blmpf2 11 54174844 to 67187585 13012741 QTL bleomycin-induced pulmonary fibrosis 2
Gm12298 11 66905721 to 66947086 41365 - antisense lncRNA gene predicted gene 12298
Gm29712 11 66907552 to 66908454 902 + pseudogene predicted gene, 29712
D11Mit209 11 66909174 to 66909268 94 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 209
Pirt 11 66911981 to 66929876 17895 + protein coding gene phosphoinositide-interacting regulator of transient receptor potential channels
Tssr102134 11 66911983 to 66912003 20 + TSS region transcription start site region 102134
Tssr102135 11 66912004 to 66912044 40 + TSS region transcription start site region 102135
Tssr102136 11 66912052 to 66912071 19 + TSS region transcription start site region 102136
Tssr102137 11 66955088 to 66955102 14 + TSS region transcription start site region 102137
Tssr102138 11 66956480 to 66956489 9 + TSS region transcription start site region 102138
Tssr102139 11 66956508 to 66956525 17 + TSS region transcription start site region 102139
Tssr102140 11 66956534 to 66956557 23 + TSS region transcription start site region 102140
Tssr102141 11 66956565 to 66956575 10 + TSS region transcription start site region 102141
Tssr3522 11 66956592 to 66956597 5 + TSS region transcription start site region 3522
Tssr102142 11 66956620 to 66956667 47 + TSS region transcription start site region 102142
Tmem238l 11 66956638 to 66965014 8376 + protein coding gene transmembrane protein 238 like
Tssr102143 11 66956682 to 66956693 11 + TSS region transcription start site region 102143
Tssr102144 11 66956697 to 66956704 7 + TSS region transcription start site region 102144
Tssr102145 11 66957894 to 66957918 24 + TSS region transcription start site region 102145
Tssr102146 11 66957922 to 66957937 15 + TSS region transcription start site region 102146
Tssr102147 11 66957938 to 66957976 38 + TSS region transcription start site region 102147
Gm12299 11 67002086 to 67011625 9539 + unclassified non-coding RNA gene predicted gene 12299
Tssr102148 11 67010627 to 67010638 11 + TSS region transcription start site region 102148
Tssr108503 11 67011652 to 67011665 13 - TSS region transcription start site region 108503
Tssr108504 11 67011722 to 67011739 17 - TSS region transcription start site region 108504
Tssr102149 11 67023547 to 67023555 8 + TSS region transcription start site region 102149
Cpgi3061 11 67024936 to 67025437 501 CpG island CpG island 3061
Tssr102150 11 67025144 to 67025179 35 + TSS region transcription start site region 102150
Tmem220 11 67025154 to 67035312 10158 + protein coding gene transmembrane protein 220
C330020G15Rik 11 67035503 to 67036985 1482 unclassified gene RIKEN cDNA C330020G15 gene
Adprm 11 67037905 to 67052594 14689 - protein coding gene ADP-ribose/CDP-alcohol diphosphatase, manganese dependent
Tssr108505 11 67051742 to 67051775 33 - TSS region transcription start site region 108505
Cpgi3062 11 67052360 to 67053064 704 CpG island CpG island 3062
Tssr108506 11 67052563 to 67052618 55 - TSS region transcription start site region 108506
Tssr108507 11 67052640 to 67052651 11 - TSS region transcription start site region 108507
Tssr102151 11 67052641 to 67052708 67 + TSS region transcription start site region 102151
Sco1 11 67052670 to 67067070 14400 + protein coding gene SCO1 cytochrome c oxidase assembly protein
Tssr102152 11 67052710 to 67052721 11 + TSS region transcription start site region 102152
Tssr102153 11 67064750 to 67064771 21 + TSS region transcription start site region 102153
Tssr102154 11 67078293 to 67078307 14 + TSS region transcription start site region 102154
Myh3 11 67078300 to 67102291 23991 + protein coding gene myosin, heavy polypeptide 3, skeletal muscle, embryonic
Cpgi3063 11 67083740 to 67084263 523 CpG island CpG island 3063
Tssr3523 11 67090360 to 67090370 10 + TSS region transcription start site region 3523
Tssr102155 11 67092073 to 67092088 15 + TSS region transcription start site region 102155
Cpgi3064 11 67094473 to 67094925 452 CpG island CpG island 3064
Tssr102156 11 67097894 to 67097948 54 + TSS region transcription start site region 102156
Tssr102157 11 67098568 to 67098581 13 + TSS region transcription start site region 102157
Mir6923 11 67099804 to 67099875 71 + miRNA gene microRNA 6923
Cpgi3065 11 67107275 to 67107470 195 CpG island CpG island 3065
2310065F04Rik 11 67112461 to 67120080 7619 - lincRNA gene RIKEN cDNA 2310065F04 gene
Cpgi3066 11 67113119 to 67113288 169 CpG island CpG island 3066
Tssr108508 11 67113438 to 67113474 36 - TSS region transcription start site region 108508
Tssr108509 11 67114788 to 67114793 5 - TSS region transcription start site region 108509
Tssr108510 11 67114826 to 67114831 5 - TSS region transcription start site region 108510
Tssr108511 11 67114882 to 67114889 7 - TSS region transcription start site region 108511
Tssr108512 11 67114908 to 67114927 19 - TSS region transcription start site region 108512
Tssr108513 11 67114940 to 67114952 12 - TSS region transcription start site region 108513
Tssr108514 11 67116818 to 67116826 8 - TSS region transcription start site region 108514
Tssr108515 11 67116831 to 67116845 14 - TSS region transcription start site region 108515
D11Mit89 11 67126005 to 67126153 148 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 89
Gm31285 11 67134937 to 67143944 9007 - lncRNA gene predicted gene, 31285
Tssr108516 11 67140970 to 67140994 24 - TSS region transcription start site region 108516
Tssr3524 11 67171011 to 67171040 29 + TSS region transcription start site region 3524
Myh2 11 67171027 to 67197517 26490 + protein coding gene myosin, heavy polypeptide 2, skeletal muscle, adult
Tssr102158 11 67171059 to 67171071 12 + TSS region transcription start site region 102158
Tssr102159 11 67171095 to 67171112 17 + TSS region transcription start site region 102159
Ssta4 11 67187365 to 67187585 220 QTL susceptibility to Salmonella typhimurium antigens 4
D11Mit5 11 67187365 to 67187585 220 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 5
Ity2b 11 67187365 to 79923086 12735721 QTL immunity to S. typhimurium 2b
9430073C21Rik 11 67195680 to 67199234 3554 - antisense lncRNA gene Riken cDNA 9430073C21 gene
Tssr102160 11 67200091 to 67200107 16 + TSS region transcription start site region 102160
Myh1 11 67200109 to 67224575 24466 + protein coding gene myosin, heavy polypeptide 1, skeletal muscle, adult
Tssr102161 11 67200137 to 67200148 11 + TSS region transcription start site region 102161
Tssr102162 11 67201743 to 67201754 11 + TSS region transcription start site region 102162
Tssr108517 11 67215946 to 67215957 11 - TSS region transcription start site region 108517
Tssr102163 11 67219697 to 67219708 11 + TSS region transcription start site region 102163
Myhas 11 67224681 to 67237573 12892 - antisense lncRNA gene myosin heavy chain gene antisense RNA
Tssr102164 11 67236185 to 67236196 11 + TSS region transcription start site region 102164
Tssr102165 11 67236204 to 67236211 7 + TSS region transcription start site region 102165
Tssr108518 11 67237451 to 67237457 6 - TSS region transcription start site region 108518
Tssr108519 11 67237571 to 67237609 38 - TSS region transcription start site region 108519
Tssr102166 11 67237764 to 67237776 12 + TSS region transcription start site region 102166
Tssr102167 11 67237800 to 67237818 18 + TSS region transcription start site region 102167
Tssr102168 11 67237852 to 67237864 12 + TSS region transcription start site region 102168
Tssr102169 11 67238017 to 67238047 30 + TSS region transcription start site region 102169
Myh4 11 67238029 to 67260446 22417 + protein coding gene myosin, heavy polypeptide 4, skeletal muscle
Tssr102170 11 67240557 to 67240605 48 + TSS region transcription start site region 102170
Tssr108520 11 67240774 to 67240794 20 - TSS region transcription start site region 108520
Tssr102171 11 67240911 to 67240946 35 + TSS region transcription start site region 102171