Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:66432451-68042457

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296 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Orgwq8 11 17106175 to 67187585 50081410 QTL organ weight QTL 8
Blmpf2 11 54174844 to 67187585 13012741 QTL bleomycin-induced pulmonary fibrosis 2
Shisa6 11 66211725 to 66525964 314239 - protein coding gene shisa family member 6
Cpgi3060 11 66525114 to 66527255 2141 CpG island CpG island 3060
Tssr108498 11 66526571 to 66526582 11 - TSS region transcription start site region 108498
Tssr108499 11 66526617 to 66526628 11 - TSS region transcription start site region 108499
Tssr108500 11 66526635 to 66526703 68 - TSS region transcription start site region 108500
Tssr108501 11 66526710 to 66526734 24 - TSS region transcription start site region 108501
Tssr108502 11 66526986 to 66527018 32 - TSS region transcription start site region 108502
Gm40028 11 66547785 to 66556312 8527 + lncRNA gene predicted gene, 40028
D11Mit113 11 66550163 to 66550307 144 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 113
Tssr3521 11 66563535 to 66563540 5 + TSS region transcription start site region 3521
Gm12297 11 66563607 to 66564585 978 + pseudogene predicted gene 12297
Gm12298 11 66905721 to 66947086 41365 - antisense lncRNA gene predicted gene 12298
Gm29712 11 66907552 to 66908454 902 + pseudogene predicted gene, 29712
D11Mit209 11 66909174 to 66909268 94 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 209
Pirt 11 66911981 to 66929876 17895 + protein coding gene phosphoinositide-interacting regulator of transient receptor potential channels
Tssr102134 11 66911983 to 66912003 20 + TSS region transcription start site region 102134
Tssr102135 11 66912004 to 66912044 40 + TSS region transcription start site region 102135
Tssr102136 11 66912052 to 66912071 19 + TSS region transcription start site region 102136
Tssr102137 11 66955088 to 66955102 14 + TSS region transcription start site region 102137
Tssr102138 11 66956480 to 66956489 9 + TSS region transcription start site region 102138
Tssr102139 11 66956508 to 66956525 17 + TSS region transcription start site region 102139
Tssr102140 11 66956534 to 66956557 23 + TSS region transcription start site region 102140
Tssr102141 11 66956565 to 66956575 10 + TSS region transcription start site region 102141
Tssr3522 11 66956592 to 66956597 5 + TSS region transcription start site region 3522
Tssr102142 11 66956620 to 66956667 47 + TSS region transcription start site region 102142
Tmem238l 11 66956638 to 66965014 8376 + protein coding gene transmembrane protein 238 like
Tssr102143 11 66956682 to 66956693 11 + TSS region transcription start site region 102143
Tssr102144 11 66956697 to 66956704 7 + TSS region transcription start site region 102144
Tssr102145 11 66957894 to 66957918 24 + TSS region transcription start site region 102145
Tssr102146 11 66957922 to 66957937 15 + TSS region transcription start site region 102146
Tssr102147 11 66957938 to 66957976 38 + TSS region transcription start site region 102147
Gm12299 11 67002086 to 67011625 9539 + unclassified non-coding RNA gene predicted gene 12299
Tssr102148 11 67010627 to 67010638 11 + TSS region transcription start site region 102148
Tssr108503 11 67011652 to 67011665 13 - TSS region transcription start site region 108503
Tssr108504 11 67011722 to 67011739 17 - TSS region transcription start site region 108504
Tssr102149 11 67023547 to 67023555 8 + TSS region transcription start site region 102149
Cpgi3061 11 67024936 to 67025437 501 CpG island CpG island 3061
Tssr102150 11 67025144 to 67025179 35 + TSS region transcription start site region 102150
Tmem220 11 67025154 to 67035312 10158 + protein coding gene transmembrane protein 220
C330020G15Rik 11 67035503 to 67036985 1482 unclassified gene RIKEN cDNA C330020G15 gene
Adprm 11 67037905 to 67052594 14689 - protein coding gene ADP-ribose/CDP-alcohol diphosphatase, manganese dependent
Tssr108505 11 67051742 to 67051775 33 - TSS region transcription start site region 108505
Cpgi3062 11 67052360 to 67053064 704 CpG island CpG island 3062
Tssr108506 11 67052563 to 67052618 55 - TSS region transcription start site region 108506
Tssr108507 11 67052640 to 67052651 11 - TSS region transcription start site region 108507
Tssr102151 11 67052641 to 67052708 67 + TSS region transcription start site region 102151
Sco1 11 67052670 to 67067070 14400 + protein coding gene SCO1 cytochrome c oxidase assembly protein
Tssr102152 11 67052710 to 67052721 11 + TSS region transcription start site region 102152
Tssr102153 11 67064750 to 67064771 21 + TSS region transcription start site region 102153
Tssr102154 11 67078293 to 67078307 14 + TSS region transcription start site region 102154
Myh3 11 67078300 to 67102291 23991 + protein coding gene myosin, heavy polypeptide 3, skeletal muscle, embryonic
Cpgi3063 11 67083740 to 67084263 523 CpG island CpG island 3063
Tssr3523 11 67090360 to 67090370 10 + TSS region transcription start site region 3523
Tssr102155 11 67092073 to 67092088 15 + TSS region transcription start site region 102155
Cpgi3064 11 67094473 to 67094925 452 CpG island CpG island 3064
Tssr102156 11 67097894 to 67097948 54 + TSS region transcription start site region 102156
Tssr102157 11 67098568 to 67098581 13 + TSS region transcription start site region 102157
Mir6923 11 67099804 to 67099875 71 + miRNA gene microRNA 6923
Cpgi3065 11 67107275 to 67107470 195 CpG island CpG island 3065
2310065F04Rik 11 67112461 to 67120080 7619 - lincRNA gene RIKEN cDNA 2310065F04 gene
Cpgi3066 11 67113119 to 67113288 169 CpG island CpG island 3066
Tssr108508 11 67113438 to 67113474 36 - TSS region transcription start site region 108508
Tssr108509 11 67114788 to 67114793 5 - TSS region transcription start site region 108509
Tssr108510 11 67114826 to 67114831 5 - TSS region transcription start site region 108510
Tssr108511 11 67114882 to 67114889 7 - TSS region transcription start site region 108511
Tssr108512 11 67114908 to 67114927 19 - TSS region transcription start site region 108512
Tssr108513 11 67114940 to 67114952 12 - TSS region transcription start site region 108513
Tssr108514 11 67116818 to 67116826 8 - TSS region transcription start site region 108514
Tssr108515 11 67116831 to 67116845 14 - TSS region transcription start site region 108515
D11Mit89 11 67126005 to 67126153 148 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 89
Gm31285 11 67134937 to 67143944 9007 - lncRNA gene predicted gene, 31285
Tssr108516 11 67140970 to 67140994 24 - TSS region transcription start site region 108516
Tssr3524 11 67171011 to 67171040 29 + TSS region transcription start site region 3524
Myh2 11 67171027 to 67197517 26490 + protein coding gene myosin, heavy polypeptide 2, skeletal muscle, adult
Tssr102158 11 67171059 to 67171071 12 + TSS region transcription start site region 102158
Tssr102159 11 67171095 to 67171112 17 + TSS region transcription start site region 102159
D11Mit5 11 67187365 to 67187585 220 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 5
Ssta4 11 67187365 to 67187585 220 QTL susceptibility to Salmonella typhimurium antigens 4
Ity2b 11 67187365 to 79923086 12735721 QTL immunity to S. typhimurium 2b
9430073C21Rik 11 67195680 to 67199234 3554 - antisense lncRNA gene Riken cDNA 9430073C21 gene
Tssr102160 11 67200091 to 67200107 16 + TSS region transcription start site region 102160
Myh1 11 67200109 to 67224575 24466 + protein coding gene myosin, heavy polypeptide 1, skeletal muscle, adult
Tssr102161 11 67200137 to 67200148 11 + TSS region transcription start site region 102161
Tssr102162 11 67201743 to 67201754 11 + TSS region transcription start site region 102162
Tssr108517 11 67215946 to 67215957 11 - TSS region transcription start site region 108517
Tssr102163 11 67219697 to 67219708 11 + TSS region transcription start site region 102163
Myhas 11 67224681 to 67237573 12892 - antisense lncRNA gene myosin heavy chain gene antisense RNA
Tssr102164 11 67236185 to 67236196 11 + TSS region transcription start site region 102164
Tssr102165 11 67236204 to 67236211 7 + TSS region transcription start site region 102165
Tssr108518 11 67237451 to 67237457 6 - TSS region transcription start site region 108518
Tssr108519 11 67237571 to 67237609 38 - TSS region transcription start site region 108519
Tssr102166 11 67237764 to 67237776 12 + TSS region transcription start site region 102166
Tssr102167 11 67237800 to 67237818 18 + TSS region transcription start site region 102167
Tssr102168 11 67237852 to 67237864 12 + TSS region transcription start site region 102168
Tssr102169 11 67238017 to 67238047 30 + TSS region transcription start site region 102169
Myh4 11 67238029 to 67260446 22417 + protein coding gene myosin, heavy polypeptide 4, skeletal muscle
Tssr102170 11 67240557 to 67240605 48 + TSS region transcription start site region 102170
Tssr108520 11 67240774 to 67240794 20 - TSS region transcription start site region 108520
Tssr102171 11 67240911 to 67240946 35 + TSS region transcription start site region 102171
Tssr102172 11 67242809 to 67242818 9 + TSS region transcription start site region 102172
Tssr102173 11 67242826 to 67242837 11 + TSS region transcription start site region 102173
Tssr108521 11 67242834 to 67242837 3 - TSS region transcription start site region 108521
Tssr108522 11 67243042 to 67243087 45 - TSS region transcription start site region 108522
Tssr102174 11 67243223 to 67243226 3 + TSS region transcription start site region 102174
Tssr102175 11 67243259 to 67243289 30 + TSS region transcription start site region 102175
Tssr102176 11 67243423 to 67243444 21 + TSS region transcription start site region 102176
Tssr102177 11 67243449 to 67243463 14 + TSS region transcription start site region 102177
Tssr108523 11 67243457 to 67243466 9 - TSS region transcription start site region 108523
Tssr108524 11 67243473 to 67243493 20 - TSS region transcription start site region 108524
Tssr102178 11 67244637 to 67244649 12 + TSS region transcription start site region 102178
Tssr108525 11 67244703 to 67244726 23 - TSS region transcription start site region 108525
Tssr102179 11 67245431 to 67245468 37 + TSS region transcription start site region 102179
Tssr102180 11 67245769 to 67245783 14 + TSS region transcription start site region 102180
Tssr102181 11 67248561 to 67248567 6 + TSS region transcription start site region 102181
Tssr3525 11 67248577 to 67248588 11 + TSS region transcription start site region 3525
Tssr108526 11 67248651 to 67248674 23 - TSS region transcription start site region 108526
Tssr102182 11 67248682 to 67248693 11 + TSS region transcription start site region 102182
Tssr108527 11 67249253 to 67249272 19 - TSS region transcription start site region 108527
Tssr102183 11 67249257 to 67249266 9 + TSS region transcription start site region 102183
Tssr102184 11 67249825 to 67249833 8 + TSS region transcription start site region 102184
Tssr102185 11 67249855 to 67249866 11 + TSS region transcription start site region 102185
Tssr102186 11 67250004 to 67250013 9 + TSS region transcription start site region 102186
Tssr102187 11 67250039 to 67250051 12 + TSS region transcription start site region 102187
Tssr102188 11 67250313 to 67250338 25 + TSS region transcription start site region 102188
Tssr3526 11 67250363 to 67250377 14 + TSS region transcription start site region 3526
Tssr102189 11 67250506 to 67250526 20 + TSS region transcription start site region 102189
Tssr102190 11 67250533 to 67250542 9 + TSS region transcription start site region 102190
Tssr102191 11 67250544 to 67250563 19 + TSS region transcription start site region 102191
Tssr102192 11 67250564 to 67250569 5 + TSS region transcription start site region 102192
Tssr102193 11 67250605 to 67250612 7 + TSS region transcription start site region 102193
Tssr108528 11 67250629 to 67250644 15 - TSS region transcription start site region 108528
Tssr102194 11 67250747 to 67250754 7 + TSS region transcription start site region 102194
Tssr102195 11 67250827 to 67250837 10 + TSS region transcription start site region 102195
Tssr102196 11 67250865 to 67250876 11 + TSS region transcription start site region 102196
Tssr3527 11 67250873 to 67250877 4 - TSS region transcription start site region 3527
Tssr102197 11 67250893 to 67250920 27 + TSS region transcription start site region 102197
Tssr108529 11 67250937 to 67250958 21 - TSS region transcription start site region 108529
Tssr108530 11 67250959 to 67250960 1 - TSS region transcription start site region 108530
Tssr108531 11 67250962 to 67250988 26 - TSS region transcription start site region 108531
Tssr102198 11 67250971 to 67250981 10 + TSS region transcription start site region 102198
Tssr102199 11 67251699 to 67251735 36 + TSS region transcription start site region 102199
Tssr108532 11 67251736 to 67251758 22 - TSS region transcription start site region 108532
Tssr102200 11 67251850 to 67251886 36 + TSS region transcription start site region 102200
Tssr108533 11 67251897 to 67251910 13 - TSS region transcription start site region 108533
Tssr108534 11 67252596 to 67252604 8 - TSS region transcription start site region 108534
Tssr108535 11 67252692 to 67252710 18 - TSS region transcription start site region 108535
Tssr102201 11 67253475 to 67253518 43 + TSS region transcription start site region 102201
Tssr102202 11 67253997 to 67254007 10 + TSS region transcription start site region 102202
Tssr108536 11 67254044 to 67254054 10 - TSS region transcription start site region 108536
Tssr108537 11 67254056 to 67254075 19 - TSS region transcription start site region 108537
Tssr102203 11 67254057 to 67254070 13 + TSS region transcription start site region 102203
Tssr102204 11 67254455 to 67254466 11 + TSS region transcription start site region 102204
Tssr108538 11 67254558 to 67254585 27 - TSS region transcription start site region 108538
Tssr102205 11 67254673 to 67254683 10 + TSS region transcription start site region 102205
Tssr3528 11 67254733 to 67254743 10 + TSS region transcription start site region 3528
Tssr108539 11 67254766 to 67254783 17 - TSS region transcription start site region 108539
Tssr102206 11 67254777 to 67254787 10 + TSS region transcription start site region 102206
Tssr3529 11 67254789 to 67254799 10 + TSS region transcription start site region 3529
Tssr108540 11 67254826 to 67254841 15 - TSS region transcription start site region 108540
Tssr102207 11 67255421 to 67255440 19 + TSS region transcription start site region 102207
Tssr108541 11 67255435 to 67255483 48 - TSS region transcription start site region 108541
Tssr102208 11 67255591 to 67255603 12 + TSS region transcription start site region 102208
Tssr108542 11 67255596 to 67255619 23 - TSS region transcription start site region 108542
Tssr102209 11 67255626 to 67255642 16 + TSS region transcription start site region 102209
Tssr102210 11 67255644 to 67255653 9 + TSS region transcription start site region 102210
Tssr102211 11 67255654 to 67255670 16 + TSS region transcription start site region 102211
Tssr102212 11 67255676 to 67255688 12 + TSS region transcription start site region 102212
Tssr108543 11 67255711 to 67255730 19 - TSS region transcription start site region 108543
Tssr102213 11 67255828 to 67255840 12 + TSS region transcription start site region 102213
Tssr102214 11 67256184 to 67256191 7 + TSS region transcription start site region 102214
Tssr102215 11 67256198 to 67256215 17 + TSS region transcription start site region 102215
Tssr102216 11 67256242 to 67256251 9 + TSS region transcription start site region 102216
Tssr108544 11 67256294 to 67256315 21 - TSS region transcription start site region 108544
Tssr102217 11 67256396 to 67256405 9 + TSS region transcription start site region 102217
Tssr102218 11 67257107 to 67257116 9 + TSS region transcription start site region 102218
Tssr102219 11 67257194 to 67257211 17 + TSS region transcription start site region 102219
Tssr108545 11 67257226 to 67257252 26 - TSS region transcription start site region 108545
Tssr102220 11 67257233 to 67257249 16 + TSS region transcription start site region 102220
Cpgi3067 11 67258999 to 67259186 187 CpG island CpG island 3067
Myh8 11 67277124 to 67308634 31510 + protein coding gene myosin, heavy polypeptide 8, skeletal muscle, perinatal
Tssr102221 11 67277168 to 67277183 15 + TSS region transcription start site region 102221
Tssr102222 11 67277206 to 67277223 17 + TSS region transcription start site region 102222
Tssr102223 11 67278826 to 67278850 24 + TSS region transcription start site region 102223
Tssr108546 11 67279031 to 67279048 17 - TSS region transcription start site region 108546
n-TPtgg2 11 67291139 to 67291210 71 + tRNA gene nuclear encoded tRNA proline 2 (anticodon TGG)
Tssr102224 11 67292425 to 67292430 5 + TSS region transcription start site region 102224
Tssr3530 11 67292900 to 67292916 16 + TSS region transcription start site region 3530
Tssr102225 11 67292929 to 67292946 17 + TSS region transcription start site region 102225
Tssr3531 11 67294511 to 67294518 7 + TSS region transcription start site region 3531
Tssr102226 11 67294549 to 67294564 15 + TSS region transcription start site region 102226
Tssr108547 11 67297743 to 67297751 8 - TSS region transcription start site region 108547
Tssr102227 11 67298465 to 67298480 15 + TSS region transcription start site region 102227
Cpgi3068 11 67298471 to 67298730 259 CpG island CpG island 3068
Tssr108548 11 67298496 to 67298533 37 - TSS region transcription start site region 108548
Tssr108549 11 67299322 to 67299360 38 - TSS region transcription start site region 108549
Tssr102228 11 67299327 to 67299365 38 + TSS region transcription start site region 102228
Tssr102229 11 67301716 to 67301728 12 + TSS region transcription start site region 102229
Tssr102230 11 67301767 to 67301779 12 + TSS region transcription start site region 102230