Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:6567650-7827656

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110 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ccm2 11 6546887 to 6596744 49857 + protein coding gene cerebral cavernous malformation 2
Tssr100276 11 6588227 to 6588231 4 + TSS region transcription start site region 100276
Tssr100277 11 6588979 to 6588980 1 + TSS region transcription start site region 100277
Nacad 11 6597823 to 6606053 8230 - protein coding gene NAC alpha domain containing
Cpgi2563 11 6598946 to 6599275 329 CpG island CpG island 2563
Tssr106743 11 6599435 to 6599445 10 - TSS region transcription start site region 106743
Cpgi2564 11 6605163 to 6606131 968 CpG island CpG island 2564
Tssr106744 11 6605571 to 6605642 71 - TSS region transcription start site region 106744
Tssr106745 11 6605661 to 6605670 9 - TSS region transcription start site region 106745
Tbrg4 11 6615598 to 6626067 10469 - protein coding gene transforming growth factor beta regulated gene 4
Gm24313 11 6619808 to 6619940 132 - snoRNA gene predicted gene, 24313
Snora5c 11 6620319 to 6620419 100 - snoRNA gene small nucleolar RNA, H/ACA box 5C
Tssr106746 11 6623980 to 6623991 11 - TSS region transcription start site region 106746
Tssr106747 11 6624230 to 6624263 33 - TSS region transcription start site region 106747
Cpgi2565 11 6625645 to 6626540 895 CpG island CpG island 2565
Tssr106748 11 6625785 to 6625796 11 - TSS region transcription start site region 106748
Tssr106749 11 6625805 to 6625822 17 - TSS region transcription start site region 106749
Tssr106750 11 6626030 to 6626072 42 - TSS region transcription start site region 106750
Tssr100278 11 6626120 to 6626191 71 + TSS region transcription start site region 100278
D030016M11Rik 11 6626134 to 6627497 1363 unclassified gene RIKEN cDNA D030016M11 gene
Wap 11 6635482 to 6638637 3155 - protein coding gene whey acidic protein
Tssr106751 11 6635536 to 6635541 5 - TSS region transcription start site region 106751
Tssr106752 11 6635545 to 6635555 10 - TSS region transcription start site region 106752
Tssr106753 11 6635568 to 6635572 4 - TSS region transcription start site region 106753
Tssr106754 11 6635578 to 6635583 5 - TSS region transcription start site region 106754
Tssr100279 11 6635601 to 6635609 8 + TSS region transcription start site region 100279
Tssr100280 11 6636705 to 6636721 16 + TSS region transcription start site region 100280
Tssr100281 11 6637231 to 6637250 19 + TSS region transcription start site region 100281
Tssr106755 11 6637245 to 6637260 15 - TSS region transcription start site region 106755
Tssr106756 11 6637273 to 6637302 29 - TSS region transcription start site region 106756
Tssr106757 11 6638571 to 6638585 14 - TSS region transcription start site region 106757
Tssr106758 11 6638640 to 6638655 15 - TSS region transcription start site region 106758
Tssr106759 11 6638791 to 6638797 6 - TSS region transcription start site region 106759
Gm11978 11 6650148 to 6660233 10085 - pseudogene predicted gene 11978
Cpgi2566 11 6658318 to 6658570 252 CpG island CpG island 2566
Tssr100282 11 6658510 to 6658574 64 + TSS region transcription start site region 100282
Ramp3 11 6658533 to 6677478 18945 + protein coding gene receptor (calcitonin) activity modifying protein 3
Tssr106760 11 6660209 to 6660223 14 - TSS region transcription start site region 106760
Tssr106761 11 6660231 to 6660240 9 - TSS region transcription start site region 106761
Tssr106762 11 6660259 to 6660270 11 - TSS region transcription start site region 106762
Tssr100283 11 6672694 to 6672696 2 + TSS region transcription start site region 100283
Tssr100284 11 6676771 to 6676782 11 + TSS region transcription start site region 100284
Cpgi2567 11 6680084 to 6680251 167 CpG island CpG island 2567
Tssr100285 11 6680355 to 6680391 36 + TSS region transcription start site region 100285
Gm11980 11 6685824 to 6686809 985 + pseudogene predicted gene 11980
Tssr100286 11 6688017 to 6688022 5 + TSS region transcription start site region 100286
Gm39575 11 6694909 to 6695977 1068 + lncRNA gene predicted gene, 39575
Cpgi2568 11 6706574 to 6706822 248 CpG island CpG island 2568
Tssr106763 11 6706915 to 6706916 1 - TSS region transcription start site region 106763
Gm11981 11 6716001 to 6720037 4036 - lncRNA gene predicted gene 11981
Tssr106764 11 6717138 to 6717183 45 - TSS region transcription start site region 106764
Gm11976 11 6718918 to 6719495 577 - pseudogene predicted gene 11976
Tssr106765 11 6719916 to 6719920 4 - TSS region transcription start site region 106765
Tssr106766 11 6720016 to 6720063 47 - TSS region transcription start site region 106766
Tssr106767 11 6720069 to 6720074 5 - TSS region transcription start site region 106767
Gm11977 11 6781708 to 6783138 1430 - pseudogene predicted gene 11977
Gm11979 11 6785838 to 6786580 742 - pseudogene predicted gene 11979
Gm11982 11 6825496 to 6825809 313 - pseudogene predicted gene 11982
Gm11983 11 6835626 to 6837654 2028 - pseudogene predicted gene 11983
Gm11984 11 6861539 to 6862304 765 - pseudogene predicted gene 11984
Tssr106768 11 6895099 to 6895133 34 - TSS region transcription start site region 106768
Tssr106769 11 6896127 to 6896128 1 - TSS region transcription start site region 106769
Scc6 11 6930277 to 89128908 82198631 QTL colon tumor susceptibility 6
Vtbt11 11 6930277 to 6930487 210 QTL vertebral trabecular bone trait 11
D11Mit71 11 6930277 to 6930487 210 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 71
Cpgi2569 11 7062899 to 7064802 1903 CpG island CpG island 2569
Tssr100287 11 7063329 to 7063338 9 + TSS region transcription start site region 100287
Tssr100288 11 7063401 to 7063404 3 + TSS region transcription start site region 100288
Tssr100289 11 7063423 to 7063496 73 + TSS region transcription start site region 100289
Adcy1 11 7063489 to 7178506 115017 + protein coding gene adenylate cyclase 1
Tssr100290 11 7063732 to 7063758 26 + TSS region transcription start site region 100290
Tssr100291 11 7119742 to 7119745 3 + TSS region transcription start site region 100291
Tssr100292 11 7145057 to 7145088 31 + TSS region transcription start site region 100292
Tssr106770 11 7152394 to 7152404 10 - TSS region transcription start site region 106770
Tssr100293 11 7160050 to 7160063 13 + TSS region transcription start site region 100293
Cccd201 11 7183157 to 7188569 5412 - lncRNA gene coiled coil domain 201
Tssr100294 11 7197650 to 7197656 6 + TSS region transcription start site region 100294
Tssr100295 11 7197780 to 7197795 15 + TSS region transcription start site region 100295
Igfbp1 11 7197787 to 7202546 4759 + protein coding gene insulin-like growth factor binding protein 1
Tssr100296 11 7197804 to 7197811 7 + TSS region transcription start site region 100296
Tssr100297 11 7197832 to 7197839 7 + TSS region transcription start site region 100297
Tssr100298 11 7197852 to 7197854 2 + TSS region transcription start site region 100298
Cpgi2570 11 7197888 to 7198331 443 CpG island CpG island 2570
Tssr3421 11 7199820 to 7199828 8 + TSS region transcription start site region 3421
Tssr100299 11 7199853 to 7199856 3 + TSS region transcription start site region 100299
Tssr100300 11 7199884 to 7199894 10 + TSS region transcription start site region 100300
Tssr106771 11 7200821 to 7200829 8 - TSS region transcription start site region 106771
Tssr100301 11 7201972 to 7201983 11 + TSS region transcription start site region 100301
Igfbp3 11 7206086 to 7213923 7837 - protein coding gene insulin-like growth factor binding protein 3
Tssr106772 11 7207185 to 7207213 28 - TSS region transcription start site region 106772
Tssr100302 11 7207365 to 7207380 15 + TSS region transcription start site region 100302
Tssr106773 11 7208410 to 7208428 18 - TSS region transcription start site region 106773
Tssr106774 11 7209506 to 7209512 6 - TSS region transcription start site region 106774
Tssr100303 11 7210015 to 7210023 8 + TSS region transcription start site region 100303
Tssr106775 11 7210182 to 7210194 12 - TSS region transcription start site region 106775
Cpgi2571 11 7213044 to 7214512 1468 CpG island CpG island 2571
Tssr106776 11 7213414 to 7213421 7 - TSS region transcription start site region 106776
Tssr106777 11 7213440 to 7213454 14 - TSS region transcription start site region 106777
Tssr106778 11 7213535 to 7213615 80 - TSS region transcription start site region 106778
Tssr106779 11 7213816 to 7213823 7 - TSS region transcription start site region 106779
Tssr106780 11 7213850 to 7213859 9 - TSS region transcription start site region 106780
Tssr106781 11 7213915 to 7213929 14 - TSS region transcription start site region 106781
Tssr106782 11 7213943 to 7213990 47 - TSS region transcription start site region 106782
Tssr106783 11 7214169 to 7214179 10 - TSS region transcription start site region 106783
Gm36565 11 7217097 to 7262326 45229 + lncRNA gene predicted gene, 36565
Tssr106784 11 7232189 to 7232192 3 - TSS region transcription start site region 106784
Gm11986 11 7270351 to 7290374 20023 - lincRNA gene predicted gene 11986
Gm36653 11 7404694 to 7423332 18638 + lncRNA gene predicted gene, 36653
Gm36720 11 7428876 to 7432935 4059 + lncRNA gene predicted gene, 36720
Tgyl1 11 33966219 to 6930277 -27035942 QTL triglyceride level 1