Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:65660679-68950707

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494 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Epfq4 11 12318637 to 68609504 56290867 QTL epididymal fat pad weight QTL 4
W10q2 11 12318637 to 68609504 56290867 QTL weight 10 weeks QTL 2
Lgq1 11 12318637 to 68609504 56290867 QTL late growth QTL 1
Lgaq1 11 12318637 to 68609504 56290867 QTL late growth adjusted QTL 1
W3q4 11 12318637 to 68609504 56290867 QTL weight 3 weeks QTL 4
Scfq3 11 12318637 to 68609504 56290867 QTL subcutaneous fat pad weight QTL 3
Orq2 11 12318637 to 68609504 56290867 QTL ovulation rate QTL 2
Tailq1 11 12318637 to 68609504 56290867 QTL tail length QTL 1
Egq4 11 12318637 to 68609504 56290867 QTL early growth QTL 4
W6q3 11 12318637 to 68609504 56290867 QTL weight 6 weeks QTL 3
Kidpq1 11 12318637 to 68609504 56290867 QTL kidney weight percentage QTL 1
Orgwq8 11 17106175 to 67187585 50081410 QTL organ weight QTL 8
Eae6 11 17831966 to 68609504 50777538 QTL experimental allergic encephalomyelitis susceptibility 6
Blmpf2 11 54174844 to 67187585 13012741 QTL bleomycin-induced pulmonary fibrosis 2
Ltxs2 11 63151287 to 68609504 5458217 QTL lethal factor toxin susceptibility 2
Gm40026 11 65650458 to 65682492 32034 + lncRNA gene predicted gene, 40026
Tssr102128 11 65667762 to 65667764 2 + TSS region transcription start site region 102128
Map2k4 11 65688243 to 65788297 100054 - protein coding gene mitogen-activated protein kinase kinase 4
Tssr108485 11 65728020 to 65728024 4 - TSS region transcription start site region 108485
Mir744 11 65734733 to 65734832 99 - miRNA gene microRNA 744
Tssr108486 11 65745827 to 65745844 17 - TSS region transcription start site region 108486
Tssr108487 11 65745852 to 65745880 28 - TSS region transcription start site region 108487
Cpgi3056 11 65787404 to 65788639 1235 CpG island CpG island 3056
Tssr108488 11 65788247 to 65788260 13 - TSS region transcription start site region 108488
Tssr108489 11 65788275 to 65788318 43 - TSS region transcription start site region 108489
Tssr108490 11 65788322 to 65788341 19 - TSS region transcription start site region 108490
Tssr108491 11 65806541 to 65806585 44 - TSS region transcription start site region 108491
Cpgi3057 11 65806555 to 65807652 1097 CpG island CpG island 3057
Tssr108492 11 65807019 to 65807034 15 - TSS region transcription start site region 108492
Zkscan6 11 65807175 to 65829239 22064 + protein coding gene zinc finger with KRAB and SCAN domains 6
Tssr102129 11 65807210 to 65807227 17 + TSS region transcription start site region 102129
Dnah9 11 65831282 to 66168551 337269 - protein coding gene dynein, axonemal, heavy chain 9
Tssr108493 11 66061306 to 66061315 9 - TSS region transcription start site region 108493
Tssr102130 11 66135488 to 66135489 1 + TSS region transcription start site region 102130
Gm40027 11 66145481 to 66160077 14596 + lncRNA gene predicted gene, 40027
Tssr108494 11 66149316 to 66149321 5 - TSS region transcription start site region 108494
Cpgi3058 11 66167914 to 66168617 703 CpG island CpG island 3058
Tssr102131 11 66168006 to 66168022 16 + TSS region transcription start site region 102131
Gm12296 11 66168035 to 66301237 133202 + lncRNA gene predicted gene 12296
Tssr108495 11 66168467 to 66168480 13 - TSS region transcription start site region 108495
Tssr108496 11 66168505 to 66168518 13 - TSS region transcription start site region 108496
Gm45917 11 66168522 to 66426709 258187 + lncRNA gene predicted gene, 45917
Shisa6 11 66211725 to 66525964 314239 - protein coding gene shisa family member 6
Cpgi3059 11 66217468 to 66217892 424 CpG island CpG island 3059
Gm45945 11 66248645 to 66279197 30552 + lncRNA gene predicted gene, 45945
Tssr102132 11 66319753 to 66319756 3 + TSS region transcription start site region 102132
D11Mit193 11 66337519 to 66337653 134 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 193
Tssr108497 11 66339589 to 66339593 4 - TSS region transcription start site region 108497
Tssr102133 11 66380391 to 66380394 3 + TSS region transcription start site region 102133
Cpgi3060 11 66525114 to 66527255 2141 CpG island CpG island 3060
Tssr108498 11 66526571 to 66526582 11 - TSS region transcription start site region 108498
Tssr108499 11 66526617 to 66526628 11 - TSS region transcription start site region 108499
Tssr108500 11 66526635 to 66526703 68 - TSS region transcription start site region 108500
Tssr108501 11 66526710 to 66526734 24 - TSS region transcription start site region 108501
Tssr108502 11 66526986 to 66527018 32 - TSS region transcription start site region 108502
Gm40028 11 66547785 to 66556312 8527 + lncRNA gene predicted gene, 40028
D11Mit113 11 66550163 to 66550307 144 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 113
Tssr3521 11 66563535 to 66563540 5 + TSS region transcription start site region 3521
Gm12297 11 66563607 to 66564585 978 + pseudogene predicted gene 12297
Gm12298 11 66905721 to 66947086 41365 - antisense lncRNA gene predicted gene 12298
Gm29712 11 66907552 to 66908454 902 + pseudogene predicted gene, 29712
D11Mit209 11 66909174 to 66909268 94 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 209
Pirt 11 66911981 to 66929876 17895 + protein coding gene phosphoinositide-interacting regulator of transient receptor potential channels
Tssr102134 11 66911983 to 66912003 20 + TSS region transcription start site region 102134
Tssr102135 11 66912004 to 66912044 40 + TSS region transcription start site region 102135
Tssr102136 11 66912052 to 66912071 19 + TSS region transcription start site region 102136
Tssr102137 11 66955088 to 66955102 14 + TSS region transcription start site region 102137
Tssr102138 11 66956480 to 66956489 9 + TSS region transcription start site region 102138
Tssr102139 11 66956508 to 66956525 17 + TSS region transcription start site region 102139
Tssr102140 11 66956534 to 66956557 23 + TSS region transcription start site region 102140
Tssr102141 11 66956565 to 66956575 10 + TSS region transcription start site region 102141
Tssr3522 11 66956592 to 66956597 5 + TSS region transcription start site region 3522
Tssr102142 11 66956620 to 66956667 47 + TSS region transcription start site region 102142
Tmem238l 11 66956638 to 66965014 8376 + protein coding gene transmembrane protein 238 like
Tssr102143 11 66956682 to 66956693 11 + TSS region transcription start site region 102143
Tssr102144 11 66956697 to 66956704 7 + TSS region transcription start site region 102144
Tssr102145 11 66957894 to 66957918 24 + TSS region transcription start site region 102145
Tssr102146 11 66957922 to 66957937 15 + TSS region transcription start site region 102146
Tssr102147 11 66957938 to 66957976 38 + TSS region transcription start site region 102147
Gm12299 11 67002086 to 67011625 9539 + unclassified non-coding RNA gene predicted gene 12299
Tssr102148 11 67010627 to 67010638 11 + TSS region transcription start site region 102148
Tssr108503 11 67011652 to 67011665 13 - TSS region transcription start site region 108503
Tssr108504 11 67011722 to 67011739 17 - TSS region transcription start site region 108504
Tssr102149 11 67023547 to 67023555 8 + TSS region transcription start site region 102149
Cpgi3061 11 67024936 to 67025437 501 CpG island CpG island 3061
Tssr102150 11 67025144 to 67025179 35 + TSS region transcription start site region 102150
Tmem220 11 67025154 to 67035312 10158 + protein coding gene transmembrane protein 220
C330020G15Rik 11 67035503 to 67036985 1482 unclassified gene RIKEN cDNA C330020G15 gene
Adprm 11 67037905 to 67052594 14689 - protein coding gene ADP-ribose/CDP-alcohol diphosphatase, manganese dependent
Tssr108505 11 67051742 to 67051775 33 - TSS region transcription start site region 108505
Cpgi3062 11 67052360 to 67053064 704 CpG island CpG island 3062
Tssr108506 11 67052563 to 67052618 55 - TSS region transcription start site region 108506
Tssr108507 11 67052640 to 67052651 11 - TSS region transcription start site region 108507
Tssr102151 11 67052641 to 67052708 67 + TSS region transcription start site region 102151
Sco1 11 67052670 to 67067070 14400 + protein coding gene SCO1 cytochrome c oxidase assembly protein
Tssr102152 11 67052710 to 67052721 11 + TSS region transcription start site region 102152
Tssr102153 11 67064750 to 67064771 21 + TSS region transcription start site region 102153
Tssr102154 11 67078293 to 67078307 14 + TSS region transcription start site region 102154
Myh3 11 67078300 to 67102291 23991 + protein coding gene myosin, heavy polypeptide 3, skeletal muscle, embryonic
Cpgi3063 11 67083740 to 67084263 523 CpG island CpG island 3063
Tssr3523 11 67090360 to 67090370 10 + TSS region transcription start site region 3523
Tssr102155 11 67092073 to 67092088 15 + TSS region transcription start site region 102155
Cpgi3064 11 67094473 to 67094925 452 CpG island CpG island 3064
Tssr102156 11 67097894 to 67097948 54 + TSS region transcription start site region 102156
Tssr102157 11 67098568 to 67098581 13 + TSS region transcription start site region 102157
Mir6923 11 67099804 to 67099875 71 + miRNA gene microRNA 6923
Cpgi3065 11 67107275 to 67107470 195 CpG island CpG island 3065
2310065F04Rik 11 67112461 to 67120080 7619 - lincRNA gene RIKEN cDNA 2310065F04 gene
Cpgi3066 11 67113119 to 67113288 169 CpG island CpG island 3066
Tssr108508 11 67113438 to 67113474 36 - TSS region transcription start site region 108508
Tssr108509 11 67114788 to 67114793 5 - TSS region transcription start site region 108509
Tssr108510 11 67114826 to 67114831 5 - TSS region transcription start site region 108510
Tssr108511 11 67114882 to 67114889 7 - TSS region transcription start site region 108511
Tssr108512 11 67114908 to 67114927 19 - TSS region transcription start site region 108512
Tssr108513 11 67114940 to 67114952 12 - TSS region transcription start site region 108513
Tssr108514 11 67116818 to 67116826 8 - TSS region transcription start site region 108514
Tssr108515 11 67116831 to 67116845 14 - TSS region transcription start site region 108515
D11Mit89 11 67126005 to 67126153 148 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 89
Gm31285 11 67134937 to 67143944 9007 - lncRNA gene predicted gene, 31285
Tssr108516 11 67140970 to 67140994 24 - TSS region transcription start site region 108516
Tssr3524 11 67171011 to 67171040 29 + TSS region transcription start site region 3524
Myh2 11 67171027 to 67197517 26490 + protein coding gene myosin, heavy polypeptide 2, skeletal muscle, adult
Tssr102158 11 67171059 to 67171071 12 + TSS region transcription start site region 102158
Tssr102159 11 67171095 to 67171112 17 + TSS region transcription start site region 102159
Ity2b 11 67187365 to 79923086 12735721 QTL immunity to S. typhimurium 2b
Ssta4 11 67187365 to 67187585 220 QTL susceptibility to Salmonella typhimurium antigens 4
D11Mit5 11 67187365 to 67187585 220 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 5
9430073C21Rik 11 67195680 to 67199234 3554 - antisense lncRNA gene Riken cDNA 9430073C21 gene
Tssr102160 11 67200091 to 67200107 16 + TSS region transcription start site region 102160
Myh1 11 67200109 to 67224575 24466 + protein coding gene myosin, heavy polypeptide 1, skeletal muscle, adult
Tssr102161 11 67200137 to 67200148 11 + TSS region transcription start site region 102161
Tssr102162 11 67201743 to 67201754 11 + TSS region transcription start site region 102162
Tssr108517 11 67215946 to 67215957 11 - TSS region transcription start site region 108517
Tssr102163 11 67219697 to 67219708 11 + TSS region transcription start site region 102163
Myhas 11 67224681 to 67237573 12892 - antisense lncRNA gene myosin heavy chain gene antisense RNA
Tssr102164 11 67236185 to 67236196 11 + TSS region transcription start site region 102164
Tssr102165 11 67236204 to 67236211 7 + TSS region transcription start site region 102165
Tssr108518 11 67237451 to 67237457 6 - TSS region transcription start site region 108518
Tssr108519 11 67237571 to 67237609 38 - TSS region transcription start site region 108519
Tssr102166 11 67237764 to 67237776 12 + TSS region transcription start site region 102166
Tssr102167 11 67237800 to 67237818 18 + TSS region transcription start site region 102167
Tssr102168 11 67237852 to 67237864 12 + TSS region transcription start site region 102168
Tssr102169 11 67238017 to 67238047 30 + TSS region transcription start site region 102169
Myh4 11 67238029 to 67260446 22417 + protein coding gene myosin, heavy polypeptide 4, skeletal muscle
Tssr102170 11 67240557 to 67240605 48 + TSS region transcription start site region 102170
Tssr108520 11 67240774 to 67240794 20 - TSS region transcription start site region 108520
Tssr102171 11 67240911 to 67240946 35 + TSS region transcription start site region 102171
Tssr102172 11 67242809 to 67242818 9 + TSS region transcription start site region 102172
Tssr102173 11 67242826 to 67242837 11 + TSS region transcription start site region 102173
Tssr108521 11 67242834 to 67242837 3 - TSS region transcription start site region 108521
Tssr108522 11 67243042 to 67243087 45 - TSS region transcription start site region 108522
Tssr102174 11 67243223 to 67243226 3 + TSS region transcription start site region 102174
Tssr102175 11 67243259 to 67243289 30 + TSS region transcription start site region 102175
Tssr102176 11 67243423 to 67243444 21 + TSS region transcription start site region 102176
Tssr102177 11 67243449 to 67243463 14 + TSS region transcription start site region 102177
Tssr108523 11 67243457 to 67243466 9 - TSS region transcription start site region 108523
Tssr108524 11 67243473 to 67243493 20 - TSS region transcription start site region 108524
Tssr102178 11 67244637 to 67244649 12 + TSS region transcription start site region 102178
Tssr108525 11 67244703 to 67244726 23 - TSS region transcription start site region 108525
Tssr102179 11 67245431 to 67245468 37 + TSS region transcription start site region 102179
Tssr102180 11 67245769 to 67245783 14 + TSS region transcription start site region 102180
Tssr102181 11 67248561 to 67248567 6 + TSS region transcription start site region 102181
Tssr3525 11 67248577 to 67248588 11 + TSS region transcription start site region 3525
Tssr108526 11 67248651 to 67248674 23 - TSS region transcription start site region 108526
Tssr102182 11 67248682 to 67248693 11 + TSS region transcription start site region 102182
Tssr108527 11 67249253 to 67249272 19 - TSS region transcription start site region 108527
Tssr102183 11 67249257 to 67249266 9 + TSS region transcription start site region 102183
Tssr102184 11 67249825 to 67249833 8 + TSS region transcription start site region 102184
Tssr102185 11 67249855 to 67249866 11 + TSS region transcription start site region 102185
Tssr102186 11 67250004 to 67250013 9 + TSS region transcription start site region 102186
Tssr102187 11 67250039 to 67250051 12 + TSS region transcription start site region 102187
Tssr102188 11 67250313 to 67250338 25 + TSS region transcription start site region 102188
Tssr3526 11 67250363 to 67250377 14 + TSS region transcription start site region 3526
Tssr102189 11 67250506 to 67250526 20 + TSS region transcription start site region 102189
Tssr102190 11 67250533 to 67250542 9 + TSS region transcription start site region 102190
Tssr102191 11 67250544 to 67250563 19 + TSS region transcription start site region 102191
Tssr102192 11 67250564 to 67250569 5 + TSS region transcription start site region 102192
Tssr102193 11 67250605 to 67250612 7 + TSS region transcription start site region 102193
Tssr108528 11 67250629 to 67250644 15 - TSS region transcription start site region 108528
Tssr102194 11 67250747 to 67250754 7 + TSS region transcription start site region 102194
Tssr102195 11 67250827 to 67250837 10 + TSS region transcription start site region 102195
Tssr102196 11 67250865 to 67250876 11 + TSS region transcription start site region 102196
Tssr3527 11 67250873 to 67250877 4 - TSS region transcription start site region 3527
Tssr102197 11 67250893 to 67250920 27 + TSS region transcription start site region 102197
Tssr108529 11 67250937 to 67250958 21 - TSS region transcription start site region 108529
Tssr108530 11 67250959 to 67250960 1 - TSS region transcription start site region 108530
Tssr108531 11 67250962 to 67250988 26 - TSS region transcription start site region 108531
Tssr102198 11 67250971 to 67250981 10 + TSS region transcription start site region 102198
Tssr102199 11 67251699 to 67251735 36 + TSS region transcription start site region 102199
Tssr108532 11 67251736 to 67251758 22 - TSS region transcription start site region 108532
Tssr102200 11 67251850 to 67251886 36 + TSS region transcription start site region 102200
Tssr108533 11 67251897 to 67251910 13 - TSS region transcription start site region 108533
Tssr108534 11 67252596 to 67252604 8 - TSS region transcription start site region 108534
Tssr108535 11 67252692 to 67252710 18 - TSS region transcription start site region 108535
Tssr102201 11 67253475 to 67253518 43 + TSS region transcription start site region 102201
Tssr102202 11 67253997 to 67254007 10 + TSS region transcription start site region 102202
Tssr108536 11 67254044 to 67254054 10 - TSS region transcription start site region 108536
Tssr108537 11 67254056 to 67254075 19 - TSS region transcription start site region 108537
Tssr102203 11 67254057 to 67254070 13 + TSS region transcription start site region 102203
Tssr102204 11 67254455 to 67254466 11 + TSS region transcription start site region 102204