Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:6555661-6655670

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44 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ccm2 11 6546887 to 6596744 49857 + protein coding gene cerebral cavernous malformation 2
Gm11975 11 6559023 to 6559503 480 - pseudogene predicted gene 11975
Tssr100269 11 6560167 to 6560190 23 + TSS region transcription start site region 100269
Tssr100270 11 6560191 to 6560209 18 + TSS region transcription start site region 100270
Tssr100271 11 6560226 to 6560240 14 + TSS region transcription start site region 100271
Tssr106741 11 6560972 to 6560976 4 - TSS region transcription start site region 106741
Tssr106742 11 6561000 to 6561023 23 - TSS region transcription start site region 106742
Tssr100272 11 6561106 to 6561126 20 + TSS region transcription start site region 100272
Tssr100273 11 6561133 to 6561149 16 + TSS region transcription start site region 100273
Tssr100274 11 6561178 to 6561181 3 + TSS region transcription start site region 100274
Tssr100275 11 6564348 to 6564361 13 + TSS region transcription start site region 100275
Tssr100276 11 6588227 to 6588231 4 + TSS region transcription start site region 100276
Tssr100277 11 6588979 to 6588980 1 + TSS region transcription start site region 100277
Nacad 11 6597823 to 6606053 8230 - protein coding gene NAC alpha domain containing
Cpgi2563 11 6598946 to 6599275 329 CpG island CpG island 2563
Tssr106743 11 6599435 to 6599445 10 - TSS region transcription start site region 106743
Cpgi2564 11 6605163 to 6606131 968 CpG island CpG island 2564
Tssr106744 11 6605571 to 6605642 71 - TSS region transcription start site region 106744
Tssr106745 11 6605661 to 6605670 9 - TSS region transcription start site region 106745
Tbrg4 11 6615598 to 6626067 10469 - protein coding gene transforming growth factor beta regulated gene 4
Gm24313 11 6619808 to 6619940 132 - snoRNA gene predicted gene, 24313
Snora5c 11 6620319 to 6620419 100 - snoRNA gene small nucleolar RNA, H/ACA box 5C
Tssr106746 11 6623980 to 6623991 11 - TSS region transcription start site region 106746
Tssr106747 11 6624230 to 6624263 33 - TSS region transcription start site region 106747
Cpgi2565 11 6625645 to 6626540 895 CpG island CpG island 2565
Tssr106748 11 6625785 to 6625796 11 - TSS region transcription start site region 106748
Tssr106749 11 6625805 to 6625822 17 - TSS region transcription start site region 106749
Tssr106750 11 6626030 to 6626072 42 - TSS region transcription start site region 106750
Tssr100278 11 6626120 to 6626191 71 + TSS region transcription start site region 100278
D030016M11Rik 11 6626134 to 6627497 1363 unclassified gene RIKEN cDNA D030016M11 gene
Wap 11 6635482 to 6638637 3155 - protein coding gene whey acidic protein
Tssr106751 11 6635536 to 6635541 5 - TSS region transcription start site region 106751
Tssr106752 11 6635545 to 6635555 10 - TSS region transcription start site region 106752
Tssr106753 11 6635568 to 6635572 4 - TSS region transcription start site region 106753
Tssr106754 11 6635578 to 6635583 5 - TSS region transcription start site region 106754
Tssr100279 11 6635601 to 6635609 8 + TSS region transcription start site region 100279
Tssr100280 11 6636705 to 6636721 16 + TSS region transcription start site region 100280
Tssr100281 11 6637231 to 6637250 19 + TSS region transcription start site region 100281
Tssr106755 11 6637245 to 6637260 15 - TSS region transcription start site region 106755
Tssr106756 11 6637273 to 6637302 29 - TSS region transcription start site region 106756
Tssr106757 11 6638571 to 6638585 14 - TSS region transcription start site region 106757
Tssr106758 11 6638640 to 6638655 15 - TSS region transcription start site region 106758
Tssr106759 11 6638791 to 6638797 6 - TSS region transcription start site region 106759
Gm11978 11 6650148 to 6660233 10085 - pseudogene predicted gene 11978