Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:65298467-67038480

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83 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D11Mit276 11 65330657 to 65330790 133 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 276
Tssr108479 11 65345223 to 65345227 4 - TSS region transcription start site region 108479
Tssr108480 11 65356383 to 65356396 13 - TSS region transcription start site region 108480
Tssr108481 11 65365780 to 65365819 39 - TSS region transcription start site region 108481
Tssr108482 11 65365866 to 65365872 6 - TSS region transcription start site region 108482
Gm26128 11 65626394 to 65626503 109 + snRNA gene predicted gene, 26128
Gm30786 11 65642412 to 65660361 17949 - lncRNA gene predicted gene, 30786
Tssr108483 11 65648395 to 65648427 32 - TSS region transcription start site region 108483
Tssr108484 11 65649795 to 65649814 19 - TSS region transcription start site region 108484
Gm40026 11 65650458 to 65682492 32034 + lncRNA gene predicted gene, 40026
Tssr102128 11 65667762 to 65667764 2 + TSS region transcription start site region 102128
Map2k4 11 65688243 to 65788297 100054 - protein coding gene mitogen-activated protein kinase kinase 4
Tssr108485 11 65728020 to 65728024 4 - TSS region transcription start site region 108485
Mir744 11 65734733 to 65734832 99 - miRNA gene microRNA 744
Tssr108486 11 65745827 to 65745844 17 - TSS region transcription start site region 108486
Tssr108487 11 65745852 to 65745880 28 - TSS region transcription start site region 108487
Cpgi3056 11 65787404 to 65788639 1235 CpG island CpG island 3056
Tssr108488 11 65788247 to 65788260 13 - TSS region transcription start site region 108488
Tssr108489 11 65788275 to 65788318 43 - TSS region transcription start site region 108489
Tssr108490 11 65788322 to 65788341 19 - TSS region transcription start site region 108490
Tssr108491 11 65806541 to 65806585 44 - TSS region transcription start site region 108491
Cpgi3057 11 65806555 to 65807652 1097 CpG island CpG island 3057
Tssr108492 11 65807019 to 65807034 15 - TSS region transcription start site region 108492
Zkscan6 11 65807175 to 65829239 22064 + protein coding gene zinc finger with KRAB and SCAN domains 6
Tssr102129 11 65807210 to 65807227 17 + TSS region transcription start site region 102129
Dnah9 11 65831282 to 66168551 337269 - protein coding gene dynein, axonemal, heavy chain 9
Tssr108493 11 66061306 to 66061315 9 - TSS region transcription start site region 108493
Tssr102130 11 66135488 to 66135489 1 + TSS region transcription start site region 102130
Gm40027 11 66145481 to 66160077 14596 + lncRNA gene predicted gene, 40027
Tssr108494 11 66149316 to 66149321 5 - TSS region transcription start site region 108494
Cpgi3058 11 66167914 to 66168617 703 CpG island CpG island 3058
Tssr102131 11 66168006 to 66168022 16 + TSS region transcription start site region 102131
Gm12296 11 66168035 to 66301237 133202 + lncRNA gene predicted gene 12296
Tssr108495 11 66168467 to 66168480 13 - TSS region transcription start site region 108495
Tssr108496 11 66168505 to 66168518 13 - TSS region transcription start site region 108496
Gm45917 11 66168522 to 66426709 258187 + lncRNA gene predicted gene, 45917
Shisa6 11 66211725 to 66525964 314239 - protein coding gene shisa family member 6
Cpgi3059 11 66217468 to 66217892 424 CpG island CpG island 3059
Gm45945 11 66248645 to 66279197 30552 + lncRNA gene predicted gene, 45945
Tssr102132 11 66319753 to 66319756 3 + TSS region transcription start site region 102132
D11Mit193 11 66337519 to 66337653 134 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 193
Tssr108497 11 66339589 to 66339593 4 - TSS region transcription start site region 108497
Tssr102133 11 66380391 to 66380394 3 + TSS region transcription start site region 102133
Cpgi3060 11 66525114 to 66527255 2141 CpG island CpG island 3060
Tssr108498 11 66526571 to 66526582 11 - TSS region transcription start site region 108498
Tssr108499 11 66526617 to 66526628 11 - TSS region transcription start site region 108499
Tssr108500 11 66526635 to 66526703 68 - TSS region transcription start site region 108500
Tssr108501 11 66526710 to 66526734 24 - TSS region transcription start site region 108501
Tssr108502 11 66526986 to 66527018 32 - TSS region transcription start site region 108502
Gm40028 11 66547785 to 66556312 8527 + lncRNA gene predicted gene, 40028
D11Mit113 11 66550163 to 66550307 144 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 113
Tssr3521 11 66563535 to 66563540 5 + TSS region transcription start site region 3521
Gm12297 11 66563607 to 66564585 978 + pseudogene predicted gene 12297
Gm12298 11 66905721 to 66947086 41365 - antisense lncRNA gene predicted gene 12298
Gm29712 11 66907552 to 66908454 902 + pseudogene predicted gene, 29712
D11Mit209 11 66909174 to 66909268 94 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 209
Pirt 11 66911981 to 66929876 17895 + protein coding gene phosphoinositide-interacting regulator of transient receptor potential channels
Tssr102134 11 66911983 to 66912003 20 + TSS region transcription start site region 102134
Tssr102135 11 66912004 to 66912044 40 + TSS region transcription start site region 102135
Tssr102136 11 66912052 to 66912071 19 + TSS region transcription start site region 102136
Tssr102137 11 66955088 to 66955102 14 + TSS region transcription start site region 102137
Tssr102138 11 66956480 to 66956489 9 + TSS region transcription start site region 102138
Tssr102139 11 66956508 to 66956525 17 + TSS region transcription start site region 102139
Tssr102140 11 66956534 to 66956557 23 + TSS region transcription start site region 102140
Tssr102141 11 66956565 to 66956575 10 + TSS region transcription start site region 102141
Tssr3522 11 66956592 to 66956597 5 + TSS region transcription start site region 3522
Tssr102142 11 66956620 to 66956667 47 + TSS region transcription start site region 102142
Tmem238l 11 66956638 to 66965014 8376 + protein coding gene transmembrane protein 238 like
Tssr102143 11 66956682 to 66956693 11 + TSS region transcription start site region 102143
Tssr102144 11 66956697 to 66956704 7 + TSS region transcription start site region 102144
Tssr102145 11 66957894 to 66957918 24 + TSS region transcription start site region 102145
Tssr102146 11 66957922 to 66957937 15 + TSS region transcription start site region 102146
Tssr102147 11 66957938 to 66957976 38 + TSS region transcription start site region 102147
Gm12299 11 67002086 to 67011625 9539 + unclassified non-coding RNA gene predicted gene 12299
Tssr102148 11 67010627 to 67010638 11 + TSS region transcription start site region 102148
Tssr108503 11 67011652 to 67011665 13 - TSS region transcription start site region 108503
Tssr108504 11 67011722 to 67011739 17 - TSS region transcription start site region 108504
Tssr102149 11 67023547 to 67023555 8 + TSS region transcription start site region 102149
Cpgi3061 11 67024936 to 67025437 501 CpG island CpG island 3061
Tssr102150 11 67025144 to 67025179 35 + TSS region transcription start site region 102150
Tmem220 11 67025154 to 67035312 10158 + protein coding gene transmembrane protein 220
C330020G15Rik 11 67035503 to 67036985 1482 unclassified gene RIKEN cDNA C330020G15 gene
Adprm 11 67037905 to 67052594 14689 - protein coding gene ADP-ribose/CDP-alcohol diphosphatase, manganese dependent