Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:65243467-67093480

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114 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Myocd 11 65176561 to 65269989 93428 - protein coding gene myocardin
Tssr108467 11 65243549 to 65243562 13 - TSS region transcription start site region 108467
Tssr108468 11 65243570 to 65243603 33 - TSS region transcription start site region 108468
Tssr108469 11 65243636 to 65243651 15 - TSS region transcription start site region 108469
Tssr108470 11 65243656 to 65243668 12 - TSS region transcription start site region 108470
Tssr108471 11 65261708 to 65261725 17 - TSS region transcription start site region 108471
Tssr108472 11 65261740 to 65261747 7 - TSS region transcription start site region 108472
Tssr108473 11 65261809 to 65261818 9 - TSS region transcription start site region 108473
Tssr108474 11 65261885 to 65261893 8 - TSS region transcription start site region 108474
Tssr108475 11 65269078 to 65269089 11 - TSS region transcription start site region 108475
Cpgi3055 11 65269840 to 65270489 649 CpG island CpG island 3055
Tssr108476 11 65269863 to 65269879 16 - TSS region transcription start site region 108476
Tssr108477 11 65269947 to 65269954 7 - TSS region transcription start site region 108477
Tssr108478 11 65269984 to 65270002 18 - TSS region transcription start site region 108478
Gm30586 11 65270010 to 65287592 17582 + lncRNA gene predicted gene, 30586
Tssr102126 11 65270144 to 65270161 17 + TSS region transcription start site region 102126
Tssr102127 11 65272235 to 65272244 9 + TSS region transcription start site region 102127
Gm12295 11 65277654 to 65287833 10179 - lincRNA gene predicted gene 12295
D11Mit276 11 65330657 to 65330790 133 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 276
Tssr108479 11 65345223 to 65345227 4 - TSS region transcription start site region 108479
Tssr108480 11 65356383 to 65356396 13 - TSS region transcription start site region 108480
Tssr108481 11 65365780 to 65365819 39 - TSS region transcription start site region 108481
Tssr108482 11 65365866 to 65365872 6 - TSS region transcription start site region 108482
Gm26128 11 65626394 to 65626503 109 + snRNA gene predicted gene, 26128
Gm30786 11 65642412 to 65660361 17949 - lncRNA gene predicted gene, 30786
Tssr108483 11 65648395 to 65648427 32 - TSS region transcription start site region 108483
Tssr108484 11 65649795 to 65649814 19 - TSS region transcription start site region 108484
Gm40026 11 65650458 to 65682492 32034 + lncRNA gene predicted gene, 40026
Tssr102128 11 65667762 to 65667764 2 + TSS region transcription start site region 102128
Map2k4 11 65688243 to 65788297 100054 - protein coding gene mitogen-activated protein kinase kinase 4
Tssr108485 11 65728020 to 65728024 4 - TSS region transcription start site region 108485
Mir744 11 65734733 to 65734832 99 - miRNA gene microRNA 744
Tssr108486 11 65745827 to 65745844 17 - TSS region transcription start site region 108486
Tssr108487 11 65745852 to 65745880 28 - TSS region transcription start site region 108487
Cpgi3056 11 65787404 to 65788639 1235 CpG island CpG island 3056
Tssr108488 11 65788247 to 65788260 13 - TSS region transcription start site region 108488
Tssr108489 11 65788275 to 65788318 43 - TSS region transcription start site region 108489
Tssr108490 11 65788322 to 65788341 19 - TSS region transcription start site region 108490
Tssr108491 11 65806541 to 65806585 44 - TSS region transcription start site region 108491
Cpgi3057 11 65806555 to 65807652 1097 CpG island CpG island 3057
Tssr108492 11 65807019 to 65807034 15 - TSS region transcription start site region 108492
Zkscan6 11 65807175 to 65829239 22064 + protein coding gene zinc finger with KRAB and SCAN domains 6
Tssr102129 11 65807210 to 65807227 17 + TSS region transcription start site region 102129
Dnah9 11 65831282 to 66168551 337269 - protein coding gene dynein, axonemal, heavy chain 9
Tssr108493 11 66061306 to 66061315 9 - TSS region transcription start site region 108493
Tssr102130 11 66135488 to 66135489 1 + TSS region transcription start site region 102130
Gm40027 11 66145481 to 66160077 14596 + lncRNA gene predicted gene, 40027
Tssr108494 11 66149316 to 66149321 5 - TSS region transcription start site region 108494
Cpgi3058 11 66167914 to 66168617 703 CpG island CpG island 3058
Tssr102131 11 66168006 to 66168022 16 + TSS region transcription start site region 102131
Gm12296 11 66168035 to 66301237 133202 + lncRNA gene predicted gene 12296
Tssr108495 11 66168467 to 66168480 13 - TSS region transcription start site region 108495
Tssr108496 11 66168505 to 66168518 13 - TSS region transcription start site region 108496
Gm45917 11 66168522 to 66426709 258187 + lncRNA gene predicted gene, 45917
Shisa6 11 66211725 to 66525964 314239 - protein coding gene shisa family member 6
Cpgi3059 11 66217468 to 66217892 424 CpG island CpG island 3059
Gm45945 11 66248645 to 66279197 30552 + lncRNA gene predicted gene, 45945
Tssr102132 11 66319753 to 66319756 3 + TSS region transcription start site region 102132
D11Mit193 11 66337519 to 66337653 134 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 193
Tssr108497 11 66339589 to 66339593 4 - TSS region transcription start site region 108497
Tssr102133 11 66380391 to 66380394 3 + TSS region transcription start site region 102133
Cpgi3060 11 66525114 to 66527255 2141 CpG island CpG island 3060
Tssr108498 11 66526571 to 66526582 11 - TSS region transcription start site region 108498
Tssr108499 11 66526617 to 66526628 11 - TSS region transcription start site region 108499
Tssr108500 11 66526635 to 66526703 68 - TSS region transcription start site region 108500
Tssr108501 11 66526710 to 66526734 24 - TSS region transcription start site region 108501
Tssr108502 11 66526986 to 66527018 32 - TSS region transcription start site region 108502
Gm40028 11 66547785 to 66556312 8527 + lncRNA gene predicted gene, 40028
D11Mit113 11 66550163 to 66550307 144 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 113
Tssr3521 11 66563535 to 66563540 5 + TSS region transcription start site region 3521
Gm12297 11 66563607 to 66564585 978 + pseudogene predicted gene 12297
Gm12298 11 66905721 to 66947086 41365 - antisense lncRNA gene predicted gene 12298
Gm29712 11 66907552 to 66908454 902 + pseudogene predicted gene, 29712
D11Mit209 11 66909174 to 66909268 94 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 209
Pirt 11 66911981 to 66929876 17895 + protein coding gene phosphoinositide-interacting regulator of transient receptor potential channels
Tssr102134 11 66911983 to 66912003 20 + TSS region transcription start site region 102134
Tssr102135 11 66912004 to 66912044 40 + TSS region transcription start site region 102135
Tssr102136 11 66912052 to 66912071 19 + TSS region transcription start site region 102136
Tssr102137 11 66955088 to 66955102 14 + TSS region transcription start site region 102137
Tssr102138 11 66956480 to 66956489 9 + TSS region transcription start site region 102138
Tssr102139 11 66956508 to 66956525 17 + TSS region transcription start site region 102139
Tssr102140 11 66956534 to 66956557 23 + TSS region transcription start site region 102140
Tssr102141 11 66956565 to 66956575 10 + TSS region transcription start site region 102141
Tssr3522 11 66956592 to 66956597 5 + TSS region transcription start site region 3522
Tssr102142 11 66956620 to 66956667 47 + TSS region transcription start site region 102142
Tmem238l 11 66956638 to 66965014 8376 + protein coding gene transmembrane protein 238 like
Tssr102143 11 66956682 to 66956693 11 + TSS region transcription start site region 102143
Tssr102144 11 66956697 to 66956704 7 + TSS region transcription start site region 102144
Tssr102145 11 66957894 to 66957918 24 + TSS region transcription start site region 102145
Tssr102146 11 66957922 to 66957937 15 + TSS region transcription start site region 102146
Tssr102147 11 66957938 to 66957976 38 + TSS region transcription start site region 102147
Gm12299 11 67002086 to 67011625 9539 + unclassified non-coding RNA gene predicted gene 12299
Tssr102148 11 67010627 to 67010638 11 + TSS region transcription start site region 102148
Tssr108503 11 67011652 to 67011665 13 - TSS region transcription start site region 108503
Tssr108504 11 67011722 to 67011739 17 - TSS region transcription start site region 108504
Tssr102149 11 67023547 to 67023555 8 + TSS region transcription start site region 102149
Cpgi3061 11 67024936 to 67025437 501 CpG island CpG island 3061
Tssr102150 11 67025144 to 67025179 35 + TSS region transcription start site region 102150
Tmem220 11 67025154 to 67035312 10158 + protein coding gene transmembrane protein 220
C330020G15Rik 11 67035503 to 67036985 1482 unclassified gene RIKEN cDNA C330020G15 gene
Adprm 11 67037905 to 67052594 14689 - protein coding gene ADP-ribose/CDP-alcohol diphosphatase, manganese dependent
Tssr108505 11 67051742 to 67051775 33 - TSS region transcription start site region 108505
Cpgi3062 11 67052360 to 67053064 704 CpG island CpG island 3062
Tssr108506 11 67052563 to 67052618 55 - TSS region transcription start site region 108506
Tssr108507 11 67052640 to 67052651 11 - TSS region transcription start site region 108507
Tssr102151 11 67052641 to 67052708 67 + TSS region transcription start site region 102151
Sco1 11 67052670 to 67067070 14400 + protein coding gene SCO1 cytochrome c oxidase assembly protein
Tssr102152 11 67052710 to 67052721 11 + TSS region transcription start site region 102152
Tssr102153 11 67064750 to 67064771 21 + TSS region transcription start site region 102153
Tssr102154 11 67078293 to 67078307 14 + TSS region transcription start site region 102154
Myh3 11 67078300 to 67102291 23991 + protein coding gene myosin, heavy polypeptide 3, skeletal muscle, embryonic
Cpgi3063 11 67083740 to 67084263 523 CpG island CpG island 3063
Tssr3523 11 67090360 to 67090370 10 + TSS region transcription start site region 3523
Tssr102155 11 67092073 to 67092088 15 + TSS region transcription start site region 102155