Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:6440894-6600969

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71 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
H2afv 11 6427229 to 6444443 17214 - protein coding gene H2A histone family, member V
Cpgi2559 11 6443931 to 6444793 862 CpG island CpG island 2559
Tssr106716 11 6444359 to 6444370 11 - TSS region transcription start site region 106716
Tssr106717 11 6444384 to 6444439 55 - TSS region transcription start site region 106717
Tssr100256 11 6446174 to 6446195 21 + TSS region transcription start site region 100256
Gm11970 11 6446218 to 6446537 319 + pseudogene predicted gene 11970
Gm11971 11 6453151 to 6453438 287 + pseudogene predicted gene 11971
Gm11972 11 6455517 to 6455905 388 - pseudogene predicted gene 11972
Purb 11 6467599 to 6475917 8318 - protein coding gene purine rich element binding protein B
Tssr106718 11 6469968 to 6469991 23 - TSS region transcription start site region 106718
Tssr106719 11 6471473 to 6471493 20 - TSS region transcription start site region 106719
Gm22123 11 6472225 to 6472277 52 - miRNA gene predicted gene, 22123
Tssr106720 11 6472232 to 6472239 7 - TSS region transcription start site region 106720
Cpgi2560 11 6474629 to 6476457 1828 CpG island CpG island 2560
Tssr100257 11 6474693 to 6474751 58 + TSS region transcription start site region 100257
Tssr100258 11 6474906 to 6474946 40 + TSS region transcription start site region 100258
Tssr100259 11 6474962 to 6475025 63 + TSS region transcription start site region 100259
Tssr100260 11 6475102 to 6475116 14 + TSS region transcription start site region 100260
Tssr100261 11 6475266 to 6475307 41 + TSS region transcription start site region 100261
Gm11973 11 6475425 to 6493535 18110 + antisense lncRNA gene predicted gene 11973
Tssr106721 11 6475450 to 6475470 20 - TSS region transcription start site region 106721
Tssr106722 11 6475881 to 6475917 36 - TSS region transcription start site region 106722
Tssr106723 11 6475992 to 6476102 110 - TSS region transcription start site region 106723
Tssr100262 11 6476161 to 6476175 14 + TSS region transcription start site region 100262
Myo1g 11 6506548 to 6520960 14412 - protein coding gene myosin IG
Tssr106724 11 6519168 to 6519180 12 - TSS region transcription start site region 106724
Tssr106725 11 6519497 to 6519513 16 - TSS region transcription start site region 106725
Tssr106726 11 6519769 to 6519789 20 - TSS region transcription start site region 106726
Tssr106727 11 6519800 to 6519828 28 - TSS region transcription start site region 106727
Tssr106728 11 6520844 to 6520851 7 - TSS region transcription start site region 106728
Tssr106729 11 6520864 to 6520866 2 - TSS region transcription start site region 106729
Tssr106730 11 6520872 to 6520891 19 - TSS region transcription start site region 106730
Tssr106731 11 6520894 to 6520969 75 - TSS region transcription start site region 106731
Tssr100263 11 6521010 to 6521024 14 + TSS region transcription start site region 100263
Tssr100264 11 6521038 to 6521048 10 + TSS region transcription start site region 100264
Tssr106732 11 6522782 to 6522786 4 - TSS region transcription start site region 106732
Tssr106733 11 6522848 to 6522854 6 - TSS region transcription start site region 106733
Snhg15 11 6525591 to 6528760 3169 - lncRNA gene small nucleolar RNA host gene 15
Snora9 11 6528033 to 6528165 132 - snoRNA gene small nucleolar RNA, H/ACA box 9
Cpgi2561 11 6528277 to 6529061 784 CpG island CpG island 2561
Tssr106734 11 6528394 to 6528403 9 - TSS region transcription start site region 106734
Tssr106735 11 6528420 to 6528433 13 - TSS region transcription start site region 106735
Tssr106736 11 6528441 to 6528462 21 - TSS region transcription start site region 106736
Tssr106737 11 6528496 to 6528521 25 - TSS region transcription start site region 106737
Tssr106738 11 6528707 to 6528780 73 - TSS region transcription start site region 106738
Tssr106739 11 6528782 to 6528807 25 - TSS region transcription start site region 106739
Tssr100265 11 6528902 to 6528915 13 + TSS region transcription start site region 100265
Gm24000 11 6546147 to 6546235 88 - snoRNA gene predicted gene, 24000
Cpgi2562 11 6546414 to 6547430 1016 CpG island CpG island 2562
Tssr106740 11 6546753 to 6546793 40 - TSS region transcription start site region 106740
Tssr100266 11 6546875 to 6546898 23 + TSS region transcription start site region 100266
Ccm2 11 6546887 to 6596744 49857 + protein coding gene cerebral cavernous malformation 2
Tssr100267 11 6546899 to 6546941 42 + TSS region transcription start site region 100267
2810468A05Rik 11 6547176 to 6547684 508 unclassified gene RIKEN cDNA 2810468A05 gene
Tssr3420 11 6547209 to 6547220 11 + TSS region transcription start site region 3420
Tssr100268 11 6547275 to 6547295 20 + TSS region transcription start site region 100268
Gm11975 11 6559023 to 6559503 480 - pseudogene predicted gene 11975
Tssr100269 11 6560167 to 6560190 23 + TSS region transcription start site region 100269
Tssr100270 11 6560191 to 6560209 18 + TSS region transcription start site region 100270
Tssr100271 11 6560226 to 6560240 14 + TSS region transcription start site region 100271
Tssr106741 11 6560972 to 6560976 4 - TSS region transcription start site region 106741
Tssr106742 11 6561000 to 6561023 23 - TSS region transcription start site region 106742
Tssr100272 11 6561106 to 6561126 20 + TSS region transcription start site region 100272
Tssr100273 11 6561133 to 6561149 16 + TSS region transcription start site region 100273
Tssr100274 11 6561178 to 6561181 3 + TSS region transcription start site region 100274
Tssr100275 11 6564348 to 6564361 13 + TSS region transcription start site region 100275
Tssr100276 11 6588227 to 6588231 4 + TSS region transcription start site region 100276
Tssr100277 11 6588979 to 6588980 1 + TSS region transcription start site region 100277
Nacad 11 6597823 to 6606053 8230 - protein coding gene NAC alpha domain containing
Cpgi2563 11 6598946 to 6599275 329 CpG island CpG island 2563
Tssr106743 11 6599435 to 6599445 10 - TSS region transcription start site region 106743