Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:63837052-66237541

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135 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ckdbp2 11 54190115 to 65213015 11022900 QTL chronic kidney disease blood pressure locus 2
Hmgb1-ps3 11 63846183 to 63846818 635 - pseudogene high mobility group box 1, pseudogene 3
Hs3st3b1 11 63885792 to 63922290 36498 - protein coding gene heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1
Tssr108449 11 63887765 to 63887769 4 - TSS region transcription start site region 108449
Cpgi3041 11 63888932 to 63889247 315 CpG island CpG island 3041
Cpgi3042 11 63914417 to 63914687 270 CpG island CpG island 3042
Cpgi3043 11 63919181 to 63922696 3515 CpG island CpG island 3043
Tssr108450 11 63919630 to 63919634 4 - TSS region transcription start site region 108450
Tssr108451 11 63922257 to 63922292 35 - TSS region transcription start site region 108451
Tssr108452 11 63922299 to 63922342 43 - TSS region transcription start site region 108452
Cpgi3044 11 63923320 to 63923916 596 CpG island CpG island 3044
Cpgi3045 11 63924372 to 63924685 313 CpG island CpG island 3045
Cpgi3046 11 63925146 to 63925705 559 CpG island CpG island 3046
Cpgi3047 11 63952341 to 63952504 163 CpG island CpG island 3047
Gm30060 11 63956551 to 63962540 5989 + lncRNA gene predicted gene, 30060
Cox10 11 63962627 to 64079468 116841 - protein coding gene heme A:farnesyltransferase cytochrome c oxidase assembly factor 10
Tssr102108 11 63963890 to 63963895 5 + TSS region transcription start site region 102108
9630013K17Rik 11 63964226 to 63968040 3814 + antisense lncRNA gene RIKEN cDNA 9630013K17 gene
Tssr102109 11 63966071 to 63966080 9 + TSS region transcription start site region 102109
Tssr108453 11 63975295 to 63975304 9 - TSS region transcription start site region 108453
Tssr102110 11 63989691 to 63989700 9 + TSS region transcription start site region 102110
Tssr102111 11 63989707 to 63989729 22 + TSS region transcription start site region 102111
Tssr102112 11 63989740 to 63989743 3 + TSS region transcription start site region 102112
Tssr102113 11 63989767 to 63989772 5 + TSS region transcription start site region 102113
Tssr102114 11 63989793 to 63989801 8 + TSS region transcription start site region 102114
Tssr102115 11 63989874 to 63989883 9 + TSS region transcription start site region 102115
D11Mit339 11 63992937 to 63993061 124 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 339
Gm12289 11 64012615 to 64015224 2609 + antisense lncRNA gene predicted gene 12289
Tssr108454 11 64060206 to 64060225 19 - TSS region transcription start site region 108454
Tssr108455 11 64060232 to 64060247 15 - TSS region transcription start site region 108455
Cpgi3048 11 64079157 to 64079751 594 CpG island CpG island 3048
Tssr108456 11 64079444 to 64079480 36 - TSS region transcription start site region 108456
Tssr102116 11 64079478 to 64079527 49 + TSS region transcription start site region 102116
2810001G20Rik 11 64079484 to 64083259 3775 + antisense lncRNA gene RIKEN cDNA 2810001G20 gene
Tssr102117 11 64079547 to 64079574 27 + TSS region transcription start site region 102117
Tssr102118 11 64079613 to 64079624 11 + TSS region transcription start site region 102118
Gm12290 11 64164573 to 64182171 17598 + lincRNA gene predicted gene 12290
Tssr108457 11 64209041 to 64209052 11 - TSS region transcription start site region 108457
Cpgi3049 11 64434961 to 64436790 1829 CpG island CpG island 3049
F930015N05Rik 11 64435156 to 64436653 1497 - unclassified gene RIKEN cDNA F930015N05 gene
Tssr102119 11 64435315 to 64435339 24 + TSS region transcription start site region 102119
Hs3st3a1 11 64435332 to 64522835 87503 + protein coding gene heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1
Tssr102120 11 64438526 to 64438531 5 + TSS region transcription start site region 102120
Cpgi3050 11 64520099 to 64520334 235 CpG island CpG island 3050
Gm24275 11 64590495 to 64590640 145 - miRNA gene predicted gene, 24275
Gm30305 11 64662793 to 64719258 56465 - lncRNA gene predicted gene, 30305
Tssr102121 11 64741594 to 64741600 6 + TSS region transcription start site region 102121
Gm12291 11 64759717 to 64760027 310 - pseudogene predicted gene 12291
Tssr108458 11 64774640 to 64774644 4 - TSS region transcription start site region 108458
Tssr102122 11 64800740 to 64800757 17 + TSS region transcription start site region 102122
Gm12292 11 64840600 to 64843753 3153 - lincRNA gene predicted gene 12292
Gm40025 11 64842114 to 64843917 1803 + lncRNA gene predicted gene, 40025
Cpgi3051 11 64978739 to 64979497 758 CpG island CpG island 3051
Tssr102123 11 64979025 to 64979110 85 + TSS region transcription start site region 102123
Elac2 11 64979038 to 65002069 23031 + protein coding gene elaC ribonuclease Z 2
Tssr102124 11 64979121 to 64979136 15 + TSS region transcription start site region 102124
Cpgi3052 11 65001789 to 65002013 224 CpG island CpG island 3052
Arhgap44 11 65002039 to 65162961 160922 - protein coding gene Rho GTPase activating protein 44
Tssr108459 11 65003078 to 65003082 4 - TSS region transcription start site region 108459
Tssr3518 11 65009943 to 65009974 31 - TSS region transcription start site region 3518
Tssr108460 11 65031723 to 65031730 7 - TSS region transcription start site region 108460
Tssr3519 11 65032231 to 65032237 6 + TSS region transcription start site region 3519
Tssr108461 11 65032402 to 65032413 11 - TSS region transcription start site region 108461
Tssr108462 11 65032432 to 65032447 15 - TSS region transcription start site region 108462
Gm12294 11 65037052 to 65037541 489 - pseudogene predicted gene 12294
Gm25991 11 65067709 to 65067807 98 - miRNA gene predicted gene, 25991
Tssr3520 11 65096403 to 65096406 3 + TSS region transcription start site region 3520
C030044O21Rik 11 65145187 to 65147937 2750 unclassified gene RIKEN cDNA C030044O21 gene
1700086D15Rik 11 65152617 to 65158343 5726 - protein coding gene RIKEN cDNA 1700086D15 gene
Tssr102125 11 65159957 to 65159984 27 + TSS region transcription start site region 102125
Cpgi3053 11 65162085 to 65163122 1037 CpG island CpG island 3053
B430202K04Rik 11 65162131 to 65164065 1934 protein coding gene RIKEN cDNA B430202K04 gene
Tssr108463 11 65162907 to 65162976 69 - TSS region transcription start site region 108463
Gm12293 11 65169844 to 65170364 520 - pseudogene predicted gene 12293
Tssr108464 11 65174384 to 65174391 7 - TSS region transcription start site region 108464
Myocd 11 65176561 to 65269989 93428 - protein coding gene myocardin
Tssr108465 11 65178089 to 65178096 7 - TSS region transcription start site region 108465
Cpgi3054 11 65187419 to 65187665 246 CpG island CpG island 3054
D11Mit177 11 65212885 to 65213015 130 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 177
Tssr108466 11 65221796 to 65221821 25 - TSS region transcription start site region 108466
Tssr108467 11 65243549 to 65243562 13 - TSS region transcription start site region 108467
Tssr108468 11 65243570 to 65243603 33 - TSS region transcription start site region 108468
Tssr108469 11 65243636 to 65243651 15 - TSS region transcription start site region 108469
Tssr108470 11 65243656 to 65243668 12 - TSS region transcription start site region 108470
Tssr108471 11 65261708 to 65261725 17 - TSS region transcription start site region 108471
Tssr108472 11 65261740 to 65261747 7 - TSS region transcription start site region 108472
Tssr108473 11 65261809 to 65261818 9 - TSS region transcription start site region 108473
Tssr108474 11 65261885 to 65261893 8 - TSS region transcription start site region 108474
Tssr108475 11 65269078 to 65269089 11 - TSS region transcription start site region 108475
Cpgi3055 11 65269840 to 65270489 649 CpG island CpG island 3055
Tssr108476 11 65269863 to 65269879 16 - TSS region transcription start site region 108476
Tssr108477 11 65269947 to 65269954 7 - TSS region transcription start site region 108477
Tssr108478 11 65269984 to 65270002 18 - TSS region transcription start site region 108478
Gm30586 11 65270010 to 65287592 17582 + lncRNA gene predicted gene, 30586
Tssr102126 11 65270144 to 65270161 17 + TSS region transcription start site region 102126
Tssr102127 11 65272235 to 65272244 9 + TSS region transcription start site region 102127
Gm12295 11 65277654 to 65287833 10179 - lincRNA gene predicted gene 12295
D11Mit276 11 65330657 to 65330790 133 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 276
Tssr108479 11 65345223 to 65345227 4 - TSS region transcription start site region 108479
Tssr108480 11 65356383 to 65356396 13 - TSS region transcription start site region 108480
Tssr108481 11 65365780 to 65365819 39 - TSS region transcription start site region 108481
Tssr108482 11 65365866 to 65365872 6 - TSS region transcription start site region 108482
Gm26128 11 65626394 to 65626503 109 + snRNA gene predicted gene, 26128
Gm30786 11 65642412 to 65660361 17949 - lncRNA gene predicted gene, 30786
Tssr108483 11 65648395 to 65648427 32 - TSS region transcription start site region 108483
Tssr108484 11 65649795 to 65649814 19 - TSS region transcription start site region 108484
Gm40026 11 65650458 to 65682492 32034 + lncRNA gene predicted gene, 40026
Tssr102128 11 65667762 to 65667764 2 + TSS region transcription start site region 102128
Map2k4 11 65688243 to 65788297 100054 - protein coding gene mitogen-activated protein kinase kinase 4
Tssr108485 11 65728020 to 65728024 4 - TSS region transcription start site region 108485
Mir744 11 65734733 to 65734832 99 - miRNA gene microRNA 744
Tssr108486 11 65745827 to 65745844 17 - TSS region transcription start site region 108486
Tssr108487 11 65745852 to 65745880 28 - TSS region transcription start site region 108487
Cpgi3056 11 65787404 to 65788639 1235 CpG island CpG island 3056
Tssr108488 11 65788247 to 65788260 13 - TSS region transcription start site region 108488
Tssr108489 11 65788275 to 65788318 43 - TSS region transcription start site region 108489
Tssr108490 11 65788322 to 65788341 19 - TSS region transcription start site region 108490
Tssr108491 11 65806541 to 65806585 44 - TSS region transcription start site region 108491
Cpgi3057 11 65806555 to 65807652 1097 CpG island CpG island 3057
Tssr108492 11 65807019 to 65807034 15 - TSS region transcription start site region 108492
Zkscan6 11 65807175 to 65829239 22064 + protein coding gene zinc finger with KRAB and SCAN domains 6
Tssr102129 11 65807210 to 65807227 17 + TSS region transcription start site region 102129
Dnah9 11 65831282 to 66168551 337269 - protein coding gene dynein, axonemal, heavy chain 9
Tssr108493 11 66061306 to 66061315 9 - TSS region transcription start site region 108493
Tssr102130 11 66135488 to 66135489 1 + TSS region transcription start site region 102130
Gm40027 11 66145481 to 66160077 14596 + lncRNA gene predicted gene, 40027
Tssr108494 11 66149316 to 66149321 5 - TSS region transcription start site region 108494
Cpgi3058 11 66167914 to 66168617 703 CpG island CpG island 3058
Tssr102131 11 66168006 to 66168022 16 + TSS region transcription start site region 102131
Gm12296 11 66168035 to 66301237 133202 + lncRNA gene predicted gene 12296
Tssr108495 11 66168467 to 66168480 13 - TSS region transcription start site region 108495
Tssr108496 11 66168505 to 66168518 13 - TSS region transcription start site region 108496
Gm45917 11 66168522 to 66426709 258187 + lncRNA gene predicted gene, 45917
Shisa6 11 66211725 to 66525964 314239 - protein coding gene shisa family member 6
Cpgi3059 11 66217468 to 66217892 424 CpG island CpG island 3059