Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:63805156-65066653

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65 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm12288 11 63817019 to 63818300 1281 - pseudogene predicted gene 12288
Hmgb1-ps3 11 63846183 to 63846818 635 - pseudogene high mobility group box 1, pseudogene 3
Hs3st3b1 11 63885792 to 63922290 36498 - protein coding gene heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1
Tssr108449 11 63887765 to 63887769 4 - TSS region transcription start site region 108449
Cpgi3041 11 63888932 to 63889247 315 CpG island CpG island 3041
Cpgi3042 11 63914417 to 63914687 270 CpG island CpG island 3042
Cpgi3043 11 63919181 to 63922696 3515 CpG island CpG island 3043
Tssr108450 11 63919630 to 63919634 4 - TSS region transcription start site region 108450
Tssr108451 11 63922257 to 63922292 35 - TSS region transcription start site region 108451
Tssr108452 11 63922299 to 63922342 43 - TSS region transcription start site region 108452
Cpgi3044 11 63923320 to 63923916 596 CpG island CpG island 3044
Cpgi3045 11 63924372 to 63924685 313 CpG island CpG island 3045
Cpgi3046 11 63925146 to 63925705 559 CpG island CpG island 3046
Cpgi3047 11 63952341 to 63952504 163 CpG island CpG island 3047
Gm30060 11 63956551 to 63962540 5989 + lncRNA gene predicted gene, 30060
Cox10 11 63962627 to 64079468 116841 - protein coding gene heme A:farnesyltransferase cytochrome c oxidase assembly factor 10
Tssr102108 11 63963890 to 63963895 5 + TSS region transcription start site region 102108
9630013K17Rik 11 63964226 to 63968040 3814 + antisense lncRNA gene RIKEN cDNA 9630013K17 gene
Tssr102109 11 63966071 to 63966080 9 + TSS region transcription start site region 102109
Tssr108453 11 63975295 to 63975304 9 - TSS region transcription start site region 108453
Tssr102110 11 63989691 to 63989700 9 + TSS region transcription start site region 102110
Tssr102111 11 63989707 to 63989729 22 + TSS region transcription start site region 102111
Tssr102112 11 63989740 to 63989743 3 + TSS region transcription start site region 102112
Tssr102113 11 63989767 to 63989772 5 + TSS region transcription start site region 102113
Tssr102114 11 63989793 to 63989801 8 + TSS region transcription start site region 102114
Tssr102115 11 63989874 to 63989883 9 + TSS region transcription start site region 102115
D11Mit339 11 63992937 to 63993061 124 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 339
Gm12289 11 64012615 to 64015224 2609 + antisense lncRNA gene predicted gene 12289
Tssr108454 11 64060206 to 64060225 19 - TSS region transcription start site region 108454
Tssr108455 11 64060232 to 64060247 15 - TSS region transcription start site region 108455
Cpgi3048 11 64079157 to 64079751 594 CpG island CpG island 3048
Tssr108456 11 64079444 to 64079480 36 - TSS region transcription start site region 108456
Tssr102116 11 64079478 to 64079527 49 + TSS region transcription start site region 102116
2810001G20Rik 11 64079484 to 64083259 3775 + antisense lncRNA gene RIKEN cDNA 2810001G20 gene
Tssr102117 11 64079547 to 64079574 27 + TSS region transcription start site region 102117
Tssr102118 11 64079613 to 64079624 11 + TSS region transcription start site region 102118
Gm12290 11 64164573 to 64182171 17598 + lincRNA gene predicted gene 12290
Tssr108457 11 64209041 to 64209052 11 - TSS region transcription start site region 108457
Cpgi3049 11 64434961 to 64436790 1829 CpG island CpG island 3049
F930015N05Rik 11 64435156 to 64436653 1497 - unclassified gene RIKEN cDNA F930015N05 gene
Tssr102119 11 64435315 to 64435339 24 + TSS region transcription start site region 102119
Hs3st3a1 11 64435332 to 64522835 87503 + protein coding gene heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1
Tssr102120 11 64438526 to 64438531 5 + TSS region transcription start site region 102120
Cpgi3050 11 64520099 to 64520334 235 CpG island CpG island 3050
Gm24275 11 64590495 to 64590640 145 - miRNA gene predicted gene, 24275
Gm30305 11 64662793 to 64719258 56465 - lncRNA gene predicted gene, 30305
Tssr102121 11 64741594 to 64741600 6 + TSS region transcription start site region 102121
Gm12291 11 64759717 to 64760027 310 - pseudogene predicted gene 12291
Tssr108458 11 64774640 to 64774644 4 - TSS region transcription start site region 108458
Tssr102122 11 64800740 to 64800757 17 + TSS region transcription start site region 102122
Gm12292 11 64840600 to 64843753 3153 - lincRNA gene predicted gene 12292
Gm40025 11 64842114 to 64843917 1803 + lncRNA gene predicted gene, 40025
Cpgi3051 11 64978739 to 64979497 758 CpG island CpG island 3051
Tssr102123 11 64979025 to 64979110 85 + TSS region transcription start site region 102123
Elac2 11 64979038 to 65002069 23031 + protein coding gene elaC ribonuclease Z 2
Tssr102124 11 64979121 to 64979136 15 + TSS region transcription start site region 102124
Cpgi3052 11 65001789 to 65002013 224 CpG island CpG island 3052
Arhgap44 11 65002039 to 65162961 160922 - protein coding gene Rho GTPase activating protein 44
Tssr108459 11 65003078 to 65003082 4 - TSS region transcription start site region 108459
Tssr3518 11 65009943 to 65009974 31 - TSS region transcription start site region 3518
Tssr108460 11 65031723 to 65031730 7 - TSS region transcription start site region 108460
Tssr3519 11 65032231 to 65032237 6 + TSS region transcription start site region 3519
Tssr108461 11 65032402 to 65032413 11 - TSS region transcription start site region 108461
Tssr108462 11 65032432 to 65032447 15 - TSS region transcription start site region 108462
Gm12294 11 65037052 to 65037541 489 - pseudogene predicted gene 12294