Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:63194630-64644634

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69 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Spqq1 11 54174844 to 63428696 9253852 QTL sperm quality QTL 1
Cpgi3039 11 63213898 to 63214056 158 CpG island CpG island 3039
Gm12285 11 63241248 to 63241445 197 - pseudogene predicted gene 12285
Gm29851 11 63247297 to 63250153 2856 - lncRNA gene predicted gene, 29851
Tssr108444 11 63271011 to 63271020 9 - TSS region transcription start site region 108444
Tssr102107 11 63271400 to 63271411 11 + TSS region transcription start site region 102107
D11Mit350 11 63294341 to 63294436 95 DNA segment DNA Segment, Chr 11 Massachusetts Institute of Technology 350
Bbaa4 11 63294341 to 63294436 95 QTL B.burgdorferi-associated arthritis 4
Gm12286 11 63312310 to 63313311 1001 - pseudogene predicted gene 12286
Tssr108445 11 63313381 to 63313384 3 - TSS region transcription start site region 108445
B130011K05Rik 11 63413169 to 63417888 4719 + lincRNA gene RIKEN cDNA B130011K05 gene
D11Mit242 11 63428581 to 63428696 115 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 242
Bmd11 11 63428581 to 63428696 115 QTL bone mineral density 11
Lmr15 11 63428581 to 81939647 18511066 QTL leishmaniasis resistance 15
Stzid3 11 63428581 to 94173092 30744511 QTL streptozotocin induced diabetes susceptibility 3
Gm40016 11 63448969 to 63464157 15188 - lncRNA gene predicted gene, 40016
Cpgi3040 11 63463826 to 63464018 192 CpG island CpG island 3040
Tssr108446 11 63463921 to 63463932 11 - TSS region transcription start site region 108446
Tssr108447 11 63463955 to 63463974 19 - TSS region transcription start site region 108447
Tssr108448 11 63464079 to 63464114 35 - TSS region transcription start site region 108448
D11Mit156 11 63510408 to 63510519 111 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 156
Gm12287 11 63599632 to 63600923 1291 - pseudogene predicted gene 12287
Gm40019 11 63612829 to 63615792 2963 - lncRNA gene predicted gene, 40019
Gm29958 11 63619192 to 63644391 25199 + protein coding gene predicted gene, 29958
Gm12288 11 63817019 to 63818300 1281 - pseudogene predicted gene 12288
Hmgb1-ps3 11 63846183 to 63846818 635 - pseudogene high mobility group box 1, pseudogene 3
Hs3st3b1 11 63885792 to 63922290 36498 - protein coding gene heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1
Tssr108449 11 63887765 to 63887769 4 - TSS region transcription start site region 108449
Cpgi3041 11 63888932 to 63889247 315 CpG island CpG island 3041
Cpgi3042 11 63914417 to 63914687 270 CpG island CpG island 3042
Cpgi3043 11 63919181 to 63922696 3515 CpG island CpG island 3043
Tssr108450 11 63919630 to 63919634 4 - TSS region transcription start site region 108450
Tssr108451 11 63922257 to 63922292 35 - TSS region transcription start site region 108451
Tssr108452 11 63922299 to 63922342 43 - TSS region transcription start site region 108452
Cpgi3044 11 63923320 to 63923916 596 CpG island CpG island 3044
Cpgi3045 11 63924372 to 63924685 313 CpG island CpG island 3045
Cpgi3046 11 63925146 to 63925705 559 CpG island CpG island 3046
Cpgi3047 11 63952341 to 63952504 163 CpG island CpG island 3047
Gm30060 11 63956551 to 63962540 5989 + lncRNA gene predicted gene, 30060
Cox10 11 63962627 to 64079468 116841 - protein coding gene heme A:farnesyltransferase cytochrome c oxidase assembly factor 10
Tssr102108 11 63963890 to 63963895 5 + TSS region transcription start site region 102108
9630013K17Rik 11 63964226 to 63968040 3814 + antisense lncRNA gene RIKEN cDNA 9630013K17 gene
Tssr102109 11 63966071 to 63966080 9 + TSS region transcription start site region 102109
Tssr108453 11 63975295 to 63975304 9 - TSS region transcription start site region 108453
Tssr102110 11 63989691 to 63989700 9 + TSS region transcription start site region 102110
Tssr102111 11 63989707 to 63989729 22 + TSS region transcription start site region 102111
Tssr102112 11 63989740 to 63989743 3 + TSS region transcription start site region 102112
Tssr102113 11 63989767 to 63989772 5 + TSS region transcription start site region 102113
Tssr102114 11 63989793 to 63989801 8 + TSS region transcription start site region 102114
Tssr102115 11 63989874 to 63989883 9 + TSS region transcription start site region 102115
D11Mit339 11 63992937 to 63993061 124 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 339
Gm12289 11 64012615 to 64015224 2609 + antisense lncRNA gene predicted gene 12289
Tssr108454 11 64060206 to 64060225 19 - TSS region transcription start site region 108454
Tssr108455 11 64060232 to 64060247 15 - TSS region transcription start site region 108455
Cpgi3048 11 64079157 to 64079751 594 CpG island CpG island 3048
Tssr108456 11 64079444 to 64079480 36 - TSS region transcription start site region 108456
Tssr102116 11 64079478 to 64079527 49 + TSS region transcription start site region 102116
2810001G20Rik 11 64079484 to 64083259 3775 + antisense lncRNA gene RIKEN cDNA 2810001G20 gene
Tssr102117 11 64079547 to 64079574 27 + TSS region transcription start site region 102117
Tssr102118 11 64079613 to 64079624 11 + TSS region transcription start site region 102118
Gm12290 11 64164573 to 64182171 17598 + lincRNA gene predicted gene 12290
Tssr108457 11 64209041 to 64209052 11 - TSS region transcription start site region 108457
Cpgi3049 11 64434961 to 64436790 1829 CpG island CpG island 3049
F930015N05Rik 11 64435156 to 64436653 1497 - unclassified gene RIKEN cDNA F930015N05 gene
Tssr102119 11 64435315 to 64435339 24 + TSS region transcription start site region 102119
Hs3st3a1 11 64435332 to 64522835 87503 + protein coding gene heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1
Tssr102120 11 64438526 to 64438531 5 + TSS region transcription start site region 102120
Cpgi3050 11 64520099 to 64520334 235 CpG island CpG island 3050
Gm24275 11 64590495 to 64590640 145 - miRNA gene predicted gene, 24275