Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:62731287-69029504

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748 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Scfq3 11 12318637 to 68609504 56290867 QTL subcutaneous fat pad weight QTL 3
Lgq1 11 12318637 to 68609504 56290867 QTL late growth QTL 1
Lgaq1 11 12318637 to 68609504 56290867 QTL late growth adjusted QTL 1
W6q3 11 12318637 to 68609504 56290867 QTL weight 6 weeks QTL 3
Kidpq1 11 12318637 to 68609504 56290867 QTL kidney weight percentage QTL 1
Orq2 11 12318637 to 68609504 56290867 QTL ovulation rate QTL 2
Tailq1 11 12318637 to 68609504 56290867 QTL tail length QTL 1
Egq4 11 12318637 to 68609504 56290867 QTL early growth QTL 4
Epfq4 11 12318637 to 68609504 56290867 QTL epididymal fat pad weight QTL 4
W3q4 11 12318637 to 68609504 56290867 QTL weight 3 weeks QTL 4
W10q2 11 12318637 to 68609504 56290867 QTL weight 10 weeks QTL 2
Orgwq8 11 17106175 to 67187585 50081410 QTL organ weight QTL 8
Eae6 11 17831966 to 68609504 50777538 QTL experimental allergic encephalomyelitis susceptibility 6
Acigg5 11 46528416 to 62992617 16464201 QTL anti COL7 IgG2a/c antibody 5
Blmpf2 11 54174844 to 67187585 13012741 QTL bleomycin-induced pulmonary fibrosis 2
Spqq1 11 54174844 to 63428696 9253852 QTL sperm quality QTL 1
Ckdbp2 11 54190115 to 65213015 11022900 QTL chronic kidney disease blood pressure locus 2
Zfp287 11 62700356 to 62731905 31549 - protein coding gene zinc finger protein 287
Cpgi3030 11 62731454 to 62732114 660 CpG island CpG island 3030
Tssr108437 11 62731865 to 62731910 45 - TSS region transcription start site region 108437
Cpgi3031 11 62745982 to 62746481 499 CpG island CpG island 3031
n-TWcca8 11 62746015 to 62746086 71 - tRNA gene nuclear encoded tRNA trytophan 8 (anticodon CCA)
Gm27194 11 62749852 to 62752787 2935 + lincRNA gene predicted gene 27194
Wsb2-ps 11 62750064 to 62751280 1216 - pseudogene WD repeat and SOCS box-containing 2, pseudogene
Cpgi3032 11 62751094 to 62751445 351 CpG island CpG island 3032
Gm10428 11 62753100 to 62753498 398 + protein coding gene predicted gene 10428
Cpgi3033 11 62756670 to 62757284 614 CpG island CpG island 3033
Tssr108438 11 62760525 to 62760568 43 - TSS region transcription start site region 108438
Tssr102062 11 62760601 to 62760628 27 + TSS region transcription start site region 102062
Tssr102063 11 62761027 to 62761051 24 + TSS region transcription start site region 102063
Zfp286os 11 62761236 to 62765554 4318 + antisense lncRNA gene zinc finger protein 286, opposite strand
Gm24151 11 62776985 to 62777125 140 + snoRNA gene predicted gene, 24151
Zfp286 11 62778387 to 62789483 11096 - protein coding gene zinc finger protein 286
Cpgi3034 11 62789009 to 62789778 769 CpG island CpG island 3034
Tssr108439 11 62789402 to 62789443 41 - TSS region transcription start site region 108439
Tssr108440 11 62789445 to 62789478 33 - TSS region transcription start site region 108440
Trim16 11 62820191 to 62842948 22757 + protein coding gene tripartite motif-containing 16
Tssr102064 11 62820430 to 62820447 17 + TSS region transcription start site region 102064
Tssr102065 11 62820471 to 62820489 18 + TSS region transcription start site region 102065
Tssr102066 11 62842755 to 62842760 5 + TSS region transcription start site region 102066
Tssr102067 11 62847062 to 62847087 25 + TSS region transcription start site region 102067
Fbxw10 11 62847069 to 62877465 30396 + protein coding gene F-box and WD-40 domain protein 10
Tssr102068 11 62847090 to 62847103 13 + TSS region transcription start site region 102068
Tssr102069 11 62847111 to 62847132 21 + TSS region transcription start site region 102069
Tssr102070 11 62862109 to 62862114 5 + TSS region transcription start site region 102070
Cpgi3035 11 62879274 to 62880070 796 CpG island CpG island 3035
Tvp23b 11 62879435 to 62895186 15751 + protein coding gene trans-golgi network vesicle protein 23B
Tssr102071 11 62879449 to 62879536 87 + TSS region transcription start site region 102071
Tssr102072 11 62879560 to 62879580 20 + TSS region transcription start site region 102072
Tssr108441 11 62915532 to 62915535 3 - TSS region transcription start site region 108441
Tvp23bos 11 62919079 to 62921592 2513 - antisense lncRNA gene trans-golgi network vesicle protein 23B, opposite strand
Gm36614 11 62933253 to 62939590 6337 + lncRNA gene predicted gene, 36614
Cdrt4os2 11 62950425 to 62951079 654 - antisense lncRNA gene CMT1A duplicated region transcript 4, opposite strand 2
Tssr108442 11 62951095 to 62951110 15 - TSS region transcription start site region 108442
Tssr102073 11 62951155 to 62951159 4 + TSS region transcription start site region 102073
Tssr102074 11 62951178 to 62951185 7 + TSS region transcription start site region 102074
Tssr102075 11 62951191 to 62951195 4 + TSS region transcription start site region 102075
Cdrt4 11 62951193 to 62993095 41902 + protein coding gene CMT1A duplicated region transcript 4
Tssr102076 11 62951197 to 62951231 34 + TSS region transcription start site region 102076
Cdrt4os1 11 62990453 to 63004134 13681 - antisense lncRNA gene CMT1A duplicated region transcript 4, opposite strand 1
Gm46284 11 62994326 to 63000140 5814 + lncRNA gene predicted gene, 46284
Tssr102077 11 63046737 to 63046770 33 + TSS region transcription start site region 102077
Gm36874 11 63051209 to 63056102 4893 + lncRNA gene predicted gene, 36874
Tssr102078 11 63051326 to 63051341 15 + TSS region transcription start site region 102078
Cpgi3036 11 63061558 to 63061773 215 CpG island CpG island 3036
Tssr102079 11 63061599 to 63061676 77 + TSS region transcription start site region 102079
Tekt3 11 63061659 to 63094960 33301 + protein coding gene tektin 3
Gm36926 11 63090087 to 63119259 29172 - lncRNA gene predicted gene, 36926
Tssr102080 11 63115306 to 63115313 7 + TSS region transcription start site region 102080
Tssr108443 11 63119257 to 63119268 11 - TSS region transcription start site region 108443
Tssr102081 11 63128973 to 63128990 17 + TSS region transcription start site region 102081
Pmp22 11 63128982 to 63159547 30565 + protein coding gene peripheral myelin protein 22
Tssr102082 11 63128995 to 63129006 11 + TSS region transcription start site region 102082
Tssr102083 11 63129027 to 63129036 9 + TSS region transcription start site region 102083
Cpgi3037 11 63131420 to 63131622 202 CpG island CpG island 3037
Tssr102084 11 63131502 to 63131509 7 + TSS region transcription start site region 102084
Tssr102085 11 63131516 to 63131539 23 + TSS region transcription start site region 102085
Tssr102086 11 63131553 to 63131570 17 + TSS region transcription start site region 102086
Cpgi3038 11 63132368 to 63133393 1025 CpG island CpG island 3038
Tssr102087 11 63132648 to 63132677 29 + TSS region transcription start site region 102087
Tssr102088 11 63133068 to 63133075 7 + TSS region transcription start site region 102088
Tssr102089 11 63133092 to 63133129 37 + TSS region transcription start site region 102089
Tssr102090 11 63133136 to 63133145 9 + TSS region transcription start site region 102090
Tssr102091 11 63133172 to 63133177 5 + TSS region transcription start site region 102091
Tssr102092 11 63134454 to 63134468 14 + TSS region transcription start site region 102092
Tssr102093 11 63146642 to 63146646 4 + TSS region transcription start site region 102093
Tssr102094 11 63151113 to 63151145 32 + TSS region transcription start site region 102094
Tssr102095 11 63151213 to 63151234 21 + TSS region transcription start site region 102095
D11Mit88 11 63151287 to 63151537 250 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 88
Ltxs2 11 63151287 to 68609504 5458217 QTL lethal factor toxin susceptibility 2
Tssr102096 11 63157874 to 63157878 4 + TSS region transcription start site region 102096
Tssr102097 11 63158343 to 63158368 25 + TSS region transcription start site region 102097
Tssr102098 11 63158414 to 63158434 20 + TSS region transcription start site region 102098
Tssr102099 11 63158441 to 63158460 19 + TSS region transcription start site region 102099
Tssr102100 11 63158471 to 63158482 11 + TSS region transcription start site region 102100
Tssr102101 11 63158514 to 63158559 45 + TSS region transcription start site region 102101
Tssr102102 11 63158562 to 63158596 34 + TSS region transcription start site region 102102
Tssr102103 11 63158642 to 63158702 60 + TSS region transcription start site region 102103
Tssr102104 11 63158757 to 63158783 26 + TSS region transcription start site region 102104
Tssr102105 11 63158796 to 63158811 15 + TSS region transcription start site region 102105
Tssr102106 11 63158816 to 63158831 15 + TSS region transcription start site region 102106
B430319H21Rik 11 63173914 to 63188454 14540 + lincRNA gene RIKEN cDNA B430319H21 gene
Cpgi3039 11 63213898 to 63214056 158 CpG island CpG island 3039
Gm12285 11 63241248 to 63241445 197 - pseudogene predicted gene 12285
Gm29851 11 63247297 to 63250153 2856 - lncRNA gene predicted gene, 29851
Tssr108444 11 63271011 to 63271020 9 - TSS region transcription start site region 108444
Tssr102107 11 63271400 to 63271411 11 + TSS region transcription start site region 102107
D11Mit350 11 63294341 to 63294436 95 DNA segment DNA Segment, Chr 11 Massachusetts Institute of Technology 350
Bbaa4 11 63294341 to 63294436 95 QTL B.burgdorferi-associated arthritis 4
Gm12286 11 63312310 to 63313311 1001 - pseudogene predicted gene 12286
Tssr108445 11 63313381 to 63313384 3 - TSS region transcription start site region 108445
B130011K05Rik 11 63413169 to 63417888 4719 + lincRNA gene RIKEN cDNA B130011K05 gene
Bmd11 11 63428581 to 63428696 115 QTL bone mineral density 11
D11Mit242 11 63428581 to 63428696 115 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 242
Lmr15 11 63428581 to 81939647 18511066 QTL leishmaniasis resistance 15
Stzid3 11 63428581 to 94173092 30744511 QTL streptozotocin induced diabetes susceptibility 3
Gm40016 11 63448969 to 63464157 15188 - lncRNA gene predicted gene, 40016
Cpgi3040 11 63463826 to 63464018 192 CpG island CpG island 3040
Tssr108446 11 63463921 to 63463932 11 - TSS region transcription start site region 108446
Tssr108447 11 63463955 to 63463974 19 - TSS region transcription start site region 108447
Tssr108448 11 63464079 to 63464114 35 - TSS region transcription start site region 108448
D11Mit156 11 63510408 to 63510519 111 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 156
Gm12287 11 63599632 to 63600923 1291 - pseudogene predicted gene 12287
Gm40019 11 63612829 to 63615792 2963 - lncRNA gene predicted gene, 40019
Gm29958 11 63619192 to 63644391 25199 + protein coding gene predicted gene, 29958
Gm12288 11 63817019 to 63818300 1281 - pseudogene predicted gene 12288
Hmgb1-ps3 11 63846183 to 63846818 635 - pseudogene high mobility group box 1, pseudogene 3
Hs3st3b1 11 63885792 to 63922290 36498 - protein coding gene heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1
Tssr108449 11 63887765 to 63887769 4 - TSS region transcription start site region 108449
Cpgi3041 11 63888932 to 63889247 315 CpG island CpG island 3041
Cpgi3042 11 63914417 to 63914687 270 CpG island CpG island 3042
Cpgi3043 11 63919181 to 63922696 3515 CpG island CpG island 3043
Tssr108450 11 63919630 to 63919634 4 - TSS region transcription start site region 108450
Tssr108451 11 63922257 to 63922292 35 - TSS region transcription start site region 108451
Tssr108452 11 63922299 to 63922342 43 - TSS region transcription start site region 108452
Cpgi3044 11 63923320 to 63923916 596 CpG island CpG island 3044
Cpgi3045 11 63924372 to 63924685 313 CpG island CpG island 3045
Cpgi3046 11 63925146 to 63925705 559 CpG island CpG island 3046
Cpgi3047 11 63952341 to 63952504 163 CpG island CpG island 3047
Gm30060 11 63956551 to 63962540 5989 + lncRNA gene predicted gene, 30060
Cox10 11 63962627 to 64079468 116841 - protein coding gene heme A:farnesyltransferase cytochrome c oxidase assembly factor 10
Tssr102108 11 63963890 to 63963895 5 + TSS region transcription start site region 102108
9630013K17Rik 11 63964226 to 63968040 3814 + antisense lncRNA gene RIKEN cDNA 9630013K17 gene
Tssr102109 11 63966071 to 63966080 9 + TSS region transcription start site region 102109
Tssr108453 11 63975295 to 63975304 9 - TSS region transcription start site region 108453
Tssr102110 11 63989691 to 63989700 9 + TSS region transcription start site region 102110
Tssr102111 11 63989707 to 63989729 22 + TSS region transcription start site region 102111
Tssr102112 11 63989740 to 63989743 3 + TSS region transcription start site region 102112
Tssr102113 11 63989767 to 63989772 5 + TSS region transcription start site region 102113
Tssr102114 11 63989793 to 63989801 8 + TSS region transcription start site region 102114
Tssr102115 11 63989874 to 63989883 9 + TSS region transcription start site region 102115
D11Mit339 11 63992937 to 63993061 124 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 339
Gm12289 11 64012615 to 64015224 2609 + antisense lncRNA gene predicted gene 12289
Tssr108454 11 64060206 to 64060225 19 - TSS region transcription start site region 108454
Tssr108455 11 64060232 to 64060247 15 - TSS region transcription start site region 108455
Cpgi3048 11 64079157 to 64079751 594 CpG island CpG island 3048
Tssr108456 11 64079444 to 64079480 36 - TSS region transcription start site region 108456
Tssr102116 11 64079478 to 64079527 49 + TSS region transcription start site region 102116
2810001G20Rik 11 64079484 to 64083259 3775 + antisense lncRNA gene RIKEN cDNA 2810001G20 gene
Tssr102117 11 64079547 to 64079574 27 + TSS region transcription start site region 102117
Tssr102118 11 64079613 to 64079624 11 + TSS region transcription start site region 102118
Gm12290 11 64164573 to 64182171 17598 + lincRNA gene predicted gene 12290
Tssr108457 11 64209041 to 64209052 11 - TSS region transcription start site region 108457
Cpgi3049 11 64434961 to 64436790 1829 CpG island CpG island 3049
F930015N05Rik 11 64435156 to 64436653 1497 - unclassified gene RIKEN cDNA F930015N05 gene
Tssr102119 11 64435315 to 64435339 24 + TSS region transcription start site region 102119
Hs3st3a1 11 64435332 to 64522835 87503 + protein coding gene heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1
Tssr102120 11 64438526 to 64438531 5 + TSS region transcription start site region 102120
Cpgi3050 11 64520099 to 64520334 235 CpG island CpG island 3050
Gm24275 11 64590495 to 64590640 145 - miRNA gene predicted gene, 24275
Gm30305 11 64662793 to 64719258 56465 - lncRNA gene predicted gene, 30305
Tssr102121 11 64741594 to 64741600 6 + TSS region transcription start site region 102121
Gm12291 11 64759717 to 64760027 310 - pseudogene predicted gene 12291
Tssr108458 11 64774640 to 64774644 4 - TSS region transcription start site region 108458
Tssr102122 11 64800740 to 64800757 17 + TSS region transcription start site region 102122
Gm12292 11 64840600 to 64843753 3153 - lincRNA gene predicted gene 12292
Gm40025 11 64842114 to 64843917 1803 + lncRNA gene predicted gene, 40025
Cpgi3051 11 64978739 to 64979497 758 CpG island CpG island 3051
Tssr102123 11 64979025 to 64979110 85 + TSS region transcription start site region 102123
Elac2 11 64979038 to 65002069 23031 + protein coding gene elaC ribonuclease Z 2
Tssr102124 11 64979121 to 64979136 15 + TSS region transcription start site region 102124
Cpgi3052 11 65001789 to 65002013 224 CpG island CpG island 3052
Arhgap44 11 65002039 to 65162961 160922 - protein coding gene Rho GTPase activating protein 44
Tssr108459 11 65003078 to 65003082 4 - TSS region transcription start site region 108459
Tssr3518 11 65009943 to 65009974 31 - TSS region transcription start site region 3518
Tssr108460 11 65031723 to 65031730 7 - TSS region transcription start site region 108460
Tssr3519 11 65032231 to 65032237 6 + TSS region transcription start site region 3519
Tssr108461 11 65032402 to 65032413 11 - TSS region transcription start site region 108461
Tssr108462 11 65032432 to 65032447 15 - TSS region transcription start site region 108462
Gm12294 11 65037052 to 65037541 489 - pseudogene predicted gene 12294
Gm25991 11 65067709 to 65067807 98 - miRNA gene predicted gene, 25991
Tssr3520 11 65096403 to 65096406 3 + TSS region transcription start site region 3520
C030044O21Rik 11 65145187 to 65147937 2750 unclassified gene RIKEN cDNA C030044O21 gene
1700086D15Rik 11 65152617 to 65158343 5726 - protein coding gene RIKEN cDNA 1700086D15 gene
Tssr102125 11 65159957 to 65159984 27 + TSS region transcription start site region 102125
Cpgi3053 11 65162085 to 65163122 1037 CpG island CpG island 3053
B430202K04Rik 11 65162131 to 65164065 1934 protein coding gene RIKEN cDNA B430202K04 gene
Tssr108463 11 65162907 to 65162976 69 - TSS region transcription start site region 108463
Gm12293 11 65169844 to 65170364 520 - pseudogene predicted gene 12293
Tssr108464 11 65174384 to 65174391 7 - TSS region transcription start site region 108464