Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:62513642-63803702

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192 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Acigg5 11 46528416 to 62992617 16464201 QTL anti COL7 IgG2a/c antibody 5
Spqq1 11 54174844 to 63428696 9253852 QTL sperm quality QTL 1
Pigl 11 62458460 to 62513900 55440 + protein coding gene phosphatidylinositol glycan anchor biosynthesis, class L
Gm12949 11 62522741 to 62523542 801 + antisense lncRNA gene predicted gene 12949
Cenpv 11 62524946 to 62539261 14315 - protein coding gene centromere protein V
Tssr108419 11 62537249 to 62537253 4 - TSS region transcription start site region 108419
Cpgi3023 11 62538443 to 62539626 1183 CpG island CpG island 3023
Tssr108420 11 62538883 to 62538898 15 - TSS region transcription start site region 108420
Tssr108421 11 62538904 to 62538923 19 - TSS region transcription start site region 108421
Tssr108422 11 62539023 to 62539032 9 - TSS region transcription start site region 108422
Tssr108423 11 62539041 to 62539072 31 - TSS region transcription start site region 108423
Tssr108424 11 62539091 to 62539131 40 - TSS region transcription start site region 108424
Tssr108425 11 62539183 to 62539194 11 - TSS region transcription start site region 108425
Tssr108426 11 62539199 to 62539253 54 - TSS region transcription start site region 108426
Tssr108427 11 62539257 to 62539264 7 - TSS region transcription start site region 108427
Tssr108428 11 62539281 to 62539288 7 - TSS region transcription start site region 108428
Tssr108429 11 62544812 to 62544827 15 - TSS region transcription start site region 108429
Gm12279 11 62550047 to 62551041 994 - antisense lncRNA gene predicted gene 12279
Tssr102022 11 62550523 to 62550545 22 + TSS region transcription start site region 102022
Tssr102023 11 62550570 to 62550600 30 + TSS region transcription start site region 102023
Cpgi3024 11 62550694 to 62551945 1251 CpG island CpG island 3024
Tssr102024 11 62550809 to 62550857 48 + TSS region transcription start site region 102024
Tssr108430 11 62550940 to 62550980 40 - TSS region transcription start site region 108430
Tssr108431 11 62550993 to 62551019 26 - TSS region transcription start site region 108431
Tssr102025 11 62551167 to 62551191 24 + TSS region transcription start site region 102025
Ubb 11 62551171 to 62553213 2042 + protein coding gene ubiquitin B
Tssr102026 11 62551234 to 62551246 12 + TSS region transcription start site region 102026
Tssr102027 11 62551262 to 62551285 23 + TSS region transcription start site region 102027
Tssr102028 11 62551448 to 62551457 9 + TSS region transcription start site region 102028
Tssr102029 11 62551461 to 62551477 16 + TSS region transcription start site region 102029
Tssr102030 11 62551493 to 62551503 10 + TSS region transcription start site region 102030
Tssr102031 11 62551721 to 62551735 14 + TSS region transcription start site region 102031
Tssr102032 11 62551738 to 62551739 1 + TSS region transcription start site region 102032
Tssr102033 11 62551756 to 62551770 14 + TSS region transcription start site region 102033
Tssr102034 11 62551774 to 62551821 47 + TSS region transcription start site region 102034
Tssr102035 11 62551848 to 62551859 11 + TSS region transcription start site region 102035
Tssr102036 11 62554674 to 62554679 5 + TSS region transcription start site region 102036
Cpgi3025 11 62560453 to 62561016 563 CpG island CpG island 3025
Tssr102037 11 62560491 to 62560496 5 + TSS region transcription start site region 102037
Gm12280 11 62564477 to 62566383 1906 - antisense lncRNA gene predicted gene 12280
Tssr108432 11 62574082 to 62574085 3 - TSS region transcription start site region 108432
Tssr102038 11 62574477 to 62574522 45 + TSS region transcription start site region 102038
Trpv2 11 62574486 to 62600305 25819 + protein coding gene transient receptor potential cation channel, subfamily V, member 2
Tssr102039 11 62574523 to 62574552 29 + TSS region transcription start site region 102039
Tssr102040 11 62574573 to 62574584 11 + TSS region transcription start site region 102040
Tssr102041 11 62575618 to 62575642 24 + TSS region transcription start site region 102041
Cpgi3026 11 62575825 to 62576231 406 CpG island CpG island 3026
Tssr102042 11 62575877 to 62575890 13 + TSS region transcription start site region 102042
Tssr102043 11 62575897 to 62575933 36 + TSS region transcription start site region 102043
Tssr102044 11 62575935 to 62575964 29 + TSS region transcription start site region 102044
Tssr102045 11 62575981 to 62575992 11 + TSS region transcription start site region 102045
Tssr102046 11 62576025 to 62576032 7 + TSS region transcription start site region 102046
Tssr102047 11 62583898 to 62583921 23 + TSS region transcription start site region 102047
Cpgi3027 11 62602482 to 62603503 1021 CpG island CpG island 3027
Tssr102048 11 62602867 to 62602886 19 + TSS region transcription start site region 102048
2410006H16Rik 11 62602877 to 62604806 1929 + lncRNA gene RIKEN cDNA 2410006H16 gene
Tssr102049 11 62602957 to 62602991 34 + TSS region transcription start site region 102049
Tssr102050 11 62603061 to 62603078 17 + TSS region transcription start site region 102050
Snord49b 11 62603086 to 62603148 62 + snoRNA gene small nucleolar RNA, C/D box 49B
Tssr102051 11 62603115 to 62603166 51 + TSS region transcription start site region 102051
Tssr102052 11 62603181 to 62603192 11 + TSS region transcription start site region 102052
Tssr102053 11 62603447 to 62603457 10 + TSS region transcription start site region 102053
Snord49a 11 62603460 to 62603521 61 + snoRNA gene small nucleolar RNA, C/D box 49A
Snord65 11 62604530 to 62604586 56 + snoRNA gene small nucleolar RNA, C/D box 65
Lrrc75a 11 62604884 to 62648523 43639 - protein coding gene leucine rich repeat containing 75A
Tssr102054 11 62605728 to 62605778 50 + TSS region transcription start site region 102054
Lrrc75aos2 11 62605766 to 62607748 1982 + antisense lncRNA gene leucine rich repeat containing 75A, opposite strand 2
Tssr108433 11 62617134 to 62617138 4 - TSS region transcription start site region 108433
Lrrc75aos1 11 62634704 to 62638788 4084 + antisense lncRNA gene leucine rich repeat containing 75A, opposite strand 1
Cpgi3028 11 62647743 to 62649143 1400 CpG island CpG island 3028
Tssr108434 11 62648034 to 62648050 16 - TSS region transcription start site region 108434
Tssr3517 11 62648155 to 62648188 33 + TSS region transcription start site region 3517
Tssr108435 11 62648458 to 62648514 56 - TSS region transcription start site region 108435
Tssr108436 11 62648563 to 62648591 28 - TSS region transcription start site region 108436
Tssr102055 11 62648656 to 62648685 29 + TSS region transcription start site region 102055
Mmgt2 11 62648664 to 62666354 17690 + protein coding gene membrane magnesium transporter 2
Tssr102056 11 62648686 to 62648700 14 + TSS region transcription start site region 102056
Tssr102057 11 62648766 to 62648781 15 + TSS region transcription start site region 102057
Tssr102058 11 62648782 to 62648790 8 + TSS region transcription start site region 102058
Tssr102059 11 62648811 to 62648828 17 + TSS region transcription start site region 102059
Tssr102060 11 62648830 to 62648839 9 + TSS region transcription start site region 102060
Tssr102061 11 62650487 to 62650502 15 + TSS region transcription start site region 102061
Cpgi3029 11 62664714 to 62665124 410 CpG island CpG island 3029
Gm12281 11 62697218 to 62697515 297 + pseudogene predicted gene 12281
Zfp287 11 62700356 to 62731905 31549 - protein coding gene zinc finger protein 287
Cpgi3030 11 62731454 to 62732114 660 CpG island CpG island 3030
Tssr108437 11 62731865 to 62731910 45 - TSS region transcription start site region 108437
Cpgi3031 11 62745982 to 62746481 499 CpG island CpG island 3031
n-TWcca8 11 62746015 to 62746086 71 - tRNA gene nuclear encoded tRNA trytophan 8 (anticodon CCA)
Gm27194 11 62749852 to 62752787 2935 + lincRNA gene predicted gene 27194
Wsb2-ps 11 62750064 to 62751280 1216 - pseudogene WD repeat and SOCS box-containing 2, pseudogene
Cpgi3032 11 62751094 to 62751445 351 CpG island CpG island 3032
Gm10428 11 62753100 to 62753498 398 + protein coding gene predicted gene 10428
Cpgi3033 11 62756670 to 62757284 614 CpG island CpG island 3033
Tssr108438 11 62760525 to 62760568 43 - TSS region transcription start site region 108438
Tssr102062 11 62760601 to 62760628 27 + TSS region transcription start site region 102062
Tssr102063 11 62761027 to 62761051 24 + TSS region transcription start site region 102063
Zfp286os 11 62761236 to 62765554 4318 + antisense lncRNA gene zinc finger protein 286, opposite strand
Gm24151 11 62776985 to 62777125 140 + snoRNA gene predicted gene, 24151
Zfp286 11 62778387 to 62789483 11096 - protein coding gene zinc finger protein 286
Cpgi3034 11 62789009 to 62789778 769 CpG island CpG island 3034
Tssr108439 11 62789402 to 62789443 41 - TSS region transcription start site region 108439
Tssr108440 11 62789445 to 62789478 33 - TSS region transcription start site region 108440
Trim16 11 62820191 to 62842948 22757 + protein coding gene tripartite motif-containing 16
Tssr102064 11 62820430 to 62820447 17 + TSS region transcription start site region 102064
Tssr102065 11 62820471 to 62820489 18 + TSS region transcription start site region 102065
Tssr102066 11 62842755 to 62842760 5 + TSS region transcription start site region 102066
Tssr102067 11 62847062 to 62847087 25 + TSS region transcription start site region 102067
Fbxw10 11 62847069 to 62877465 30396 + protein coding gene F-box and WD-40 domain protein 10
Tssr102068 11 62847090 to 62847103 13 + TSS region transcription start site region 102068
Tssr102069 11 62847111 to 62847132 21 + TSS region transcription start site region 102069
Tssr102070 11 62862109 to 62862114 5 + TSS region transcription start site region 102070
Cpgi3035 11 62879274 to 62880070 796 CpG island CpG island 3035
Tvp23b 11 62879435 to 62895186 15751 + protein coding gene trans-golgi network vesicle protein 23B
Tssr102071 11 62879449 to 62879536 87 + TSS region transcription start site region 102071
Tssr102072 11 62879560 to 62879580 20 + TSS region transcription start site region 102072
Tssr108441 11 62915532 to 62915535 3 - TSS region transcription start site region 108441
Tvp23bos 11 62919079 to 62921592 2513 - antisense lncRNA gene trans-golgi network vesicle protein 23B, opposite strand
Gm36614 11 62933253 to 62939590 6337 + lncRNA gene predicted gene, 36614
Cdrt4os2 11 62950425 to 62951079 654 - antisense lncRNA gene CMT1A duplicated region transcript 4, opposite strand 2
Tssr108442 11 62951095 to 62951110 15 - TSS region transcription start site region 108442
Tssr102073 11 62951155 to 62951159 4 + TSS region transcription start site region 102073
Tssr102074 11 62951178 to 62951185 7 + TSS region transcription start site region 102074
Tssr102075 11 62951191 to 62951195 4 + TSS region transcription start site region 102075
Cdrt4 11 62951193 to 62993095 41902 + protein coding gene CMT1A duplicated region transcript 4
Tssr102076 11 62951197 to 62951231 34 + TSS region transcription start site region 102076
Cdrt4os1 11 62990453 to 63004134 13681 - antisense lncRNA gene CMT1A duplicated region transcript 4, opposite strand 1
Gm46284 11 62994326 to 63000140 5814 + lncRNA gene predicted gene, 46284
Tssr102077 11 63046737 to 63046770 33 + TSS region transcription start site region 102077
Gm36874 11 63051209 to 63056102 4893 + lncRNA gene predicted gene, 36874
Tssr102078 11 63051326 to 63051341 15 + TSS region transcription start site region 102078
Cpgi3036 11 63061558 to 63061773 215 CpG island CpG island 3036
Tssr102079 11 63061599 to 63061676 77 + TSS region transcription start site region 102079
Tekt3 11 63061659 to 63094960 33301 + protein coding gene tektin 3
Gm36926 11 63090087 to 63119259 29172 - lncRNA gene predicted gene, 36926
Tssr102080 11 63115306 to 63115313 7 + TSS region transcription start site region 102080
Tssr108443 11 63119257 to 63119268 11 - TSS region transcription start site region 108443
Tssr102081 11 63128973 to 63128990 17 + TSS region transcription start site region 102081
Pmp22 11 63128982 to 63159547 30565 + protein coding gene peripheral myelin protein 22
Tssr102082 11 63128995 to 63129006 11 + TSS region transcription start site region 102082
Tssr102083 11 63129027 to 63129036 9 + TSS region transcription start site region 102083
Cpgi3037 11 63131420 to 63131622 202 CpG island CpG island 3037
Tssr102084 11 63131502 to 63131509 7 + TSS region transcription start site region 102084
Tssr102085 11 63131516 to 63131539 23 + TSS region transcription start site region 102085
Tssr102086 11 63131553 to 63131570 17 + TSS region transcription start site region 102086
Cpgi3038 11 63132368 to 63133393 1025 CpG island CpG island 3038
Tssr102087 11 63132648 to 63132677 29 + TSS region transcription start site region 102087
Tssr102088 11 63133068 to 63133075 7 + TSS region transcription start site region 102088
Tssr102089 11 63133092 to 63133129 37 + TSS region transcription start site region 102089
Tssr102090 11 63133136 to 63133145 9 + TSS region transcription start site region 102090
Tssr102091 11 63133172 to 63133177 5 + TSS region transcription start site region 102091
Tssr102092 11 63134454 to 63134468 14 + TSS region transcription start site region 102092
Tssr102093 11 63146642 to 63146646 4 + TSS region transcription start site region 102093
Tssr102094 11 63151113 to 63151145 32 + TSS region transcription start site region 102094
Tssr102095 11 63151213 to 63151234 21 + TSS region transcription start site region 102095
Ltxs2 11 63151287 to 68609504 5458217 QTL lethal factor toxin susceptibility 2
D11Mit88 11 63151287 to 63151537 250 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 88
Tssr102096 11 63157874 to 63157878 4 + TSS region transcription start site region 102096
Tssr102097 11 63158343 to 63158368 25 + TSS region transcription start site region 102097
Tssr102098 11 63158414 to 63158434 20 + TSS region transcription start site region 102098
Tssr102099 11 63158441 to 63158460 19 + TSS region transcription start site region 102099
Tssr102100 11 63158471 to 63158482 11 + TSS region transcription start site region 102100
Tssr102101 11 63158514 to 63158559 45 + TSS region transcription start site region 102101
Tssr102102 11 63158562 to 63158596 34 + TSS region transcription start site region 102102
Tssr102103 11 63158642 to 63158702 60 + TSS region transcription start site region 102103
Tssr102104 11 63158757 to 63158783 26 + TSS region transcription start site region 102104
Tssr102105 11 63158796 to 63158811 15 + TSS region transcription start site region 102105
Tssr102106 11 63158816 to 63158831 15 + TSS region transcription start site region 102106
B430319H21Rik 11 63173914 to 63188454 14540 + lincRNA gene RIKEN cDNA B430319H21 gene
Cpgi3039 11 63213898 to 63214056 158 CpG island CpG island 3039
Gm12285 11 63241248 to 63241445 197 - pseudogene predicted gene 12285
Gm29851 11 63247297 to 63250153 2856 - lncRNA gene predicted gene, 29851
Tssr108444 11 63271011 to 63271020 9 - TSS region transcription start site region 108444
Tssr102107 11 63271400 to 63271411 11 + TSS region transcription start site region 102107
D11Mit350 11 63294341 to 63294436 95 DNA segment DNA Segment, Chr 11 Massachusetts Institute of Technology 350
Bbaa4 11 63294341 to 63294436 95 QTL B.burgdorferi-associated arthritis 4
Gm12286 11 63312310 to 63313311 1001 - pseudogene predicted gene 12286
Tssr108445 11 63313381 to 63313384 3 - TSS region transcription start site region 108445
B130011K05Rik 11 63413169 to 63417888 4719 + lincRNA gene RIKEN cDNA B130011K05 gene
D11Mit242 11 63428581 to 63428696 115 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 242
Bmd11 11 63428581 to 63428696 115 QTL bone mineral density 11
Lmr15 11 63428581 to 81939647 18511066 QTL leishmaniasis resistance 15
Stzid3 11 63428581 to 94173092 30744511 QTL streptozotocin induced diabetes susceptibility 3
Gm40016 11 63448969 to 63464157 15188 - lncRNA gene predicted gene, 40016
Cpgi3040 11 63463826 to 63464018 192 CpG island CpG island 3040
Tssr108446 11 63463921 to 63463932 11 - TSS region transcription start site region 108446
Tssr108447 11 63463955 to 63463974 19 - TSS region transcription start site region 108447
Tssr108448 11 63464079 to 63464114 35 - TSS region transcription start site region 108448
D11Mit156 11 63510408 to 63510519 111 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 156
Gm12287 11 63599632 to 63600923 1291 - pseudogene predicted gene 12287
Gm40019 11 63612829 to 63615792 2963 - lncRNA gene predicted gene, 40019
Gm29958 11 63619192 to 63644391 25199 + protein coding gene predicted gene, 29958