Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:62458172-63808177

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216 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Acigg5 11 46528416 to 62992617 16464201 QTL anti COL7 IgG2a/c antibody 5
Spqq1 11 54174844 to 63428696 9253852 QTL sperm quality QTL 1
Ncor1 11 62316426 to 62458541 142115 - protein coding gene nuclear receptor co-repressor 1
Cpgi3022 11 62456621 to 62458774 2153 CpG island CpG island 3022
Tssr108410 11 62458352 to 62458390 38 - TSS region transcription start site region 108410
Tssr102010 11 62458414 to 62458469 55 + TSS region transcription start site region 102010
Pigl 11 62458460 to 62513900 55440 + protein coding gene phosphatidylinositol glycan anchor biosynthesis, class L
Tssr108411 11 62458508 to 62458548 40 - TSS region transcription start site region 108411
Tssr102011 11 62458582 to 62458600 18 + TSS region transcription start site region 102011
Tssr102012 11 62458616 to 62458629 13 + TSS region transcription start site region 102012
Tssr108412 11 62458698 to 62458719 21 - TSS region transcription start site region 108412
Tssr108413 11 62463331 to 62463341 10 - TSS region transcription start site region 108413
Tssr108414 11 62463355 to 62463368 13 - TSS region transcription start site region 108414
Tssr108415 11 62466479 to 62466498 19 - TSS region transcription start site region 108415
Tssr108416 11 62466568 to 62466570 2 - TSS region transcription start site region 108416
Gm12278 11 62482797 to 62501704 18907 + antisense lncRNA gene predicted gene 12278
Tssr108417 11 62494795 to 62494812 17 - TSS region transcription start site region 108417
Tssr102013 11 62509085 to 62509106 21 + TSS region transcription start site region 102013
Tssr102014 11 62509319 to 62509326 7 + TSS region transcription start site region 102014
Tssr108418 11 62510936 to 62510958 22 - TSS region transcription start site region 108418
Tssr102015 11 62511687 to 62511691 4 + TSS region transcription start site region 102015
Tssr102016 11 62511709 to 62511731 22 + TSS region transcription start site region 102016
Tssr102017 11 62511743 to 62511751 8 + TSS region transcription start site region 102017
Tssr102018 11 62511762 to 62511769 7 + TSS region transcription start site region 102018
Tssr102019 11 62511940 to 62511951 11 + TSS region transcription start site region 102019
Tssr102020 11 62512152 to 62512163 11 + TSS region transcription start site region 102020
Tssr102021 11 62512420 to 62512426 6 + TSS region transcription start site region 102021
Gm12949 11 62522741 to 62523542 801 + antisense lncRNA gene predicted gene 12949
Cenpv 11 62524946 to 62539261 14315 - protein coding gene centromere protein V
Tssr108419 11 62537249 to 62537253 4 - TSS region transcription start site region 108419
Cpgi3023 11 62538443 to 62539626 1183 CpG island CpG island 3023
Tssr108420 11 62538883 to 62538898 15 - TSS region transcription start site region 108420
Tssr108421 11 62538904 to 62538923 19 - TSS region transcription start site region 108421
Tssr108422 11 62539023 to 62539032 9 - TSS region transcription start site region 108422
Tssr108423 11 62539041 to 62539072 31 - TSS region transcription start site region 108423
Tssr108424 11 62539091 to 62539131 40 - TSS region transcription start site region 108424
Tssr108425 11 62539183 to 62539194 11 - TSS region transcription start site region 108425
Tssr108426 11 62539199 to 62539253 54 - TSS region transcription start site region 108426
Tssr108427 11 62539257 to 62539264 7 - TSS region transcription start site region 108427
Tssr108428 11 62539281 to 62539288 7 - TSS region transcription start site region 108428
Tssr108429 11 62544812 to 62544827 15 - TSS region transcription start site region 108429
Gm12279 11 62550047 to 62551041 994 - antisense lncRNA gene predicted gene 12279
Tssr102022 11 62550523 to 62550545 22 + TSS region transcription start site region 102022
Tssr102023 11 62550570 to 62550600 30 + TSS region transcription start site region 102023
Cpgi3024 11 62550694 to 62551945 1251 CpG island CpG island 3024
Tssr102024 11 62550809 to 62550857 48 + TSS region transcription start site region 102024
Tssr108430 11 62550940 to 62550980 40 - TSS region transcription start site region 108430
Tssr108431 11 62550993 to 62551019 26 - TSS region transcription start site region 108431
Tssr102025 11 62551167 to 62551191 24 + TSS region transcription start site region 102025
Ubb 11 62551171 to 62553213 2042 + protein coding gene ubiquitin B
Tssr102026 11 62551234 to 62551246 12 + TSS region transcription start site region 102026
Tssr102027 11 62551262 to 62551285 23 + TSS region transcription start site region 102027
Tssr102028 11 62551448 to 62551457 9 + TSS region transcription start site region 102028
Tssr102029 11 62551461 to 62551477 16 + TSS region transcription start site region 102029
Tssr102030 11 62551493 to 62551503 10 + TSS region transcription start site region 102030
Tssr102031 11 62551721 to 62551735 14 + TSS region transcription start site region 102031
Tssr102032 11 62551738 to 62551739 1 + TSS region transcription start site region 102032
Tssr102033 11 62551756 to 62551770 14 + TSS region transcription start site region 102033
Tssr102034 11 62551774 to 62551821 47 + TSS region transcription start site region 102034
Tssr102035 11 62551848 to 62551859 11 + TSS region transcription start site region 102035
Tssr102036 11 62554674 to 62554679 5 + TSS region transcription start site region 102036
Cpgi3025 11 62560453 to 62561016 563 CpG island CpG island 3025
Tssr102037 11 62560491 to 62560496 5 + TSS region transcription start site region 102037
Gm12280 11 62564477 to 62566383 1906 - antisense lncRNA gene predicted gene 12280
Tssr108432 11 62574082 to 62574085 3 - TSS region transcription start site region 108432
Tssr102038 11 62574477 to 62574522 45 + TSS region transcription start site region 102038
Trpv2 11 62574486 to 62600305 25819 + protein coding gene transient receptor potential cation channel, subfamily V, member 2
Tssr102039 11 62574523 to 62574552 29 + TSS region transcription start site region 102039
Tssr102040 11 62574573 to 62574584 11 + TSS region transcription start site region 102040
Tssr102041 11 62575618 to 62575642 24 + TSS region transcription start site region 102041
Cpgi3026 11 62575825 to 62576231 406 CpG island CpG island 3026
Tssr102042 11 62575877 to 62575890 13 + TSS region transcription start site region 102042
Tssr102043 11 62575897 to 62575933 36 + TSS region transcription start site region 102043
Tssr102044 11 62575935 to 62575964 29 + TSS region transcription start site region 102044
Tssr102045 11 62575981 to 62575992 11 + TSS region transcription start site region 102045
Tssr102046 11 62576025 to 62576032 7 + TSS region transcription start site region 102046
Tssr102047 11 62583898 to 62583921 23 + TSS region transcription start site region 102047
Cpgi3027 11 62602482 to 62603503 1021 CpG island CpG island 3027
Tssr102048 11 62602867 to 62602886 19 + TSS region transcription start site region 102048
2410006H16Rik 11 62602877 to 62604806 1929 + lncRNA gene RIKEN cDNA 2410006H16 gene
Tssr102049 11 62602957 to 62602991 34 + TSS region transcription start site region 102049
Tssr102050 11 62603061 to 62603078 17 + TSS region transcription start site region 102050
Snord49b 11 62603086 to 62603148 62 + snoRNA gene small nucleolar RNA, C/D box 49B
Tssr102051 11 62603115 to 62603166 51 + TSS region transcription start site region 102051
Tssr102052 11 62603181 to 62603192 11 + TSS region transcription start site region 102052
Tssr102053 11 62603447 to 62603457 10 + TSS region transcription start site region 102053
Snord49a 11 62603460 to 62603521 61 + snoRNA gene small nucleolar RNA, C/D box 49A
Snord65 11 62604530 to 62604586 56 + snoRNA gene small nucleolar RNA, C/D box 65
Lrrc75a 11 62604884 to 62648523 43639 - protein coding gene leucine rich repeat containing 75A
Tssr102054 11 62605728 to 62605778 50 + TSS region transcription start site region 102054
Lrrc75aos2 11 62605766 to 62607748 1982 + antisense lncRNA gene leucine rich repeat containing 75A, opposite strand 2
Tssr108433 11 62617134 to 62617138 4 - TSS region transcription start site region 108433
Lrrc75aos1 11 62634704 to 62638788 4084 + antisense lncRNA gene leucine rich repeat containing 75A, opposite strand 1
Cpgi3028 11 62647743 to 62649143 1400 CpG island CpG island 3028
Tssr108434 11 62648034 to 62648050 16 - TSS region transcription start site region 108434
Tssr3517 11 62648155 to 62648188 33 + TSS region transcription start site region 3517
Tssr108435 11 62648458 to 62648514 56 - TSS region transcription start site region 108435
Tssr108436 11 62648563 to 62648591 28 - TSS region transcription start site region 108436
Tssr102055 11 62648656 to 62648685 29 + TSS region transcription start site region 102055
Mmgt2 11 62648664 to 62666354 17690 + protein coding gene membrane magnesium transporter 2
Tssr102056 11 62648686 to 62648700 14 + TSS region transcription start site region 102056
Tssr102057 11 62648766 to 62648781 15 + TSS region transcription start site region 102057
Tssr102058 11 62648782 to 62648790 8 + TSS region transcription start site region 102058
Tssr102059 11 62648811 to 62648828 17 + TSS region transcription start site region 102059
Tssr102060 11 62648830 to 62648839 9 + TSS region transcription start site region 102060
Tssr102061 11 62650487 to 62650502 15 + TSS region transcription start site region 102061
Cpgi3029 11 62664714 to 62665124 410 CpG island CpG island 3029
Gm12281 11 62697218 to 62697515 297 + pseudogene predicted gene 12281
Zfp287 11 62700356 to 62731905 31549 - protein coding gene zinc finger protein 287
Cpgi3030 11 62731454 to 62732114 660 CpG island CpG island 3030
Tssr108437 11 62731865 to 62731910 45 - TSS region transcription start site region 108437
Cpgi3031 11 62745982 to 62746481 499 CpG island CpG island 3031
n-TWcca8 11 62746015 to 62746086 71 - tRNA gene nuclear encoded tRNA trytophan 8 (anticodon CCA)
Gm27194 11 62749852 to 62752787 2935 + lincRNA gene predicted gene 27194
Wsb2-ps 11 62750064 to 62751280 1216 - pseudogene WD repeat and SOCS box-containing 2, pseudogene
Cpgi3032 11 62751094 to 62751445 351 CpG island CpG island 3032
Gm10428 11 62753100 to 62753498 398 + protein coding gene predicted gene 10428
Cpgi3033 11 62756670 to 62757284 614 CpG island CpG island 3033
Tssr108438 11 62760525 to 62760568 43 - TSS region transcription start site region 108438
Tssr102062 11 62760601 to 62760628 27 + TSS region transcription start site region 102062
Tssr102063 11 62761027 to 62761051 24 + TSS region transcription start site region 102063
Zfp286os 11 62761236 to 62765554 4318 + antisense lncRNA gene zinc finger protein 286, opposite strand
Gm24151 11 62776985 to 62777125 140 + snoRNA gene predicted gene, 24151
Zfp286 11 62778387 to 62789483 11096 - protein coding gene zinc finger protein 286
Cpgi3034 11 62789009 to 62789778 769 CpG island CpG island 3034
Tssr108439 11 62789402 to 62789443 41 - TSS region transcription start site region 108439
Tssr108440 11 62789445 to 62789478 33 - TSS region transcription start site region 108440
Trim16 11 62820191 to 62842948 22757 + protein coding gene tripartite motif-containing 16
Tssr102064 11 62820430 to 62820447 17 + TSS region transcription start site region 102064
Tssr102065 11 62820471 to 62820489 18 + TSS region transcription start site region 102065
Tssr102066 11 62842755 to 62842760 5 + TSS region transcription start site region 102066
Tssr102067 11 62847062 to 62847087 25 + TSS region transcription start site region 102067
Fbxw10 11 62847069 to 62877465 30396 + protein coding gene F-box and WD-40 domain protein 10
Tssr102068 11 62847090 to 62847103 13 + TSS region transcription start site region 102068
Tssr102069 11 62847111 to 62847132 21 + TSS region transcription start site region 102069
Tssr102070 11 62862109 to 62862114 5 + TSS region transcription start site region 102070
Cpgi3035 11 62879274 to 62880070 796 CpG island CpG island 3035
Tvp23b 11 62879435 to 62895186 15751 + protein coding gene trans-golgi network vesicle protein 23B
Tssr102071 11 62879449 to 62879536 87 + TSS region transcription start site region 102071
Tssr102072 11 62879560 to 62879580 20 + TSS region transcription start site region 102072
Tssr108441 11 62915532 to 62915535 3 - TSS region transcription start site region 108441
Tvp23bos 11 62919079 to 62921592 2513 - antisense lncRNA gene trans-golgi network vesicle protein 23B, opposite strand
Gm36614 11 62933253 to 62939590 6337 + lncRNA gene predicted gene, 36614
Cdrt4os2 11 62950425 to 62951079 654 - antisense lncRNA gene CMT1A duplicated region transcript 4, opposite strand 2
Tssr108442 11 62951095 to 62951110 15 - TSS region transcription start site region 108442
Tssr102073 11 62951155 to 62951159 4 + TSS region transcription start site region 102073
Tssr102074 11 62951178 to 62951185 7 + TSS region transcription start site region 102074
Tssr102075 11 62951191 to 62951195 4 + TSS region transcription start site region 102075
Cdrt4 11 62951193 to 62993095 41902 + protein coding gene CMT1A duplicated region transcript 4
Tssr102076 11 62951197 to 62951231 34 + TSS region transcription start site region 102076
Cdrt4os1 11 62990453 to 63004134 13681 - antisense lncRNA gene CMT1A duplicated region transcript 4, opposite strand 1
Gm46284 11 62994326 to 63000140 5814 + lncRNA gene predicted gene, 46284
Tssr102077 11 63046737 to 63046770 33 + TSS region transcription start site region 102077
Gm36874 11 63051209 to 63056102 4893 + lncRNA gene predicted gene, 36874
Tssr102078 11 63051326 to 63051341 15 + TSS region transcription start site region 102078
Cpgi3036 11 63061558 to 63061773 215 CpG island CpG island 3036
Tssr102079 11 63061599 to 63061676 77 + TSS region transcription start site region 102079
Tekt3 11 63061659 to 63094960 33301 + protein coding gene tektin 3
Gm36926 11 63090087 to 63119259 29172 - lncRNA gene predicted gene, 36926
Tssr102080 11 63115306 to 63115313 7 + TSS region transcription start site region 102080
Tssr108443 11 63119257 to 63119268 11 - TSS region transcription start site region 108443
Tssr102081 11 63128973 to 63128990 17 + TSS region transcription start site region 102081
Pmp22 11 63128982 to 63159547 30565 + protein coding gene peripheral myelin protein 22
Tssr102082 11 63128995 to 63129006 11 + TSS region transcription start site region 102082
Tssr102083 11 63129027 to 63129036 9 + TSS region transcription start site region 102083
Cpgi3037 11 63131420 to 63131622 202 CpG island CpG island 3037
Tssr102084 11 63131502 to 63131509 7 + TSS region transcription start site region 102084
Tssr102085 11 63131516 to 63131539 23 + TSS region transcription start site region 102085
Tssr102086 11 63131553 to 63131570 17 + TSS region transcription start site region 102086
Cpgi3038 11 63132368 to 63133393 1025 CpG island CpG island 3038
Tssr102087 11 63132648 to 63132677 29 + TSS region transcription start site region 102087
Tssr102088 11 63133068 to 63133075 7 + TSS region transcription start site region 102088
Tssr102089 11 63133092 to 63133129 37 + TSS region transcription start site region 102089
Tssr102090 11 63133136 to 63133145 9 + TSS region transcription start site region 102090
Tssr102091 11 63133172 to 63133177 5 + TSS region transcription start site region 102091
Tssr102092 11 63134454 to 63134468 14 + TSS region transcription start site region 102092
Tssr102093 11 63146642 to 63146646 4 + TSS region transcription start site region 102093
Tssr102094 11 63151113 to 63151145 32 + TSS region transcription start site region 102094
Tssr102095 11 63151213 to 63151234 21 + TSS region transcription start site region 102095
Ltxs2 11 63151287 to 68609504 5458217 QTL lethal factor toxin susceptibility 2
D11Mit88 11 63151287 to 63151537 250 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 88
Tssr102096 11 63157874 to 63157878 4 + TSS region transcription start site region 102096
Tssr102097 11 63158343 to 63158368 25 + TSS region transcription start site region 102097
Tssr102098 11 63158414 to 63158434 20 + TSS region transcription start site region 102098
Tssr102099 11 63158441 to 63158460 19 + TSS region transcription start site region 102099
Tssr102100 11 63158471 to 63158482 11 + TSS region transcription start site region 102100
Tssr102101 11 63158514 to 63158559 45 + TSS region transcription start site region 102101
Tssr102102 11 63158562 to 63158596 34 + TSS region transcription start site region 102102
Tssr102103 11 63158642 to 63158702 60 + TSS region transcription start site region 102103
Tssr102104 11 63158757 to 63158783 26 + TSS region transcription start site region 102104
Tssr102105 11 63158796 to 63158811 15 + TSS region transcription start site region 102105
Tssr102106 11 63158816 to 63158831 15 + TSS region transcription start site region 102106
B430319H21Rik 11 63173914 to 63188454 14540 + lincRNA gene RIKEN cDNA B430319H21 gene
Cpgi3039 11 63213898 to 63214056 158 CpG island CpG island 3039
Gm12285 11 63241248 to 63241445 197 - pseudogene predicted gene 12285
Gm29851 11 63247297 to 63250153 2856 - lncRNA gene predicted gene, 29851
Tssr108444 11 63271011 to 63271020 9 - TSS region transcription start site region 108444
Tssr102107 11 63271400 to 63271411 11 + TSS region transcription start site region 102107
Bbaa4 11 63294341 to 63294436 95 QTL B.burgdorferi-associated arthritis 4
D11Mit350 11 63294341 to 63294436 95 DNA segment DNA Segment, Chr 11 Massachusetts Institute of Technology 350