Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:62211013-62571042

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100 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Specc1 11 61956763 to 62223013 266250 + protein coding gene sperm antigen with calponin homology and coiled-coil domains 1
Cpgi3020 11 62248339 to 62249600 1261 CpG island CpG island 3020
Tssr101999 11 62248977 to 62249011 34 + TSS region transcription start site region 101999
Adora2b 11 62248984 to 62266452 17468 + protein coding gene adenosine A2b receptor
Tssr102000 11 62249012 to 62249027 15 + TSS region transcription start site region 102000
Tssr102001 11 62249062 to 62249073 11 + TSS region transcription start site region 102001
Zswim7 11 62267224 to 62281375 14151 - protein coding gene zinc finger SWIM-type containing 7
Cpgi3021 11 62281031 to 62282039 1008 CpG island CpG island 3021
Tssr108391 11 62281342 to 62281419 77 - TSS region transcription start site region 108391
Tssr102002 11 62281424 to 62281434 10 + TSS region transcription start site region 102002
Tssr102003 11 62281440 to 62281456 16 + TSS region transcription start site region 102003
Tssr102004 11 62281457 to 62281495 38 + TSS region transcription start site region 102004
Ttc19 11 62281459 to 62316441 34982 + protein coding gene tetratricopeptide repeat domain 19
Tssr102005 11 62281503 to 62281521 18 + TSS region transcription start site region 102005
Gm12275 11 62304864 to 62305170 306 - pseudogene predicted gene 12275
Ncor1 11 62316426 to 62458541 142115 - protein coding gene nuclear receptor co-repressor 1
Gm12276 11 62331421 to 62331721 300 + pseudogene predicted gene 12276
Tssr108392 11 62343245 to 62343293 48 - TSS region transcription start site region 108392
Tssr108393 11 62344846 to 62344887 41 - TSS region transcription start site region 108393
Tssr108394 11 62389764 to 62389800 36 - TSS region transcription start site region 108394
Tssr108395 11 62391013 to 62391042 29 - TSS region transcription start site region 108395
Tssr108396 11 62392578 to 62392595 17 - TSS region transcription start site region 108396
Tssr108397 11 62392605 to 62392618 13 - TSS region transcription start site region 108397
Tssr108398 11 62395196 to 62395218 22 - TSS region transcription start site region 108398
Tssr108399 11 62410899 to 62410926 27 - TSS region transcription start site region 108399
Tssr108400 11 62416316 to 62416321 5 - TSS region transcription start site region 108400
Tssr108401 11 62433641 to 62433654 13 - TSS region transcription start site region 108401
Tssr108402 11 62456523 to 62456527 4 - TSS region transcription start site region 108402
Tssr102006 11 62456597 to 62456614 17 + TSS region transcription start site region 102006
Cpgi3022 11 62456621 to 62458774 2153 CpG island CpG island 3022
Tssr102007 11 62456644 to 62456662 18 + TSS region transcription start site region 102007
Tssr108403 11 62457289 to 62457332 43 - TSS region transcription start site region 108403
Tssr102008 11 62457411 to 62457449 38 + TSS region transcription start site region 102008
Tssr102009 11 62457469 to 62457484 15 + TSS region transcription start site region 102009
Tssr108404 11 62457557 to 62457571 14 - TSS region transcription start site region 108404
Tssr108405 11 62457574 to 62457594 20 - TSS region transcription start site region 108405
Tssr108406 11 62457772 to 62457835 63 - TSS region transcription start site region 108406
Tssr108407 11 62457853 to 62457867 14 - TSS region transcription start site region 108407
Tssr108408 11 62457917 to 62457930 13 - TSS region transcription start site region 108408
Tssr108409 11 62457935 to 62457946 11 - TSS region transcription start site region 108409
Tssr108410 11 62458352 to 62458390 38 - TSS region transcription start site region 108410
Tssr102010 11 62458414 to 62458469 55 + TSS region transcription start site region 102010
Pigl 11 62458460 to 62513900 55440 + protein coding gene phosphatidylinositol glycan anchor biosynthesis, class L
Tssr108411 11 62458508 to 62458548 40 - TSS region transcription start site region 108411
Tssr102011 11 62458582 to 62458600 18 + TSS region transcription start site region 102011
Tssr102012 11 62458616 to 62458629 13 + TSS region transcription start site region 102012
Tssr108412 11 62458698 to 62458719 21 - TSS region transcription start site region 108412
Tssr108413 11 62463331 to 62463341 10 - TSS region transcription start site region 108413
Tssr108414 11 62463355 to 62463368 13 - TSS region transcription start site region 108414
Tssr108415 11 62466479 to 62466498 19 - TSS region transcription start site region 108415
Tssr108416 11 62466568 to 62466570 2 - TSS region transcription start site region 108416
Gm12278 11 62482797 to 62501704 18907 + antisense lncRNA gene predicted gene 12278
Tssr108417 11 62494795 to 62494812 17 - TSS region transcription start site region 108417
Tssr102013 11 62509085 to 62509106 21 + TSS region transcription start site region 102013
Tssr102014 11 62509319 to 62509326 7 + TSS region transcription start site region 102014
Tssr108418 11 62510936 to 62510958 22 - TSS region transcription start site region 108418
Tssr102015 11 62511687 to 62511691 4 + TSS region transcription start site region 102015
Tssr102016 11 62511709 to 62511731 22 + TSS region transcription start site region 102016
Tssr102017 11 62511743 to 62511751 8 + TSS region transcription start site region 102017
Tssr102018 11 62511762 to 62511769 7 + TSS region transcription start site region 102018
Tssr102019 11 62511940 to 62511951 11 + TSS region transcription start site region 102019
Tssr102020 11 62512152 to 62512163 11 + TSS region transcription start site region 102020
Tssr102021 11 62512420 to 62512426 6 + TSS region transcription start site region 102021
Gm12949 11 62522741 to 62523542 801 + antisense lncRNA gene predicted gene 12949
Cenpv 11 62524946 to 62539261 14315 - protein coding gene centromere protein V
Tssr108419 11 62537249 to 62537253 4 - TSS region transcription start site region 108419
Cpgi3023 11 62538443 to 62539626 1183 CpG island CpG island 3023
Tssr108420 11 62538883 to 62538898 15 - TSS region transcription start site region 108420
Tssr108421 11 62538904 to 62538923 19 - TSS region transcription start site region 108421
Tssr108422 11 62539023 to 62539032 9 - TSS region transcription start site region 108422
Tssr108423 11 62539041 to 62539072 31 - TSS region transcription start site region 108423
Tssr108424 11 62539091 to 62539131 40 - TSS region transcription start site region 108424
Tssr108425 11 62539183 to 62539194 11 - TSS region transcription start site region 108425
Tssr108426 11 62539199 to 62539253 54 - TSS region transcription start site region 108426
Tssr108427 11 62539257 to 62539264 7 - TSS region transcription start site region 108427
Tssr108428 11 62539281 to 62539288 7 - TSS region transcription start site region 108428
Tssr108429 11 62544812 to 62544827 15 - TSS region transcription start site region 108429
Gm12279 11 62550047 to 62551041 994 - antisense lncRNA gene predicted gene 12279
Tssr102022 11 62550523 to 62550545 22 + TSS region transcription start site region 102022
Tssr102023 11 62550570 to 62550600 30 + TSS region transcription start site region 102023
Cpgi3024 11 62550694 to 62551945 1251 CpG island CpG island 3024
Tssr102024 11 62550809 to 62550857 48 + TSS region transcription start site region 102024
Tssr108430 11 62550940 to 62550980 40 - TSS region transcription start site region 108430
Tssr108431 11 62550993 to 62551019 26 - TSS region transcription start site region 108431
Tssr102025 11 62551167 to 62551191 24 + TSS region transcription start site region 102025
Ubb 11 62551171 to 62553213 2042 + protein coding gene ubiquitin B
Tssr102026 11 62551234 to 62551246 12 + TSS region transcription start site region 102026
Tssr102027 11 62551262 to 62551285 23 + TSS region transcription start site region 102027
Tssr102028 11 62551448 to 62551457 9 + TSS region transcription start site region 102028
Tssr102029 11 62551461 to 62551477 16 + TSS region transcription start site region 102029
Tssr102030 11 62551493 to 62551503 10 + TSS region transcription start site region 102030
Tssr102031 11 62551721 to 62551735 14 + TSS region transcription start site region 102031
Tssr102032 11 62551738 to 62551739 1 + TSS region transcription start site region 102032
Tssr102033 11 62551756 to 62551770 14 + TSS region transcription start site region 102033
Tssr102034 11 62551774 to 62551821 47 + TSS region transcription start site region 102034
Tssr102035 11 62551848 to 62551859 11 + TSS region transcription start site region 102035
Tssr102036 11 62554674 to 62554679 5 + TSS region transcription start site region 102036
Cpgi3025 11 62560453 to 62561016 563 CpG island CpG island 3025
Tssr102037 11 62560491 to 62560496 5 + TSS region transcription start site region 102037
Gm12280 11 62564477 to 62566383 1906 - antisense lncRNA gene predicted gene 12280