Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:62184082-62964085

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189 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Specc1 11 61956763 to 62223013 266250 + protein coding gene sperm antigen with calponin homology and coiled-coil domains 1
Tssr108389 11 62185064 to 62185067 3 - TSS region transcription start site region 108389
Tssr108390 11 62205165 to 62205176 11 - TSS region transcription start site region 108390
D11Mit318 11 62206383 to 62206483 100 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 318
Cpgi3020 11 62248339 to 62249600 1261 CpG island CpG island 3020
Tssr101999 11 62248977 to 62249011 34 + TSS region transcription start site region 101999
Adora2b 11 62248984 to 62266452 17468 + protein coding gene adenosine A2b receptor
Tssr102000 11 62249012 to 62249027 15 + TSS region transcription start site region 102000
Tssr102001 11 62249062 to 62249073 11 + TSS region transcription start site region 102001
Zswim7 11 62267224 to 62281375 14151 - protein coding gene zinc finger SWIM-type containing 7
Cpgi3021 11 62281031 to 62282039 1008 CpG island CpG island 3021
Tssr108391 11 62281342 to 62281419 77 - TSS region transcription start site region 108391
Tssr102002 11 62281424 to 62281434 10 + TSS region transcription start site region 102002
Tssr102003 11 62281440 to 62281456 16 + TSS region transcription start site region 102003
Tssr102004 11 62281457 to 62281495 38 + TSS region transcription start site region 102004
Ttc19 11 62281459 to 62316441 34982 + protein coding gene tetratricopeptide repeat domain 19
Tssr102005 11 62281503 to 62281521 18 + TSS region transcription start site region 102005
Gm12275 11 62304864 to 62305170 306 - pseudogene predicted gene 12275
Ncor1 11 62316426 to 62458541 142115 - protein coding gene nuclear receptor co-repressor 1
Gm12276 11 62331421 to 62331721 300 + pseudogene predicted gene 12276
Tssr108392 11 62343245 to 62343293 48 - TSS region transcription start site region 108392
Tssr108393 11 62344846 to 62344887 41 - TSS region transcription start site region 108393
Tssr108394 11 62389764 to 62389800 36 - TSS region transcription start site region 108394
Tssr108395 11 62391013 to 62391042 29 - TSS region transcription start site region 108395
Tssr108396 11 62392578 to 62392595 17 - TSS region transcription start site region 108396
Tssr108397 11 62392605 to 62392618 13 - TSS region transcription start site region 108397
Tssr108398 11 62395196 to 62395218 22 - TSS region transcription start site region 108398
Tssr108399 11 62410899 to 62410926 27 - TSS region transcription start site region 108399
Tssr108400 11 62416316 to 62416321 5 - TSS region transcription start site region 108400
Tssr108401 11 62433641 to 62433654 13 - TSS region transcription start site region 108401
Tssr108402 11 62456523 to 62456527 4 - TSS region transcription start site region 108402
Tssr102006 11 62456597 to 62456614 17 + TSS region transcription start site region 102006
Cpgi3022 11 62456621 to 62458774 2153 CpG island CpG island 3022
Tssr102007 11 62456644 to 62456662 18 + TSS region transcription start site region 102007
Tssr108403 11 62457289 to 62457332 43 - TSS region transcription start site region 108403
Tssr102008 11 62457411 to 62457449 38 + TSS region transcription start site region 102008
Tssr102009 11 62457469 to 62457484 15 + TSS region transcription start site region 102009
Tssr108404 11 62457557 to 62457571 14 - TSS region transcription start site region 108404
Tssr108405 11 62457574 to 62457594 20 - TSS region transcription start site region 108405
Tssr108406 11 62457772 to 62457835 63 - TSS region transcription start site region 108406
Tssr108407 11 62457853 to 62457867 14 - TSS region transcription start site region 108407
Tssr108408 11 62457917 to 62457930 13 - TSS region transcription start site region 108408
Tssr108409 11 62457935 to 62457946 11 - TSS region transcription start site region 108409
Tssr108410 11 62458352 to 62458390 38 - TSS region transcription start site region 108410
Tssr102010 11 62458414 to 62458469 55 + TSS region transcription start site region 102010
Pigl 11 62458460 to 62513900 55440 + protein coding gene phosphatidylinositol glycan anchor biosynthesis, class L
Tssr108411 11 62458508 to 62458548 40 - TSS region transcription start site region 108411
Tssr102011 11 62458582 to 62458600 18 + TSS region transcription start site region 102011
Tssr102012 11 62458616 to 62458629 13 + TSS region transcription start site region 102012
Tssr108412 11 62458698 to 62458719 21 - TSS region transcription start site region 108412
Tssr108413 11 62463331 to 62463341 10 - TSS region transcription start site region 108413
Tssr108414 11 62463355 to 62463368 13 - TSS region transcription start site region 108414
Tssr108415 11 62466479 to 62466498 19 - TSS region transcription start site region 108415
Tssr108416 11 62466568 to 62466570 2 - TSS region transcription start site region 108416
Gm12278 11 62482797 to 62501704 18907 + antisense lncRNA gene predicted gene 12278
Tssr108417 11 62494795 to 62494812 17 - TSS region transcription start site region 108417
Tssr102013 11 62509085 to 62509106 21 + TSS region transcription start site region 102013
Tssr102014 11 62509319 to 62509326 7 + TSS region transcription start site region 102014
Tssr108418 11 62510936 to 62510958 22 - TSS region transcription start site region 108418
Tssr102015 11 62511687 to 62511691 4 + TSS region transcription start site region 102015
Tssr102016 11 62511709 to 62511731 22 + TSS region transcription start site region 102016
Tssr102017 11 62511743 to 62511751 8 + TSS region transcription start site region 102017
Tssr102018 11 62511762 to 62511769 7 + TSS region transcription start site region 102018
Tssr102019 11 62511940 to 62511951 11 + TSS region transcription start site region 102019
Tssr102020 11 62512152 to 62512163 11 + TSS region transcription start site region 102020
Tssr102021 11 62512420 to 62512426 6 + TSS region transcription start site region 102021
Gm12949 11 62522741 to 62523542 801 + antisense lncRNA gene predicted gene 12949
Cenpv 11 62524946 to 62539261 14315 - protein coding gene centromere protein V
Tssr108419 11 62537249 to 62537253 4 - TSS region transcription start site region 108419
Cpgi3023 11 62538443 to 62539626 1183 CpG island CpG island 3023
Tssr108420 11 62538883 to 62538898 15 - TSS region transcription start site region 108420
Tssr108421 11 62538904 to 62538923 19 - TSS region transcription start site region 108421
Tssr108422 11 62539023 to 62539032 9 - TSS region transcription start site region 108422
Tssr108423 11 62539041 to 62539072 31 - TSS region transcription start site region 108423
Tssr108424 11 62539091 to 62539131 40 - TSS region transcription start site region 108424
Tssr108425 11 62539183 to 62539194 11 - TSS region transcription start site region 108425
Tssr108426 11 62539199 to 62539253 54 - TSS region transcription start site region 108426
Tssr108427 11 62539257 to 62539264 7 - TSS region transcription start site region 108427
Tssr108428 11 62539281 to 62539288 7 - TSS region transcription start site region 108428
Tssr108429 11 62544812 to 62544827 15 - TSS region transcription start site region 108429
Gm12279 11 62550047 to 62551041 994 - antisense lncRNA gene predicted gene 12279
Tssr102022 11 62550523 to 62550545 22 + TSS region transcription start site region 102022
Tssr102023 11 62550570 to 62550600 30 + TSS region transcription start site region 102023
Cpgi3024 11 62550694 to 62551945 1251 CpG island CpG island 3024
Tssr102024 11 62550809 to 62550857 48 + TSS region transcription start site region 102024
Tssr108430 11 62550940 to 62550980 40 - TSS region transcription start site region 108430
Tssr108431 11 62550993 to 62551019 26 - TSS region transcription start site region 108431
Tssr102025 11 62551167 to 62551191 24 + TSS region transcription start site region 102025
Ubb 11 62551171 to 62553213 2042 + protein coding gene ubiquitin B
Tssr102026 11 62551234 to 62551246 12 + TSS region transcription start site region 102026
Tssr102027 11 62551262 to 62551285 23 + TSS region transcription start site region 102027
Tssr102028 11 62551448 to 62551457 9 + TSS region transcription start site region 102028
Tssr102029 11 62551461 to 62551477 16 + TSS region transcription start site region 102029
Tssr102030 11 62551493 to 62551503 10 + TSS region transcription start site region 102030
Tssr102031 11 62551721 to 62551735 14 + TSS region transcription start site region 102031
Tssr102032 11 62551738 to 62551739 1 + TSS region transcription start site region 102032
Tssr102033 11 62551756 to 62551770 14 + TSS region transcription start site region 102033
Tssr102034 11 62551774 to 62551821 47 + TSS region transcription start site region 102034
Tssr102035 11 62551848 to 62551859 11 + TSS region transcription start site region 102035
Tssr102036 11 62554674 to 62554679 5 + TSS region transcription start site region 102036
Cpgi3025 11 62560453 to 62561016 563 CpG island CpG island 3025
Tssr102037 11 62560491 to 62560496 5 + TSS region transcription start site region 102037
Gm12280 11 62564477 to 62566383 1906 - antisense lncRNA gene predicted gene 12280
Tssr108432 11 62574082 to 62574085 3 - TSS region transcription start site region 108432
Tssr102038 11 62574477 to 62574522 45 + TSS region transcription start site region 102038
Trpv2 11 62574486 to 62600305 25819 + protein coding gene transient receptor potential cation channel, subfamily V, member 2
Tssr102039 11 62574523 to 62574552 29 + TSS region transcription start site region 102039
Tssr102040 11 62574573 to 62574584 11 + TSS region transcription start site region 102040
Tssr102041 11 62575618 to 62575642 24 + TSS region transcription start site region 102041
Cpgi3026 11 62575825 to 62576231 406 CpG island CpG island 3026
Tssr102042 11 62575877 to 62575890 13 + TSS region transcription start site region 102042
Tssr102043 11 62575897 to 62575933 36 + TSS region transcription start site region 102043
Tssr102044 11 62575935 to 62575964 29 + TSS region transcription start site region 102044
Tssr102045 11 62575981 to 62575992 11 + TSS region transcription start site region 102045
Tssr102046 11 62576025 to 62576032 7 + TSS region transcription start site region 102046
Tssr102047 11 62583898 to 62583921 23 + TSS region transcription start site region 102047
Cpgi3027 11 62602482 to 62603503 1021 CpG island CpG island 3027
Tssr102048 11 62602867 to 62602886 19 + TSS region transcription start site region 102048
2410006H16Rik 11 62602877 to 62604806 1929 + lncRNA gene RIKEN cDNA 2410006H16 gene
Tssr102049 11 62602957 to 62602991 34 + TSS region transcription start site region 102049
Tssr102050 11 62603061 to 62603078 17 + TSS region transcription start site region 102050
Snord49b 11 62603086 to 62603148 62 + snoRNA gene small nucleolar RNA, C/D box 49B
Tssr102051 11 62603115 to 62603166 51 + TSS region transcription start site region 102051
Tssr102052 11 62603181 to 62603192 11 + TSS region transcription start site region 102052
Tssr102053 11 62603447 to 62603457 10 + TSS region transcription start site region 102053
Snord49a 11 62603460 to 62603521 61 + snoRNA gene small nucleolar RNA, C/D box 49A
Snord65 11 62604530 to 62604586 56 + snoRNA gene small nucleolar RNA, C/D box 65
Lrrc75a 11 62604884 to 62648523 43639 - protein coding gene leucine rich repeat containing 75A
Tssr102054 11 62605728 to 62605778 50 + TSS region transcription start site region 102054
Lrrc75aos2 11 62605766 to 62607748 1982 + antisense lncRNA gene leucine rich repeat containing 75A, opposite strand 2
Tssr108433 11 62617134 to 62617138 4 - TSS region transcription start site region 108433
Lrrc75aos1 11 62634704 to 62638788 4084 + antisense lncRNA gene leucine rich repeat containing 75A, opposite strand 1
Cpgi3028 11 62647743 to 62649143 1400 CpG island CpG island 3028
Tssr108434 11 62648034 to 62648050 16 - TSS region transcription start site region 108434
Tssr3517 11 62648155 to 62648188 33 + TSS region transcription start site region 3517
Tssr108435 11 62648458 to 62648514 56 - TSS region transcription start site region 108435
Tssr108436 11 62648563 to 62648591 28 - TSS region transcription start site region 108436
Tssr102055 11 62648656 to 62648685 29 + TSS region transcription start site region 102055
Mmgt2 11 62648664 to 62666354 17690 + protein coding gene membrane magnesium transporter 2
Tssr102056 11 62648686 to 62648700 14 + TSS region transcription start site region 102056
Tssr102057 11 62648766 to 62648781 15 + TSS region transcription start site region 102057
Tssr102058 11 62648782 to 62648790 8 + TSS region transcription start site region 102058
Tssr102059 11 62648811 to 62648828 17 + TSS region transcription start site region 102059
Tssr102060 11 62648830 to 62648839 9 + TSS region transcription start site region 102060
Tssr102061 11 62650487 to 62650502 15 + TSS region transcription start site region 102061
Cpgi3029 11 62664714 to 62665124 410 CpG island CpG island 3029
Gm12281 11 62697218 to 62697515 297 + pseudogene predicted gene 12281
Zfp287 11 62700356 to 62731905 31549 - protein coding gene zinc finger protein 287
Cpgi3030 11 62731454 to 62732114 660 CpG island CpG island 3030
Tssr108437 11 62731865 to 62731910 45 - TSS region transcription start site region 108437
Cpgi3031 11 62745982 to 62746481 499 CpG island CpG island 3031
n-TWcca8 11 62746015 to 62746086 71 - tRNA gene nuclear encoded tRNA trytophan 8 (anticodon CCA)
Gm27194 11 62749852 to 62752787 2935 + lincRNA gene predicted gene 27194
Wsb2-ps 11 62750064 to 62751280 1216 - pseudogene WD repeat and SOCS box-containing 2, pseudogene
Cpgi3032 11 62751094 to 62751445 351 CpG island CpG island 3032
Gm10428 11 62753100 to 62753498 398 + protein coding gene predicted gene 10428
Cpgi3033 11 62756670 to 62757284 614 CpG island CpG island 3033
Tssr108438 11 62760525 to 62760568 43 - TSS region transcription start site region 108438
Tssr102062 11 62760601 to 62760628 27 + TSS region transcription start site region 102062
Tssr102063 11 62761027 to 62761051 24 + TSS region transcription start site region 102063
Zfp286os 11 62761236 to 62765554 4318 + antisense lncRNA gene zinc finger protein 286, opposite strand
Gm24151 11 62776985 to 62777125 140 + snoRNA gene predicted gene, 24151
Zfp286 11 62778387 to 62789483 11096 - protein coding gene zinc finger protein 286
Cpgi3034 11 62789009 to 62789778 769 CpG island CpG island 3034
Tssr108439 11 62789402 to 62789443 41 - TSS region transcription start site region 108439
Tssr108440 11 62789445 to 62789478 33 - TSS region transcription start site region 108440
Trim16 11 62820191 to 62842948 22757 + protein coding gene tripartite motif-containing 16
Tssr102064 11 62820430 to 62820447 17 + TSS region transcription start site region 102064
Tssr102065 11 62820471 to 62820489 18 + TSS region transcription start site region 102065
Tssr102066 11 62842755 to 62842760 5 + TSS region transcription start site region 102066
Tssr102067 11 62847062 to 62847087 25 + TSS region transcription start site region 102067
Fbxw10 11 62847069 to 62877465 30396 + protein coding gene F-box and WD-40 domain protein 10
Tssr102068 11 62847090 to 62847103 13 + TSS region transcription start site region 102068
Tssr102069 11 62847111 to 62847132 21 + TSS region transcription start site region 102069
Tssr102070 11 62862109 to 62862114 5 + TSS region transcription start site region 102070
Cpgi3035 11 62879274 to 62880070 796 CpG island CpG island 3035
Tvp23b 11 62879435 to 62895186 15751 + protein coding gene trans-golgi network vesicle protein 23B
Tssr102071 11 62879449 to 62879536 87 + TSS region transcription start site region 102071
Tssr102072 11 62879560 to 62879580 20 + TSS region transcription start site region 102072
Tssr108441 11 62915532 to 62915535 3 - TSS region transcription start site region 108441
Tvp23bos 11 62919079 to 62921592 2513 - antisense lncRNA gene trans-golgi network vesicle protein 23B, opposite strand
Gm36614 11 62933253 to 62939590 6337 + lncRNA gene predicted gene, 36614
Cdrt4os2 11 62950425 to 62951079 654 - antisense lncRNA gene CMT1A duplicated region transcript 4, opposite strand 2
Tssr108442 11 62951095 to 62951110 15 - TSS region transcription start site region 108442
Tssr102073 11 62951155 to 62951159 4 + TSS region transcription start site region 102073
Tssr102074 11 62951178 to 62951185 7 + TSS region transcription start site region 102074
Tssr102075 11 62951191 to 62951195 4 + TSS region transcription start site region 102075
Cdrt4 11 62951193 to 62993095 41902 + protein coding gene CMT1A duplicated region transcript 4
Tssr102076 11 62951197 to 62951231 34 + TSS region transcription start site region 102076