Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:6211899-6881941

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196 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Npc1l1 11 6211013 to 6230143 19130 - protein coding gene NPC1 like intracellular cholesterol transporter 1
Tssr106699 11 6213743 to 6213752 9 - TSS region transcription start site region 106699
Tssr106700 11 6213873 to 6213914 41 - TSS region transcription start site region 106700
Tssr106701 11 6222239 to 6222283 44 - TSS region transcription start site region 106701
Tssr106702 11 6228413 to 6228449 36 - TSS region transcription start site region 106702
Tssr106703 11 6229083 to 6229102 19 - TSS region transcription start site region 106703
Tssr106704 11 6229261 to 6229272 11 - TSS region transcription start site region 106704
Tssr106705 11 6230127 to 6230160 33 - TSS region transcription start site region 106705
Tssr106706 11 6230174 to 6230242 68 - TSS region transcription start site region 106706
Tssr100218 11 6230329 to 6230339 10 + TSS region transcription start site region 100218
Tssr100219 11 6242361 to 6242362 1 + TSS region transcription start site region 100219
Gm11401 11 6242378 to 6242721 343 + pseudogene predicted gene 11401
Ddx56 11 6258919 to 6267772 8853 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 56
Cpgi2554 11 6267277 to 6268091 814 CpG island CpG island 2554
Tssr106707 11 6267718 to 6267755 37 - TSS region transcription start site region 106707
Tmed4 11 6270714 to 6274837 4123 - protein coding gene transmembrane p24 trafficking protein 4
Tssr106708 11 6271640 to 6271654 14 - TSS region transcription start site region 106708
n-R5s67 11 6273311 to 6273424 113 + rRNA gene nuclear encoded rRNA 5S 67
Tssr100220 11 6273750 to 6273782 32 + TSS region transcription start site region 100220
Cpgi2555 11 6273939 to 6275168 1229 CpG island CpG island 2555
Tssr106709 11 6274440 to 6274459 19 - TSS region transcription start site region 106709
Tssr106710 11 6274818 to 6274829 11 - TSS region transcription start site region 106710
Tssr106711 11 6274830 to 6274886 56 - TSS region transcription start site region 106711
Cpgi2556 11 6291262 to 6292595 1333 CpG island CpG island 2556
Gm46270 11 6291531 to 6292269 738 - protein coding gene predicted gene, 46270
Tssr100221 11 6291607 to 6291655 48 + TSS region transcription start site region 100221
Ogdh 11 6291633 to 6356642 65009 + protein coding gene oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)
Tssr100222 11 6291660 to 6291687 27 + TSS region transcription start site region 100222
Tssr100223 11 6291964 to 6291997 33 + TSS region transcription start site region 100223
Tssr100224 11 6292034 to 6292050 16 + TSS region transcription start site region 100224
Tssr100225 11 6292053 to 6292067 14 + TSS region transcription start site region 100225
Tssr100226 11 6292084 to 6292111 27 + TSS region transcription start site region 100226
Tssr100227 11 6292120 to 6292203 83 + TSS region transcription start site region 100227
Tssr106712 11 6292131 to 6292149 18 - TSS region transcription start site region 106712
Tssr106713 11 6292154 to 6292167 13 - TSS region transcription start site region 106713
Tssr100228 11 6292279 to 6292331 52 + TSS region transcription start site region 100228
Tssr100229 11 6292555 to 6292580 25 + TSS region transcription start site region 100229
Tssr100230 11 6292630 to 6292650 20 + TSS region transcription start site region 100230
Tssr100231 11 6292652 to 6292663 11 + TSS region transcription start site region 100231
Tssr100232 11 6292668 to 6292692 24 + TSS region transcription start site region 100232
Tssr100233 11 6292854 to 6292870 16 + TSS region transcription start site region 100233
Tssr100234 11 6292876 to 6292898 22 + TSS region transcription start site region 100234
Tssr100235 11 6301540 to 6301546 6 + TSS region transcription start site region 100235
Gm45933 11 6307391 to 6307834 443 - pseudogene predicted gene, 45933
Tssr100236 11 6320595 to 6320599 4 + TSS region transcription start site region 100236
Tssr100237 11 6334448 to 6334452 4 + TSS region transcription start site region 100237
Tssr100238 11 6346533 to 6346558 25 + TSS region transcription start site region 100238
Tssr100239 11 6366140 to 6366153 13 + TSS region transcription start site region 100239
Tssr100240 11 6366236 to 6366244 8 + TSS region transcription start site region 100240
Tssr106714 11 6367111 to 6367161 50 - TSS region transcription start site region 106714
Cpgi2557 11 6388811 to 6390072 1261 CpG island CpG island 2557
Tssr100241 11 6389061 to 6389080 19 + TSS region transcription start site region 100241
Zmiz2 11 6389074 to 6406158 17084 + protein coding gene zinc finger, MIZ-type containing 2
Tssr100242 11 6389085 to 6389106 21 + TSS region transcription start site region 100242
Tssr100243 11 6389117 to 6389137 20 + TSS region transcription start site region 100243
Tssr100244 11 6389330 to 6389397 67 + TSS region transcription start site region 100244
Tssr100245 11 6389428 to 6389435 7 + TSS region transcription start site region 100245
Tssr100246 11 6389442 to 6389453 11 + TSS region transcription start site region 100246
Tssr100247 11 6389553 to 6389573 20 + TSS region transcription start site region 100247
Tssr100248 11 6389576 to 6389596 20 + TSS region transcription start site region 100248
Mir7651 11 6401630 to 6401693 63 + miRNA gene microRNA 7651
Tssr100249 11 6403868 to 6403881 13 + TSS region transcription start site region 100249
Cpgi2558 11 6415302 to 6416788 1486 CpG island CpG island 2558
Tssr106715 11 6415649 to 6415691 42 - TSS region transcription start site region 106715
Tssr100250 11 6415774 to 6415783 9 + TSS region transcription start site region 100250
Tssr100251 11 6415803 to 6415813 10 + TSS region transcription start site region 100251
Tssr100252 11 6415830 to 6415867 37 + TSS region transcription start site region 100252
Ppia 11 6415870 to 6419810 3940 + protein coding gene peptidylprolyl isomerase A
Tssr100253 11 6416227 to 6416232 5 + TSS region transcription start site region 100253
Tssr100254 11 6416258 to 6416317 59 + TSS region transcription start site region 100254
Tssr100255 11 6416329 to 6416345 16 + TSS region transcription start site region 100255
H2afv 11 6427229 to 6444443 17214 - protein coding gene H2A histone family, member V
Cpgi2559 11 6443931 to 6444793 862 CpG island CpG island 2559
Tssr106716 11 6444359 to 6444370 11 - TSS region transcription start site region 106716
Tssr106717 11 6444384 to 6444439 55 - TSS region transcription start site region 106717
Tssr100256 11 6446174 to 6446195 21 + TSS region transcription start site region 100256
Gm11970 11 6446218 to 6446537 319 + pseudogene predicted gene 11970
Gm11971 11 6453151 to 6453438 287 + pseudogene predicted gene 11971
Gm11972 11 6455517 to 6455905 388 - pseudogene predicted gene 11972
Purb 11 6467599 to 6475917 8318 - protein coding gene purine rich element binding protein B
Tssr106718 11 6469968 to 6469991 23 - TSS region transcription start site region 106718
Tssr106719 11 6471473 to 6471493 20 - TSS region transcription start site region 106719
Gm22123 11 6472225 to 6472277 52 - miRNA gene predicted gene, 22123
Tssr106720 11 6472232 to 6472239 7 - TSS region transcription start site region 106720
Cpgi2560 11 6474629 to 6476457 1828 CpG island CpG island 2560
Tssr100257 11 6474693 to 6474751 58 + TSS region transcription start site region 100257
Tssr100258 11 6474906 to 6474946 40 + TSS region transcription start site region 100258
Tssr100259 11 6474962 to 6475025 63 + TSS region transcription start site region 100259
Tssr100260 11 6475102 to 6475116 14 + TSS region transcription start site region 100260
Tssr100261 11 6475266 to 6475307 41 + TSS region transcription start site region 100261
Gm11973 11 6475425 to 6493535 18110 + antisense lncRNA gene predicted gene 11973
Tssr106721 11 6475450 to 6475470 20 - TSS region transcription start site region 106721
Tssr106722 11 6475881 to 6475917 36 - TSS region transcription start site region 106722
Tssr106723 11 6475992 to 6476102 110 - TSS region transcription start site region 106723
Tssr100262 11 6476161 to 6476175 14 + TSS region transcription start site region 100262
Myo1g 11 6506548 to 6520960 14412 - protein coding gene myosin IG
Tssr106724 11 6519168 to 6519180 12 - TSS region transcription start site region 106724
Tssr106725 11 6519497 to 6519513 16 - TSS region transcription start site region 106725
Tssr106726 11 6519769 to 6519789 20 - TSS region transcription start site region 106726
Tssr106727 11 6519800 to 6519828 28 - TSS region transcription start site region 106727
Tssr106728 11 6520844 to 6520851 7 - TSS region transcription start site region 106728
Tssr106729 11 6520864 to 6520866 2 - TSS region transcription start site region 106729
Tssr106730 11 6520872 to 6520891 19 - TSS region transcription start site region 106730
Tssr106731 11 6520894 to 6520969 75 - TSS region transcription start site region 106731
Tssr100263 11 6521010 to 6521024 14 + TSS region transcription start site region 100263
Tssr100264 11 6521038 to 6521048 10 + TSS region transcription start site region 100264
Tssr106732 11 6522782 to 6522786 4 - TSS region transcription start site region 106732
Tssr106733 11 6522848 to 6522854 6 - TSS region transcription start site region 106733
Snhg15 11 6525591 to 6528760 3169 - lncRNA gene small nucleolar RNA host gene 15
Snora9 11 6528033 to 6528165 132 - snoRNA gene small nucleolar RNA, H/ACA box 9
Cpgi2561 11 6528277 to 6529061 784 CpG island CpG island 2561
Tssr106734 11 6528394 to 6528403 9 - TSS region transcription start site region 106734
Tssr106735 11 6528420 to 6528433 13 - TSS region transcription start site region 106735
Tssr106736 11 6528441 to 6528462 21 - TSS region transcription start site region 106736
Tssr106737 11 6528496 to 6528521 25 - TSS region transcription start site region 106737
Tssr106738 11 6528707 to 6528780 73 - TSS region transcription start site region 106738
Tssr106739 11 6528782 to 6528807 25 - TSS region transcription start site region 106739
Tssr100265 11 6528902 to 6528915 13 + TSS region transcription start site region 100265
Gm24000 11 6546147 to 6546235 88 - snoRNA gene predicted gene, 24000
Cpgi2562 11 6546414 to 6547430 1016 CpG island CpG island 2562
Tssr106740 11 6546753 to 6546793 40 - TSS region transcription start site region 106740
Tssr100266 11 6546875 to 6546898 23 + TSS region transcription start site region 100266
Ccm2 11 6546887 to 6596744 49857 + protein coding gene cerebral cavernous malformation 2
Tssr100267 11 6546899 to 6546941 42 + TSS region transcription start site region 100267
2810468A05Rik 11 6547176 to 6547684 508 unclassified gene RIKEN cDNA 2810468A05 gene
Tssr3420 11 6547209 to 6547220 11 + TSS region transcription start site region 3420
Tssr100268 11 6547275 to 6547295 20 + TSS region transcription start site region 100268
Gm11975 11 6559023 to 6559503 480 - pseudogene predicted gene 11975
Tssr100269 11 6560167 to 6560190 23 + TSS region transcription start site region 100269
Tssr100270 11 6560191 to 6560209 18 + TSS region transcription start site region 100270
Tssr100271 11 6560226 to 6560240 14 + TSS region transcription start site region 100271
Tssr106741 11 6560972 to 6560976 4 - TSS region transcription start site region 106741
Tssr106742 11 6561000 to 6561023 23 - TSS region transcription start site region 106742
Tssr100272 11 6561106 to 6561126 20 + TSS region transcription start site region 100272
Tssr100273 11 6561133 to 6561149 16 + TSS region transcription start site region 100273
Tssr100274 11 6561178 to 6561181 3 + TSS region transcription start site region 100274
Tssr100275 11 6564348 to 6564361 13 + TSS region transcription start site region 100275
Tssr100276 11 6588227 to 6588231 4 + TSS region transcription start site region 100276
Tssr100277 11 6588979 to 6588980 1 + TSS region transcription start site region 100277
Nacad 11 6597823 to 6606053 8230 - protein coding gene NAC alpha domain containing
Cpgi2563 11 6598946 to 6599275 329 CpG island CpG island 2563
Tssr106743 11 6599435 to 6599445 10 - TSS region transcription start site region 106743
Cpgi2564 11 6605163 to 6606131 968 CpG island CpG island 2564
Tssr106744 11 6605571 to 6605642 71 - TSS region transcription start site region 106744
Tssr106745 11 6605661 to 6605670 9 - TSS region transcription start site region 106745
Tbrg4 11 6615598 to 6626067 10469 - protein coding gene transforming growth factor beta regulated gene 4
Gm24313 11 6619808 to 6619940 132 - snoRNA gene predicted gene, 24313
Snora5c 11 6620319 to 6620419 100 - snoRNA gene small nucleolar RNA, H/ACA box 5C
Tssr106746 11 6623980 to 6623991 11 - TSS region transcription start site region 106746
Tssr106747 11 6624230 to 6624263 33 - TSS region transcription start site region 106747
Cpgi2565 11 6625645 to 6626540 895 CpG island CpG island 2565
Tssr106748 11 6625785 to 6625796 11 - TSS region transcription start site region 106748
Tssr106749 11 6625805 to 6625822 17 - TSS region transcription start site region 106749
Tssr106750 11 6626030 to 6626072 42 - TSS region transcription start site region 106750
Tssr100278 11 6626120 to 6626191 71 + TSS region transcription start site region 100278
D030016M11Rik 11 6626134 to 6627497 1363 unclassified gene RIKEN cDNA D030016M11 gene
Wap 11 6635482 to 6638637 3155 - protein coding gene whey acidic protein
Tssr106751 11 6635536 to 6635541 5 - TSS region transcription start site region 106751
Tssr106752 11 6635545 to 6635555 10 - TSS region transcription start site region 106752
Tssr106753 11 6635568 to 6635572 4 - TSS region transcription start site region 106753
Tssr106754 11 6635578 to 6635583 5 - TSS region transcription start site region 106754
Tssr100279 11 6635601 to 6635609 8 + TSS region transcription start site region 100279
Tssr100280 11 6636705 to 6636721 16 + TSS region transcription start site region 100280
Tssr100281 11 6637231 to 6637250 19 + TSS region transcription start site region 100281
Tssr106755 11 6637245 to 6637260 15 - TSS region transcription start site region 106755
Tssr106756 11 6637273 to 6637302 29 - TSS region transcription start site region 106756
Tssr106757 11 6638571 to 6638585 14 - TSS region transcription start site region 106757
Tssr106758 11 6638640 to 6638655 15 - TSS region transcription start site region 106758
Tssr106759 11 6638791 to 6638797 6 - TSS region transcription start site region 106759
Gm11978 11 6650148 to 6660233 10085 - pseudogene predicted gene 11978
Cpgi2566 11 6658318 to 6658570 252 CpG island CpG island 2566
Tssr100282 11 6658510 to 6658574 64 + TSS region transcription start site region 100282
Ramp3 11 6658533 to 6677478 18945 + protein coding gene receptor (calcitonin) activity modifying protein 3
Tssr106760 11 6660209 to 6660223 14 - TSS region transcription start site region 106760
Tssr106761 11 6660231 to 6660240 9 - TSS region transcription start site region 106761
Tssr106762 11 6660259 to 6660270 11 - TSS region transcription start site region 106762
Tssr100283 11 6672694 to 6672696 2 + TSS region transcription start site region 100283
Tssr100284 11 6676771 to 6676782 11 + TSS region transcription start site region 100284
Cpgi2567 11 6680084 to 6680251 167 CpG island CpG island 2567
Tssr100285 11 6680355 to 6680391 36 + TSS region transcription start site region 100285
Gm11980 11 6685824 to 6686809 985 + pseudogene predicted gene 11980
Tssr100286 11 6688017 to 6688022 5 + TSS region transcription start site region 100286
Gm39575 11 6694909 to 6695977 1068 + lncRNA gene predicted gene, 39575
Cpgi2568 11 6706574 to 6706822 248 CpG island CpG island 2568
Tssr106763 11 6706915 to 6706916 1 - TSS region transcription start site region 106763
Gm11981 11 6716001 to 6720037 4036 - lncRNA gene predicted gene 11981
Tssr106764 11 6717138 to 6717183 45 - TSS region transcription start site region 106764
Gm11976 11 6718918 to 6719495 577 - pseudogene predicted gene 11976
Tssr106765 11 6719916 to 6719920 4 - TSS region transcription start site region 106765
Tssr106766 11 6720016 to 6720063 47 - TSS region transcription start site region 106766
Tssr106767 11 6720069 to 6720074 5 - TSS region transcription start site region 106767
Gm11977 11 6781708 to 6783138 1430 - pseudogene predicted gene 11977
Gm11979 11 6785838 to 6786580 742 - pseudogene predicted gene 11979
Gm11982 11 6825496 to 6825809 313 - pseudogene predicted gene 11982
Gm11983 11 6835626 to 6837654 2028 - pseudogene predicted gene 11983
Gm11984 11 6861539 to 6862304 765 - pseudogene predicted gene 11984