Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:61494530-63714586

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351 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Acigg5 11 46528416 to 62992617 16464201 QTL anti COL7 IgG2a/c antibody 5
Spqq1 11 54174844 to 63428696 9253852 QTL sperm quality QTL 1
Cpgi3010 11 61493473 to 61494911 1438 CpG island CpG island 3010
B9d1os 11 61504386 to 61505059 673 - antisense lncRNA gene B9 protein domain 1, opposite strand
Cpgi3011 11 61504566 to 61505339 773 CpG island CpG island 3011
Tssr101967 11 61505138 to 61505210 72 + TSS region transcription start site region 101967
B9d1 11 61505163 to 61512929 7766 + protein coding gene B9 protein domain 1
Tssr108363 11 61515493 to 61515497 4 - TSS region transcription start site region 108363
Epn2 11 61517249 to 61579687 62438 - protein coding gene epsin 2
Gm12272 11 61527755 to 61528577 822 + antisense lncRNA gene predicted gene 12272
D11Mit275 11 61573653 to 61573744 91 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 275
Cpgi3012 11 61578768 to 61580087 1319 CpG island CpG island 3012
Tssr101968 11 61578993 to 61579035 42 + TSS region transcription start site region 101968
Tssr108364 11 61579252 to 61579264 12 - TSS region transcription start site region 108364
Tssr108365 11 61579300 to 61579347 47 - TSS region transcription start site region 108365
Tssr108366 11 61579622 to 61579629 7 - TSS region transcription start site region 108366
Tssr108367 11 61579637 to 61579707 70 - TSS region transcription start site region 108367
2210019G11Rik 11 61617837 to 61619146 1309 unclassified gene RIKEN cDNA 2210019G11 gene
Tssr101969 11 61617865 to 61617881 16 + TSS region transcription start site region 101969
Cpgi3013 11 61620392 to 61620691 299 CpG island CpG island 3013
Tssr108368 11 61647235 to 61647243 8 - TSS region transcription start site region 108368
Tssr101970 11 61647703 to 61647724 21 + TSS region transcription start site region 101970
Tssr101971 11 61651134 to 61651161 27 + TSS region transcription start site region 101971
Tssr108369 11 61653123 to 61653138 15 - TSS region transcription start site region 108369
Tssr101972 11 61653224 to 61653235 11 + TSS region transcription start site region 101972
Tssr101973 11 61653244 to 61653253 9 + TSS region transcription start site region 101973
Tssr101974 11 61653259 to 61653353 94 + TSS region transcription start site region 101974
Grap 11 61653321 to 61672777 19456 + protein coding gene GRB2-related adaptor protein
Tssr101975 11 61653358 to 61653370 12 + TSS region transcription start site region 101975
Tssr101976 11 61656329 to 61656333 4 + TSS region transcription start site region 101976
Tssr101977 11 61661046 to 61661050 4 + TSS region transcription start site region 101977
Tssr101978 11 61669028 to 61669033 5 + TSS region transcription start site region 101978
Tssr101979 11 61672195 to 61672218 23 + TSS region transcription start site region 101979
Slc5a10 11 61672782 to 61720816 48034 - protein coding gene solute carrier family 5 (sodium/glucose cotransporter), member 10
Cpgi3014 11 61683827 to 61685177 1350 CpG island CpG island 3014
Tssr101980 11 61684078 to 61684096 18 + TSS region transcription start site region 101980
Fam83g 11 61684091 to 61709951 25860 + protein coding gene family with sequence similarity 83, member G
Tssr101981 11 61684424 to 61684454 30 + TSS region transcription start site region 101981
Tssr101982 11 61684456 to 61684471 15 + TSS region transcription start site region 101982
Tssr108370 11 61719978 to 61719998 20 - TSS region transcription start site region 108370
Tssr108371 11 61720087 to 61720125 38 - TSS region transcription start site region 108371
Tssr108372 11 61720795 to 61720803 8 - TSS region transcription start site region 108372
Tssr108373 11 61720812 to 61720831 19 - TSS region transcription start site region 108373
Prpsap2 11 61729650 to 61762088 32438 - protein coding gene phosphoribosyl pyrophosphate synthetase-associated protein 2
Tssr108374 11 61761583 to 61761590 7 - TSS region transcription start site region 108374
Cpgi3015 11 61761775 to 61762292 517 CpG island CpG island 3015
Tssr108375 11 61762040 to 61762082 42 - TSS region transcription start site region 108375
Ulk2 11 61775649 to 61855073 79424 - protein coding gene unc-51 like kinase 2
D11Mit260 11 61795994 to 61796088 94 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 260
Pid3 11 61795994 to 88808902 27012908 QTL prion incubation determinant 3
Tssr108376 11 61808646 to 61808650 4 - TSS region transcription start site region 108376
Cpgi3016 11 61854047 to 61855542 1495 CpG island CpG island 3016
Tssr108377 11 61854873 to 61854884 11 - TSS region transcription start site region 108377
Tssr108378 11 61855018 to 61855025 7 - TSS region transcription start site region 108378
Tssr108379 11 61855026 to 61855069 43 - TSS region transcription start site region 108379
Tssr108380 11 61855082 to 61855097 15 - TSS region transcription start site region 108380
Tssr101983 11 61855130 to 61855141 11 + TSS region transcription start site region 101983
Tssr108381 11 61855301 to 61855339 38 - TSS region transcription start site region 108381
A530017D24Rik 11 61864568 to 61868058 3490 - lincRNA gene RIKEN cDNA A530017D24 gene
Gm26964 11 61865475 to 61867639 2164 + lincRNA gene predicted gene, 26964
Akap10 11 61871307 to 61930252 58945 - protein coding gene A kinase (PRKA) anchor protein 10
Tssr108382 11 61878658 to 61878664 6 - TSS region transcription start site region 108382
A430106A12Rik 11 61878735 to 61881451 2716 unclassified non-coding RNA gene RIKEN cDNA A430106A12 gene
Tssr108383 11 61891647 to 61891663 16 - TSS region transcription start site region 108383
Tssr108384 11 61915172 to 61915173 1 - TSS region transcription start site region 108384
Tssr108385 11 61915193 to 61915208 15 - TSS region transcription start site region 108385
Tssr108386 11 61927019 to 61927045 26 - TSS region transcription start site region 108386
Cpgi3017 11 61929594 to 61930557 963 CpG island CpG island 3017
Tssr108387 11 61930197 to 61930243 46 - TSS region transcription start site region 108387
Tssr108388 11 61930246 to 61930257 11 - TSS region transcription start site region 108388
Gm23721 11 61936446 to 61936552 106 - snRNA gene predicted gene, 23721
Gm12273 11 61950917 to 61952736 1819 + lincRNA gene predicted gene 12273
Cpgi3018 11 61956657 to 61957431 774 CpG island CpG island 3018
Specc1 11 61956763 to 62223013 266250 + protein coding gene sperm antigen with calponin homology and coiled-coil domains 1
Tssr101984 11 61956780 to 61956791 11 + TSS region transcription start site region 101984
Tssr101985 11 61956796 to 61956831 35 + TSS region transcription start site region 101985
Gm12274 11 61973967 to 61974351 384 - pseudogene predicted gene 12274
Tssr101986 11 61976085 to 61976096 11 + TSS region transcription start site region 101986
Gm17912 11 61979081 to 61979580 499 - pseudogene predicted gene, 17912
Tssr101987 11 61982296 to 61982297 1 + TSS region transcription start site region 101987
Tssr101988 11 61984591 to 61984609 18 + TSS region transcription start site region 101988
D11Mit157 11 61992467 to 61992611 144 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 157
Tssr3516 11 62005335 to 62005344 9 + TSS region transcription start site region 3516
Tssr101989 11 62005377 to 62005391 14 + TSS region transcription start site region 101989
Tssr101990 11 62005395 to 62005411 16 + TSS region transcription start site region 101990
Tssr101991 11 62005774 to 62005783 9 + TSS region transcription start site region 101991
Tssr101992 11 62005784 to 62005795 11 + TSS region transcription start site region 101992
Tssr101993 11 62006511 to 62006552 41 + TSS region transcription start site region 101993
Tssr101994 11 62028654 to 62028657 3 + TSS region transcription start site region 101994
Gm39988 11 62038464 to 62054431 15967 - lncRNA gene predicted gene, 39988
Tssr101995 11 62057234 to 62057238 4 + TSS region transcription start site region 101995
Cpgi3019 11 62076644 to 62077716 1072 CpG island CpG island 3019
Tssr101996 11 62077018 to 62077101 83 + TSS region transcription start site region 101996
Tssr101997 11 62107537 to 62107542 5 + TSS region transcription start site region 101997
Gm39985 11 62129563 to 62132303 2740 - lncRNA gene predicted gene, 39985
Tssr101998 11 62131084 to 62131088 4 + TSS region transcription start site region 101998
D11Mit261 11 62151201 to 62151308 107 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 261
Tssr108389 11 62185064 to 62185067 3 - TSS region transcription start site region 108389
Tssr108390 11 62205165 to 62205176 11 - TSS region transcription start site region 108390
D11Mit318 11 62206383 to 62206483 100 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 318
Cpgi3020 11 62248339 to 62249600 1261 CpG island CpG island 3020
Tssr101999 11 62248977 to 62249011 34 + TSS region transcription start site region 101999
Adora2b 11 62248984 to 62266452 17468 + protein coding gene adenosine A2b receptor
Tssr102000 11 62249012 to 62249027 15 + TSS region transcription start site region 102000
Tssr102001 11 62249062 to 62249073 11 + TSS region transcription start site region 102001
Zswim7 11 62267224 to 62281375 14151 - protein coding gene zinc finger SWIM-type containing 7
Cpgi3021 11 62281031 to 62282039 1008 CpG island CpG island 3021
Tssr108391 11 62281342 to 62281419 77 - TSS region transcription start site region 108391
Tssr102002 11 62281424 to 62281434 10 + TSS region transcription start site region 102002
Tssr102003 11 62281440 to 62281456 16 + TSS region transcription start site region 102003
Tssr102004 11 62281457 to 62281495 38 + TSS region transcription start site region 102004
Ttc19 11 62281459 to 62316441 34982 + protein coding gene tetratricopeptide repeat domain 19
Tssr102005 11 62281503 to 62281521 18 + TSS region transcription start site region 102005
Gm12275 11 62304864 to 62305170 306 - pseudogene predicted gene 12275
Ncor1 11 62316426 to 62458541 142115 - protein coding gene nuclear receptor co-repressor 1
Gm12276 11 62331421 to 62331721 300 + pseudogene predicted gene 12276
Tssr108392 11 62343245 to 62343293 48 - TSS region transcription start site region 108392
Tssr108393 11 62344846 to 62344887 41 - TSS region transcription start site region 108393
Tssr108394 11 62389764 to 62389800 36 - TSS region transcription start site region 108394
Tssr108395 11 62391013 to 62391042 29 - TSS region transcription start site region 108395
Tssr108396 11 62392578 to 62392595 17 - TSS region transcription start site region 108396
Tssr108397 11 62392605 to 62392618 13 - TSS region transcription start site region 108397
Tssr108398 11 62395196 to 62395218 22 - TSS region transcription start site region 108398
Tssr108399 11 62410899 to 62410926 27 - TSS region transcription start site region 108399
Tssr108400 11 62416316 to 62416321 5 - TSS region transcription start site region 108400
Tssr108401 11 62433641 to 62433654 13 - TSS region transcription start site region 108401
Tssr108402 11 62456523 to 62456527 4 - TSS region transcription start site region 108402
Tssr102006 11 62456597 to 62456614 17 + TSS region transcription start site region 102006
Cpgi3022 11 62456621 to 62458774 2153 CpG island CpG island 3022
Tssr102007 11 62456644 to 62456662 18 + TSS region transcription start site region 102007
Tssr108403 11 62457289 to 62457332 43 - TSS region transcription start site region 108403
Tssr102008 11 62457411 to 62457449 38 + TSS region transcription start site region 102008
Tssr102009 11 62457469 to 62457484 15 + TSS region transcription start site region 102009
Tssr108404 11 62457557 to 62457571 14 - TSS region transcription start site region 108404
Tssr108405 11 62457574 to 62457594 20 - TSS region transcription start site region 108405
Tssr108406 11 62457772 to 62457835 63 - TSS region transcription start site region 108406
Tssr108407 11 62457853 to 62457867 14 - TSS region transcription start site region 108407
Tssr108408 11 62457917 to 62457930 13 - TSS region transcription start site region 108408
Tssr108409 11 62457935 to 62457946 11 - TSS region transcription start site region 108409
Tssr108410 11 62458352 to 62458390 38 - TSS region transcription start site region 108410
Tssr102010 11 62458414 to 62458469 55 + TSS region transcription start site region 102010
Pigl 11 62458460 to 62513900 55440 + protein coding gene phosphatidylinositol glycan anchor biosynthesis, class L
Tssr108411 11 62458508 to 62458548 40 - TSS region transcription start site region 108411
Tssr102011 11 62458582 to 62458600 18 + TSS region transcription start site region 102011
Tssr102012 11 62458616 to 62458629 13 + TSS region transcription start site region 102012
Tssr108412 11 62458698 to 62458719 21 - TSS region transcription start site region 108412
Tssr108413 11 62463331 to 62463341 10 - TSS region transcription start site region 108413
Tssr108414 11 62463355 to 62463368 13 - TSS region transcription start site region 108414
Tssr108415 11 62466479 to 62466498 19 - TSS region transcription start site region 108415
Tssr108416 11 62466568 to 62466570 2 - TSS region transcription start site region 108416
Gm12278 11 62482797 to 62501704 18907 + antisense lncRNA gene predicted gene 12278
Tssr108417 11 62494795 to 62494812 17 - TSS region transcription start site region 108417
Tssr102013 11 62509085 to 62509106 21 + TSS region transcription start site region 102013
Tssr102014 11 62509319 to 62509326 7 + TSS region transcription start site region 102014
Tssr108418 11 62510936 to 62510958 22 - TSS region transcription start site region 108418
Tssr102015 11 62511687 to 62511691 4 + TSS region transcription start site region 102015
Tssr102016 11 62511709 to 62511731 22 + TSS region transcription start site region 102016
Tssr102017 11 62511743 to 62511751 8 + TSS region transcription start site region 102017
Tssr102018 11 62511762 to 62511769 7 + TSS region transcription start site region 102018
Tssr102019 11 62511940 to 62511951 11 + TSS region transcription start site region 102019
Tssr102020 11 62512152 to 62512163 11 + TSS region transcription start site region 102020
Tssr102021 11 62512420 to 62512426 6 + TSS region transcription start site region 102021
Gm12949 11 62522741 to 62523542 801 + antisense lncRNA gene predicted gene 12949
Cenpv 11 62524946 to 62539261 14315 - protein coding gene centromere protein V
Tssr108419 11 62537249 to 62537253 4 - TSS region transcription start site region 108419
Cpgi3023 11 62538443 to 62539626 1183 CpG island CpG island 3023
Tssr108420 11 62538883 to 62538898 15 - TSS region transcription start site region 108420
Tssr108421 11 62538904 to 62538923 19 - TSS region transcription start site region 108421
Tssr108422 11 62539023 to 62539032 9 - TSS region transcription start site region 108422
Tssr108423 11 62539041 to 62539072 31 - TSS region transcription start site region 108423
Tssr108424 11 62539091 to 62539131 40 - TSS region transcription start site region 108424
Tssr108425 11 62539183 to 62539194 11 - TSS region transcription start site region 108425
Tssr108426 11 62539199 to 62539253 54 - TSS region transcription start site region 108426
Tssr108427 11 62539257 to 62539264 7 - TSS region transcription start site region 108427
Tssr108428 11 62539281 to 62539288 7 - TSS region transcription start site region 108428
Tssr108429 11 62544812 to 62544827 15 - TSS region transcription start site region 108429
Gm12279 11 62550047 to 62551041 994 - antisense lncRNA gene predicted gene 12279
Tssr102022 11 62550523 to 62550545 22 + TSS region transcription start site region 102022
Tssr102023 11 62550570 to 62550600 30 + TSS region transcription start site region 102023
Cpgi3024 11 62550694 to 62551945 1251 CpG island CpG island 3024
Tssr102024 11 62550809 to 62550857 48 + TSS region transcription start site region 102024
Tssr108430 11 62550940 to 62550980 40 - TSS region transcription start site region 108430
Tssr108431 11 62550993 to 62551019 26 - TSS region transcription start site region 108431
Tssr102025 11 62551167 to 62551191 24 + TSS region transcription start site region 102025
Ubb 11 62551171 to 62553213 2042 + protein coding gene ubiquitin B
Tssr102026 11 62551234 to 62551246 12 + TSS region transcription start site region 102026
Tssr102027 11 62551262 to 62551285 23 + TSS region transcription start site region 102027
Tssr102028 11 62551448 to 62551457 9 + TSS region transcription start site region 102028
Tssr102029 11 62551461 to 62551477 16 + TSS region transcription start site region 102029
Tssr102030 11 62551493 to 62551503 10 + TSS region transcription start site region 102030
Tssr102031 11 62551721 to 62551735 14 + TSS region transcription start site region 102031
Tssr102032 11 62551738 to 62551739 1 + TSS region transcription start site region 102032
Tssr102033 11 62551756 to 62551770 14 + TSS region transcription start site region 102033
Tssr102034 11 62551774 to 62551821 47 + TSS region transcription start site region 102034
Tssr102035 11 62551848 to 62551859 11 + TSS region transcription start site region 102035
Tssr102036 11 62554674 to 62554679 5 + TSS region transcription start site region 102036
Cpgi3025 11 62560453 to 62561016 563 CpG island CpG island 3025
Tssr102037 11 62560491 to 62560496 5 + TSS region transcription start site region 102037
Gm12280 11 62564477 to 62566383 1906 - antisense lncRNA gene predicted gene 12280
Tssr108432 11 62574082 to 62574085 3 - TSS region transcription start site region 108432