Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:61303442-61599131

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75 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Del(11Cops3-Rnf112)1Jrl 11 59817795 to 61454131 1636336 complex/cluster/region deletion, Chr 11, James R Lupski 1
Dp(11Cops3-Rnf112)1Jrl 11 59817795 to 61454131 1636336 chromosomal duplication duplication, Chr 11, James R Lupski 1
Slc47a2 11 61301631 to 61342860 41229 - protein coding gene solute carrier family 47, member 2
Tssr108340 11 61331712 to 61331716 4 - TSS region transcription start site region 108340
Gm25929 11 61334761 to 61334867 106 + snRNA gene predicted gene, 25929
Cpgi3007 11 61342190 to 61343100 910 CpG island CpG island 3007
Tssr108341 11 61342794 to 61342803 9 - TSS region transcription start site region 108341
Tssr108342 11 61342809 to 61342814 5 - TSS region transcription start site region 108342
Tssr108343 11 61342821 to 61342868 47 - TSS region transcription start site region 108343
Slc47a1 11 61343401 to 61378345 34944 - protein coding gene solute carrier family 47, member 1
Gm18931 11 61356470 to 61357267 797 - pseudogene predicted gene, 18931
Tssr108344 11 61365045 to 61365050 5 - TSS region transcription start site region 108344
Tssr108345 11 61366603 to 61366614 11 - TSS region transcription start site region 108345
Tssr108346 11 61366688 to 61366713 25 - TSS region transcription start site region 108346
Cpgi3008 11 61377771 to 61378424 653 CpG island CpG island 3008
Tssr108347 11 61378052 to 61378085 33 - TSS region transcription start site region 108347
Tssr108348 11 61378089 to 61378092 3 - TSS region transcription start site region 108348
Tssr108349 11 61378103 to 61378108 5 - TSS region transcription start site region 108349
Tssr108350 11 61378306 to 61378347 41 - TSS region transcription start site region 108350
Gm42081 11 61391128 to 61397803 6675 - lncRNA gene predicted gene, 42081
Cpgi3009 11 61407620 to 61408839 1219 CpG island CpG island 3009
n-TWcca5 11 61407916 to 61407987 71 - tRNA gene nuclear encoded tRNA trytophan 5 (anticodon CCA)
Gm45605 11 61408018 to 61412286 4268 + lincRNA gene predicted gene 45605
Gm12271 11 61416402 to 61416815 413 - pseudogene predicted gene 12271
D11Mit317 11 61429688 to 61429806 118 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 317
Rnf112 11 61448442 to 61454131 5689 - protein coding gene ring finger protein 112
Tssr108351 11 61453516 to 61453553 37 - TSS region transcription start site region 108351
Tssr108352 11 61453857 to 61453866 9 - TSS region transcription start site region 108352
Tssr108353 11 61453890 to 61453910 20 - TSS region transcription start site region 108353
Tssr108354 11 61453921 to 61453982 61 - TSS region transcription start site region 108354
Tssr108355 11 61453992 to 61454019 27 - TSS region transcription start site region 108355
Tssr108356 11 61469387 to 61469392 5 - TSS region transcription start site region 108356
Tssr101947 11 61484885 to 61484910 25 + TSS region transcription start site region 101947
Mfap4 11 61485378 to 61488708 3330 + protein coding gene microfibrillar-associated protein 4
Tssr101948 11 61485438 to 61485452 14 + TSS region transcription start site region 101948
Tssr101949 11 61485703 to 61485741 38 + TSS region transcription start site region 101949
Tssr101950 11 61485747 to 61485776 29 + TSS region transcription start site region 101950
Tssr101951 11 61486025 to 61486039 14 + TSS region transcription start site region 101951
Tssr101952 11 61486107 to 61486130 23 + TSS region transcription start site region 101952
Tssr101953 11 61487071 to 61487113 42 + TSS region transcription start site region 101953
Tssr101954 11 61487744 to 61487756 12 + TSS region transcription start site region 101954
Tssr101955 11 61487896 to 61487909 13 + TSS region transcription start site region 101955
Tssr101956 11 61487952 to 61487963 11 + TSS region transcription start site region 101956
Tssr101957 11 61487997 to 61488011 14 + TSS region transcription start site region 101957
Tssr101958 11 61488016 to 61488031 15 + TSS region transcription start site region 101958
Tssr101959 11 61488043 to 61488071 28 + TSS region transcription start site region 101959
Tssr108357 11 61488115 to 61488130 15 - TSS region transcription start site region 108357
Tssr101960 11 61488146 to 61488164 18 + TSS region transcription start site region 101960
Tssr108358 11 61488218 to 61488277 59 - TSS region transcription start site region 108358
Tssr101961 11 61488286 to 61488305 19 + TSS region transcription start site region 101961
Tssr108359 11 61488291 to 61488317 26 - TSS region transcription start site region 108359
Tssr101962 11 61488337 to 61488349 12 + TSS region transcription start site region 101962
Tssr101963 11 61488385 to 61488420 35 + TSS region transcription start site region 101963
Tssr101964 11 61488448 to 61488460 12 + TSS region transcription start site region 101964
Tssr101965 11 61488482 to 61488515 33 + TSS region transcription start site region 101965
Tssr101966 11 61488669 to 61488673 4 + TSS region transcription start site region 101966
Mapk7 11 61488812 to 61494272 5460 - protein coding gene mitogen-activated protein kinase 7
Cpgi3010 11 61493473 to 61494911 1438 CpG island CpG island 3010
Tssr108360 11 61493881 to 61493890 9 - TSS region transcription start site region 108360
Tssr108361 11 61493969 to 61494046 77 - TSS region transcription start site region 108361
Tssr108362 11 61494173 to 61494261 88 - TSS region transcription start site region 108362
B9d1os 11 61504386 to 61505059 673 - antisense lncRNA gene B9 protein domain 1, opposite strand
Cpgi3011 11 61504566 to 61505339 773 CpG island CpG island 3011
Tssr101967 11 61505138 to 61505210 72 + TSS region transcription start site region 101967
B9d1 11 61505163 to 61512929 7766 + protein coding gene B9 protein domain 1
Tssr108363 11 61515493 to 61515497 4 - TSS region transcription start site region 108363
Epn2 11 61517249 to 61579687 62438 - protein coding gene epsin 2
Gm12272 11 61527755 to 61528577 822 + antisense lncRNA gene predicted gene 12272
D11Mit275 11 61573653 to 61573744 91 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 275
Cpgi3012 11 61578768 to 61580087 1319 CpG island CpG island 3012
Tssr101968 11 61578993 to 61579035 42 + TSS region transcription start site region 101968
Tssr108364 11 61579252 to 61579264 12 - TSS region transcription start site region 108364
Tssr108365 11 61579300 to 61579347 47 - TSS region transcription start site region 108365
Tssr108366 11 61579622 to 61579629 7 - TSS region transcription start site region 108366
Tssr108367 11 61579637 to 61579707 70 - TSS region transcription start site region 108367